5G38A

Psbo subunit of photosystem ii, beta barrel domain at 100k, ph 6
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
172
structure length
172
Chain Sequence
CPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKENGEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVNGTKGQISLNVAKVDGRTGEIAGTFESEQLSNGHEVKIQGVFYASIEPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
source organism Thermosynechococcus elongatus
publication title Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches
pubmed doi rcsb
molecule keywords PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
total genus 32
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2016-04-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5g38A00
4PJ0O 3A0HO 5B66O 5KAIO 5G3AA 3WU2O 3A0BO 5GTHO 2AXTO 3KZIO 5G39A 5G38A 4IL6O 5E79O 5H2FO 5KAFO 5GTIO 5B5EO 4UB8O 4UB6O 3JCUO 5TISO 1S5LO
chains in the Genus database with same CATH superfamily
4FT6A 1GFNA 3AAEA 1THQA 2F1TA 4AYNA 3DWOX 3JTYA 4O3ZA 5JDPA 4FRTA 2R89A 4K3BA 3DA3A 1PRNA 2X9KA 3QRCA 5PRNA 2ERVA 2Y2XA 3A0BO 2ZLDA 1ZHZA 5G26A 2Y0HA 5DL8A 2WJRA 2IWWA 2PORA 2XE3A 1GFQA 5G39A 3VY9X 4FSOA 4FRXA 4D5UA 2F1VA 3T20A 3UPGA 3HW9A 3SYSA 3VE1A 4RLBA 3AA7B 4FZLA 4AKMA 2R4OA 3POQA 4C4VA 3LK2B 3LK42 3QRAA 2R4NA 3PQSA 2XTQA 5GV0A 5GTIO 2R8AA 3AA6A 4FUVA 4N75A 5DL6A 1PHOA 4PUXA 5KAFO 1QJ9A 2WJQA 3GP6A 2KDYA 3HOEA 2FGQX 3LK41 1IZNA 5FVNA 5AFUK 2KC0A 2KXPA 2R88A 2Y0LA 1MM5A 3DA4A 5D5DA 2QTKA 1S5LO 2GE4A 4E1TA 2R4LA 3AA0A 4FZMA 2XG6A 4PR7A 5DL7A 4LSHA 5B66O 2KZ7A 3VZWX 3WI5A 4Z3TA 2ODJA 4D65A 6PRNA 3AAEB 3HOLA 5T5FA 3T24A 4RJWA 4AKRA 1HXTA 2Y7SA 2J1NA 1OPFA 3VZTX 4O3YA 2ZFGA 2XE2A 3C5OA 4N58A 3PGUA 4AFKA 4C00A 3KZIO 4AUIA 4F4BA 5DL5A 3VE2A 3AA1A 5ADXK 3K19A 4LSEA 1ZHXA 2WVPA 4LSFA 1P4TA 2W80C 4G76A 5H2FO 2X27X 2N2LA 3PGRA 4XNLA 2N2MA 2OMFA 2IWVA 1T1LA 5B5EO 3SY7A 2F1CX 4C4VB 1BH3A 2M07A 4UB8O 1MM4A 1ZHWA 3PORA 4QQ1A 1BT9A 1E54A 2JQYA 2XTRA 4K3CA 5TISO 3T0SA 4KR4A 4RJXA 2MHLA 2JMMA 5IYUA 4RLCA 3V8UA 1G90A 4PJ0O 3NSGA 1IZNB 3LK3B 1Q9GA 3NJTA 4XNKA 4E1SA 2YPVA 1ZHTA 3O0EA 2K0LA 3VY8X 3AA0B 3DWNA 1QJ8A 4FMSA 4O49A 4GCQA 4O4XA 5G3AA 5KAIO 2FGRA 2KZ7B 4GCPA 3WU2O 3SZVA 3SY9A 3PGSA 1GFOA 