5G0YA

Pseudomonas aeruginosa hdah unliganded.
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
372
structure length
372
Chain Sequence
RRTAFFFDELCLWHAAGPHALTLPVGGWVQPPAAAGHAESPETKRRLKSLLDVSGLTARLQLRSAPPASDEDLLRVHPAHYLERFKALSDAGGGSLGQDAPIGPGSYEIARLSAGLAIAALDAVLAGEADNAYSLSRPPGHHCLPDQAMGFCFFANIAVAIEAAKARHGVERVAVLDWDVHHGNGTQAIYYRRDDVLSISLHQDGCFPPGYSGAEDIGEDRGRGFNLNVPLLPGGGHDAYMQAMQRIVLPALERFRPQLIVVASGFDANAVDPLARMQLHSDSFRAMTAMVRDAAERHAGGRLVVVHEGGYSEAYVPFCGLAVIEELSGVRSAVRDPLRDFIELQQPNAAFRDFQRQRLEELAAQFGLCPAQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HDAH
publication title Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 136
structure length 372
sequence length 372
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g0yA00
3MZ3A 4BZ5A 5BWZA 5EFNA 5D1CA 5EEIA 3MENA 5G0YA 1ZZ3A 5EEFA 5G0IA 5EFGA 5G0XA 5G1CA 3F07A 3MZ7A 5G10A 3ZNSA 3C0ZA 5G0JA 4BZ6A 1C3SA 1ZZ1A 5EENA 3SFHA 5IX0A 5FCWA 5JI5A 5EFBD 2VQWG 4QA1A 4QA5A 3F06A 3Q9FA 5D1DA 5G12A 4RN1A 3EZTA 3MAXA 2GH6A 3Q9BA 5G0HA 4BKXB 3MZ6A 3MZ4A 4QA3A 2V5WA 5A2SA 5EFHA 5THSA 2V5XA 4CQFA 5DC8A 2VQJA 5THUA 5EF8A 1T67A 4A69A 3C0YA 3F0RA 1W22A 5EEMA 5DC7A 4RN0A 5THTA 4CBTA 3EWFA 4ZURA 4BZ8A 3ZNRA 2VQMA 1C3RA 2VQVA 4LY1A 3Q9CA 4QA6A 4ZUNA 4QA0A 1T64A 2VCGA 4ZUPA 5LI3A 4RN2A 4QA7A 5G0GA 5ICNB 5THVA 4ZUQA 5G11A 2VQOA 1C3PA 5G17A 1VKGA 5D1BA 1T69A 3Q9EA 2VQQA 5DC6A 5DC5A 4QA4A 5EEKA 4LXZA 4BZ9A 4QA2A 3C10A 3SFFA 5FUEA 3EZPA 4ZUOA 5G1AA 4ZUMA 5G1BA 5G3WA 4BZ7A 5EF7A 5IWGA 5EFJD 1ZZ0A 4CBYA 3EW8A 5G13A 3RQDA 5EFKB
chains in the Genus database with same CATH superfamily
1R1OA 3GN0A 4IU1A 3MZ3A 1T4TA 3THJA 1T4PA 4BZ5A 5BWZA 3THHA 3LP4A 5D1CA 5EFNA 5EEIA 3MENA 4RHKA 4Q3SA 5G0YA 2EIVA 3SL1A 1ZZ3A 3NIPA 4GWCA 1P8MA 5EEFA 3CEVA 5G0IA 4RHQA 5EFGA 5G0XA 5G1CA 3F07A 3MZ7A 5G10A 3ZNSA 1ZPGA 3F80A 4IXUA 3C0ZA 5G0JA 4BZ6A 1D3VA 1C3SA 1ZZ1A 4Q3UA 5EENA 1T5GA 4IE2A 5IX0A 5RLAA 5FCWA 4Q3QA 3SFHA 5JI5A 5EFBD 4MYFA 2VQWG 1HQ5A 4QA1A 1T4RA 4QA5A 3F06A 3Q9FA 4FCKA 5D1DA 1TBLA 5G12A 4RN1A 3EZTA 4GSMA 3LP7A 4MYLA 3MAXA 4Q40A 4ITYA 1TBJA 2GH6A 3E6KA 3Q9BA 2PLLA 2ZAVA 5G0HA 4BKXB 2EF5A 3SL0A 3MZ6A 3MZ4A 3RLAA 4Q3TA 4Q42A 4QA3A 3E8QA 4HXQA 2V5WA 5A2SA 4Q3RA 5EFHA 5THSA 2V5XA 3KV2A 3NIOA 4MXRA 4Q3PA 3TH7A 4CQFA 1WVBA 2VQJA 5DC8A 5THUA 5EF8A 1T67A 3M1RA 3C0YA 4IXVA 1TBHA 3F0RA 4A69A 3TF3A 3SJTA 3MJLA 1GQ6A 1W22A 3LHLA 1P8NA 3E9BA 3MMRA 5EEMA 1WVAA 1HQHA 4RN0A 5DC7A 2EF4A 4G3HA 5THTA 4CBTA 1GQ7A 3EWFA 4ZURA 4BZ8A 3ZNRA 2VQMA 4RHIA 1TA1A 1C3RA 1HQGA 2VQVA 4LY1A 4MYNA 2AEBA 3Q9CA 4RHJA 4QA6A 4MYKA 4ZUNA 4QA0A 1P8QA 1T64A 4Q3VA 2VCGA 4ZUPA 5LI3A 4FCIA 4RN2A 4IE1A 1RLAA 4QA7A 4IU0A 5G0GA 5ICNB 1HQFA 2A0MA 5THVA 4ZUQA 5G11A 1P8OA 5HJ9A 4IU4A 4GSZA 1P8RA 4HZEA 2VQOA 1XFKA 3THEA 3MFVA 3GMZA 1C3PA 3SKKA 5G17A 1WOHA 1VKGA 5D1BA 1T69A 3Q9EA 4IE3A 4DZ4A 1P8PA 2VQQA 5DC6A 3DJ8A 5DC5A 4Q41A 3MFWA 4QA4A 5EEKA 4LXZA 1ZPEA 4BZ9A 4QA2A 3C10A 3E6VA 2PHAA 3E8ZA 3SFFA 4GWDA 4I06A 5FUEA 3EZPA 4ZUOA 1WOIA 1T4SA 4GSVA 4ZUMA 5G1AA 5G1BA 4RHLA 1HQXA 4HWWA 4RLAA 4IU5A 4RHMA 5G3WA 1T5FA 4BZ7A 4CEVA 3PZLA 1PQ3A 3NIQA 5EF7A 5IWGA 4Q3RC 5EFJD 1P8SA 1ZZ0A 3EW8A 5G13A 4CBYA 3RQDA 5HJAA 5EFKB 1CEVA 2RLAA 2PHOA 1WOGA 5CEVA 2CEVA
chains in the Genus database with same CATH topology
3MZ3A 4BZ5A 5BWZA 5EFNA 5D1CA 5EEIA 3MENA 5G0YA 1ZZ3A 5EEFA 5G0IA 5EFGA 5G0XA 5G1CA 3F07A 3MZ7A 5G10A 3ZNSA 3C0ZA 5G0JA 4BZ6A 1C3SA 1ZZ1A 5EENA 3SFHA 5IX0A 5FCWA 5JI5A 5EFBD 2VQWG 4QA1A 4QA5A 3F06A 3Q9FA 5D1DA 5G12A 4RN1A 3EZTA 3MAXA 2GH6A 3Q9BA 5G0HA 4BKXB 3MZ6A 3MZ4A 4QA3A 2V5WA 5A2SA 5EFHA 5THSA 2V5XA 4CQFA 5DC8A 2VQJA 5THUA 5EF8A 1T67A 4A69A 3C0YA 3F0RA 1W22A 5EEMA 5DC7A 4RN0A 5THTA 4CBTA 3EWFA 4ZURA 4BZ8A 3ZNRA 2VQMA 1C3RA 2VQVA 4LY1A 3Q9CA 4QA6A 4ZUNA 4QA0A 1T64A 2VCGA 4ZUPA 5LI3A 4RN2A 4QA7A 5G0GA 5ICNB 5THVA 4ZUQA 5G11A 2VQOA 1C3PA 5G17A 1VKGA 5D1BA 1T69A 3Q9EA 2VQQA 5DC6A 5DC5A 4QA4A 5EEKA 4LXZA 4BZ9A 4QA2A 3C10A 3SFFA 5FUEA 3EZPA 4ZUOA 5G1AA 4ZUMA 5G1BA 5G3WA 4BZ7A 5EF7A 5IWGA 5EFJD 1ZZ0A 4CBYA 3EW8A 5G13A 3RQDA 5EFKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MZ3 A;  4BZ5 A;  5BWZ A;  5EFN A;  5D1C A;  5EEI A;  3MEN A;  5G0Y A;  1ZZ3 A;  5EEF A;  5G0I A;  5EFG A;  5G0X A;  5G1C A;  3F07 A;  3MZ7 A;  5G10 A;  3ZNS A;  3C0Z A;  5G0J A;  4BZ6 A;  1C3S A;  1ZZ1 A;  5EEN A;  3SFH A;  5IX0 A;  5FCW A;  5JI5 A;  5EFB D;  2VQW G;  4QA1 A;  4QA5 A;  3F06 A;  3Q9F A;  5D1D A;  5G12 A;  4RN1 A;  3EZT A;  3MAX A;  2GH6 A;  3Q9B A;  5G0H A;  4BKX B;  3MZ6 A;  3MZ4 A;  