4GCSA 4AKRB 3PF1A 3POXA 1OSMA 4GHBA 5AFUL 4JCHA 3BRZA 3G7GA 5G38A 3AAAA 3UU2A 3VZUX 3TZGA 4AYDC 4FOZA 2J4UP 3AA1B 3UAQA 4FZNA 4AZLA 1T16A 4GF4A 4O3XB 4RL9A 3POUA 4FSPA 1HXUA 3EMNX 2XE5A 3BRYA 1GFMA 3AA6B 4KR8A 2M06A 3RBHA 4BUMX 1H6S1 1YS5A 2LFUA 3SZDA 3A0HO 4KRAA 4O3WA 5ADXL 3SYBA 2KXPB 1BXWA 3DZMA 4FQEA 2XE1A 4LSIA 2MNHA 1QJPA 4N59A 1HXXA 3PRNA 3HWBA 3PQUA 5GTHO 1ORMA 2AXTO 3AA7A 4G75A 3WI4A 4AYMC 4C69X 7PRNA 4JFBA 1GFPA 3LK2A 2XMXA 4D64A 2K4TA 1Q9FA 4IL6O 4FESA 5E79O 2R4PA 4B61A 8PRNA 4AYEC 3AAAB 2YNKA 2O4VA 2W81C 1MPFA 4O4UA 3BS0A 1ZHYA 2LHFA 3KVDD 5EE2A 4UB6O 3LK3A 3A2SX 4N74A 3JCUO 2PRNA 4CTDA 4AYID 2Y0KA 3FYXA 4U9CA
chains in the Genus database with same CATH topology
4PJ0O 3A0HO 5B66O 5KAIO 5G3AA 3WU2O 3A0BO 5GTHO 2AXTO 3KZIO 5G39A 5G38A 4IL6O 5E79O 5H2FO 5KAFO 5GTIO 5B5EO 4UB8O 4UB6O 3JCUO 5TISO 1S5LO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PJ0 O;  3A0H O;  5B66 O;  5KAI O;  5G3A A;  3WU2 O;  3A0B O;  5GTH O;  2AXT O;  3KZI O;  5G39 A;  5G38 A;  4IL6 O;  5E79 O;  5H2F O;  5KAF O;  5GTI O;  5B5E O;  4UB8 O;  4UB6 O;  3JCU O;  5TIS O;  1S5L O; 
#chains in the Genus database with same CATH topology
 4FT6 A;  1GFN A;  3AAE A;  1THQ A;  2F1T A;  4AYN A;  3DWO X;  3JTY A;  4O3Z A;  5JDP A;  4FRT A;  2R89 A;  4K3B A;  3DA3 A;  1PRN A;  2X9K A;  3QRC A;  5PRN A;  2ERV A;  2Y2X A;  3A0B O;  2ZLD A;  1ZHZ A;  5G26 A;  2Y0H A;  5DL8 A;  2WJR A;  2IWW A;  2POR A;  2XE3 A;  1GFQ A;  5G39 A;  3VY9 X;  4FSO A;  4FRX A;  4D5U A;  2F1V A;  3T20 A;  3UPG A;  3HW9 A;  3SYS A;  3VE1 A;  4RLB A;  3AA7 B;  4FZL A;  4AKM A;  2R4O A;  3POQ A;  4C4V A;  3LK2 B;  3LK4 2;  3QRA A;  2R4N A;  3PQS A;  2XTQ A;  5GV0 A;  5GTI O;  2R8A A;  3AA6 A;  4FUV A;  4N75 A;  5DL6 A;  1PHO A;  4PUX A;  5KAF O;  1QJ9 A;  2WJQ A;  3GP6 A;  2KDY A;  3HOE A;  2FGQ X;  3LK4 1;  1IZN A;  5FVN A;  5AFU K;  2KC0 A;  2KXP A;  2R88 A;  2Y0L A;  1MM5 A;  3DA4 A;  5D5D A;  2QTK A;  1S5L O;  2GE4 A;  4E1T A;  2R4L A;  3AA0 A;  4FZM A;  2XG6 A;  4PR7 A;  5DL7 A;  4LSH A;  5B66 O;  2KZ7 A;  3VZW X;  3WI5 A;  4Z3T A;  2ODJ A;  4D65 A;  6PRN A;  3AAE B;  3HOL A;  5T5F A;  3T24 A;  4RJW A;  4AKR A;  1HXT A;  2Y7S A;  2J1N