4QA3 A;  2V5W A;  5A2S A;  5EFH A;  5THS A;  2V5X A;  4CQF A;  5DC8 A;  2VQJ A;  5THU A;  5EF8 A;  1T67 A;  4A69 A;  3C0Y A;  3F0R A;  1W22 A;  5EEM A;  5DC7 A;  4RN0 A;  5THT A;  4CBT A;  3EWF A;  4ZUR A;  4BZ8 A;  3ZNR A;  2VQM A;  1C3R A;  2VQV A;  4LY1 A;  3Q9C A;  4QA6 A;  4ZUN A;  4QA0 A;  1T64 A;  2VCG A;  4ZUP A;  5LI3 A;  4RN2 A;  4QA7 A;  5G0G A;  5ICN B;  5THV A;  4ZUQ A;  5G11 A;  2VQO A;  1C3P A;  5G17 A;  1VKG A;  5D1B A;  1T69 A;  3Q9E A;  2VQQ A;  5DC6 A;  5DC5 A;  4QA4 A;  5EEK A;  4LXZ A;  4BZ9 A;  4QA2 A;  3C10 A;  3SFF A;  5FUE A;  3EZP A;  4ZUO A;  5G1A A;  4ZUM A;  5G1B A;  5G3W A;  4BZ7 A;  5EF7 A;  5IWG A;  5EFJ D;  1ZZ0 A;  4CBY A;  3EW8 A;  5G13 A;  3RQD A;  5EFK B; 
#chains in the Genus database with same CATH topology
 1R1O A;  3GN0 A;  4IU1 A;  3MZ3 A;  1T4T A;  3THJ A;  1T4P A;  4BZ5 A;  5BWZ A;  3THH A;  3LP4 A;  5D1C A;  5EFN A;  5EEI A;  3MEN A;  4RHK A;  4Q3S A;  5G0Y A;  2EIV A;  3SL1 A;  1ZZ3 A;  3NIP A;  4GWC A;  1P8M A;  5EEF A;  3CEV A;  5G0I A;  4RHQ A;  5EFG A;  5G0X A;  5G1C A;  3F07 A;  3MZ7 A;  5G10 A;  3ZNS A;  1ZPG A;  3F80 A;  4IXU A;  3C0Z A;  5G0J A;  4BZ6 A;  1D3V A;  1C3S A;  1ZZ1 A;  4Q3U A;  5EEN A;  1T5G A;  4IE2 A;  5IX0 A;  5RLA A;  5FCW A;  4Q3Q A;  3SFH A;  5JI5 A;  5EFB D;  4MYF A;  2VQW G;  1HQ5 A;  4QA1 A;  1T4R A;  4QA5 A;  3F06 A;  3Q9F A;  4FCK A;  5D1D A;  1TBL A;  5G12 A;  4RN1 A;  3EZT A;  4GSM A;  3LP7 A;  4MYL A;  3MAX A;  4Q40 A;  4ITY A;  1TBJ A;  2GH6 A;  3E6K A;  3Q9B A;  2PLL A;  2ZAV A;  5G0H A;  4BKX B;  2EF5 A;  3SL0 A;  3MZ6 A;  3MZ4 A;  3RLA A;  4Q3T A;  4Q42 A;  4QA3 A;  3E8Q A;  4HXQ A;  2V5W A;  5A2S A;  4Q3R A;  5EFH A;  5THS A;  2V5X A;  3KV2 A;  3NIO A;  4MXR A;  4Q3P A;  3TH7 A;  4CQF A;  1WVB A;  2VQJ A;  5DC8 A;  5THU A;  5EF8 A;  1T67 A;  3M1R A;  3C0Y A;  4IXV A;  1TBH A;  3F0R A;  4A69 A;  3TF3 A;  3SJT A;  3MJL A;  1GQ6 A;  1W22 A;  3LHL A;  1P8N A;  3E9B A;  3MMR A;  5EEM A;  1WVA A;  1HQH A;  4RN0 A;  5DC7 A;  2EF4 A;  4G3H A;  5THT A;  4CBT A;  1GQ7 A;  3EWF A;  4ZUR A;  4BZ8 A;  3ZNR A;  2VQM A;  4RHI A;  1TA1 A;  1C3R A;  1HQG A;  2VQV A;  4LY1 A;  4MYN A;  2AEB A;  3Q9C A;  4RHJ A;  4QA6 A;  4MYK A;  4ZUN A;  4QA0 A;  1P8Q