A;  1OPF A;  3VZT X;  4O3Y A;  2ZFG A;  2XE2 A;  3C5O A;  4N58 A;  3PGU A;  4AFK A;  4C00 A;  3KZI O;  4AUI A;  4F4B A;  5DL5 A;  3VE2 A;  3AA1 A;  5ADX K;  3K19 A;  4LSE A;  1ZHX A;  2WVP A;  4LSF A;  1P4T A;  2W80 C;  4G76 A;  5H2F O;  2X27 X;  2N2L A;  3PGR A;  4XNL A;  2N2M A;  2OMF A;  2IWV A;  1T1L A;  5B5E O;  3SY7 A;  2F1C X;  4C4V B;  1BH3 A;  2M07 A;  4UB8 O;  1MM4 A;  1ZHW A;  3POR A;  4QQ1 A;  1BT9 A;  1E54 A;  2JQY A;  2XTR A;  4K3C A;  5TIS O;  3T0S A;  4KR4 A;  4RJX A;  2MHL A;  2JMM A;  5IYU A;  4RLC A;  3V8U A;  1G90 A;  4PJ0 O;  3NSG A;  1IZN B;  3LK3 B;  1Q9G A;  3NJT A;  4XNK A;  4E1S A;  2YPV A;  1ZHT A;  3O0E A;  2K0L A;  3VY8 X;  3AA0 B;  3DWN A;  1QJ8 A;  4FMS A;  4O49 A;  4GCQ A;  4O4X A;  5G3A A;  5KAI O;  2FGR A;  2KZ7 B;  4GCP A;  3WU2 O;  3SZV A;  3SY9 A;  3PGS A;  1GFO A;  4GCS A;  4AKR B;  3PF1 A;  3POX A;  1OSM A;  4GHB A;  5AFU L;  4JCH A;  3BRZ A;  3G7G A;  5G38 A;  3AAA A;  3UU2 A;  3VZU X;  3TZG A;  4AYD C;  4FOZ A;  2J4U P;  3AA1 B;  3UAQ A;  4FZN A;  4AZL A;  1T16 A;  4GF4 A;  4O3X B;  4RL9 A;  3POU A;  4FSP A;  1HXU A;  3EMN X;  2XE5 A;  3BRY A;  1GFM A;  3AA6 B;  4KR8 A;  2M06 A;  3RBH A;  4BUM X;  1H6S 1;  1YS5 A;  2LFU A;  3SZD A;  3A0H O;  4KRA A;  4O3W A;  5ADX L;  3SYB A;  2KXP B;  1BXW A;  3DZM A;  4FQE A;  2XE1 A;  4LSI A;  2MNH A;  1QJP A;  4N59 A;  1HXX A;  3PRN A;  3HWB A;  3PQU A;  5GTH O;  1ORM A;  2AXT O;  3AA7 A;  4G75 A;  3WI4 A;  4AYM C;  4C69 X;  7PRN A;  4JFB A;  1GFP A;  3LK2 A;  2XMX A;  4D64 A;  2K4T A;  1Q9F A;  4IL6 O;  4FES A;  5E79 O;  2R4P A;  4B61 A;  8PRN A;  4AYE C;  3AAA B;  2YNK A;  2O4V A;  2W81 C;  1MPF A;  4O4U A;  3BS0 A;  1ZHY A;  2LHF A;  3KVD D;  5EE2 A;  4UB6 O;  3LK3 A;  3A2S X;  4N74 A;  3JCU O;  2PRN A;  4CTD A;  4AYI D;  2Y0K A;  3FYX A;  4U9C A; 
#chains in the Genus database with same CATH homology
 4PJ0 O;  3A0H O;  5B66 O;  5KAI O;  5G3A A;  3WU2 O;  3A0B O;  5GTH O;  2AXT O;  3KZI O;  5G39 A;  5G38 A;  4IL6 O;  5E79 O;  5H2F O;  5KAF O;  5GTI O;  5B5E O;  4UB8 O;  4UB6 O;  3JCU O;  5TIS O;  1S5L O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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