A;  1T64 A;  4Q3V A;  2VCG A;  4ZUP A;  5LI3 A;  4FCI A;  4RN2 A;  4IE1 A;  1RLA A;  4QA7 A;  4IU0 A;  5G0G A;  5ICN B;  1HQF A;  2A0M A;  5THV A;  4ZUQ A;  5G11 A;  1P8O A;  5HJ9 A;  4IU4 A;  4GSZ A;  1P8R A;  4HZE A;  2VQO A;  1XFK A;  3THE A;  3MFV A;  3GMZ A;  1C3P A;  3SKK A;  5G17 A;  1WOH A;  1VKG A;  5D1B A;  1T69 A;  3Q9E A;  4IE3 A;  4DZ4 A;  1P8P A;  2VQQ A;  5DC6 A;  3DJ8 A;  5DC5 A;  4Q41 A;  3MFW A;  4QA4 A;  5EEK A;  4LXZ A;  1ZPE A;  4BZ9 A;  4QA2 A;  3C10 A;  3E6V A;  2PHA A;  3E8Z A;  3SFF A;  4GWD A;  4I06 A;  5FUE A;  3EZP A;  4ZUO A;  1WOI A;  1T4S A;  4GSV A;  4ZUM A;  5G1A A;  5G1B A;  4RHL A;  1HQX A;  4HWW A;  4RLA A;  4IU5 A;  4RHM A;  5G3W A;  1T5F A;  4BZ7 A;  4CEV A;  3PZL A;  1PQ3 A;  3NIQ A;  5EF7 A;  5IWG A;  4Q3R C;  5EFJ D;  1P8S A;  1ZZ0 A;  3EW8 A;  5G13 A;  4CBY A;  3RQD A;  5HJA A;  5EFK B;  1CEV A;  2RLA A;  2PHO A;  1WOG A;  5CEV A;  2CEV A; 
#chains in the Genus database with same CATH homology
 3MZ3 A;  4BZ5 A;  5BWZ A;  5EFN A;  5D1C A;  5EEI A;  3MEN A;  5G0Y A;  1ZZ3 A;  5EEF A;  5G0I A;  5EFG A;  5G0X A;  5G1C A;  3F07 A;  3MZ7 A;  5G10 A;  3ZNS A;  3C0Z A;  5G0J A;  4BZ6 A;  1C3S A;  1ZZ1 A;  5EEN A;  3SFH A;  5IX0 A;  5FCW A;  5JI5 A;  5EFB D;  2VQW G;  4QA1 A;  4QA5 A;  3F06 A;  3Q9F A;  5D1D A;  5G12 A;  4RN1 A;  3EZT A;  3MAX A;  2GH6 A;  3Q9B A;  5G0H A;  4BKX B;  3MZ6 A;  3MZ4 A;  4QA3 A;  2V5W A;  5A2S A;  5EFH A;  5THS A;  2V5X A;  4CQF A;  5DC8 A;  2VQJ A;  5THU A;  5EF8 A;  1T67 A;  4A69 A;  3C0Y A;  3F0R A;  1W22 A;  5EEM A;  5DC7 A;  4RN0 A;  5THT A;  4CBT A;  3EWF A;  4ZUR A;  4BZ8 A;  3ZNR A;  2VQM A;  1C3R A;  2VQV A;  4LY1 A;  3Q9C A;  4QA6 A;  4ZUN A;  4QA0 A;  1T64 A;  2VCG A;  4ZUP A;  5LI3 A;  4RN2 A;  4QA7 A;  5G0G A;  5ICN B;  5THV A;  4ZUQ A;  5G11 A;  2VQO A;  1C3P A;  5G17 A;  1VKG A;  5D1B A;  1T69 A;  3Q9E A;  2VQQ A;  5DC6 A;  5DC5 A;  4QA4 A;  5EEK A;  4LXZ A;  4BZ9 A;  4QA2 A;  3C10 A;  3SFF A;  5FUE A;  3EZP A;  4ZUO A;  5G1A A;  4ZUM A;  5G1B A;  5G3W A;  4BZ7 A;  5EF7 A;  5IWG A;  5EFJ D;  1ZZ0 A;  4CBY A;  3EW8 A;  5G13 A;  3RQD A;  5EFK B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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