5G38A

Psbo subunit of photosystem ii, beta barrel domain at 100k, ph 6
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
172
structure length
172
Chain Sequence
b'CPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKENGEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVNGTKGQISLNVAKVDGRTGEIAGTFESEQLSNGHEVKIQGVFYASIEPA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches
pubmed doi rcsb
molecule keywords PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
source organism Thermosynechococcus elongatus
molecule tags Photosynthesis
total genus 32
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2016-04-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5g38A00
3KZIO 5KAIO 5G39A 4UB6O 5TISO 4PJ0O 3WU2O 3A0BO 5GTHO 3JCUO 2AXTO 5B66O 5G3AA 4IL6O 4UB8O 5GTIO 5E79O 1S5LO 3A0HO 5G38A 5B5EO 5H2FO 5KAFO
chains in the Genus database with same CATH superfamily
1OSMA 1MM5A 2Y0HA 3TZGA 1MPFA 3UU2A 4RLBA 3WU2O 2KDYA 3LK2A 3QRCA 5GTHO 1MM4A 2ODJA 2XG6A 4FZNA 4XNKA 2ZLDA 3AA7A 1GFQA 1IZNB 1ZHYA 4KR4A 4LSIA 3DWOX 2KC0A 2R4OA 1QJ8A 4FZMA 4JFBA 2R4LA 4G75A 1GFMA 3JTYA 4FQEA 3V8UA 4Z3TA 3POUA 1BXWA 2FGQX 3PQSA 2XTRA 2XE2A 4XNLA 3HW9A 4GCPA 4LSEA 5G26A 4C00A 3A0HO 2X27X 1PRNA 1Q9GA 2N2MA 3AA7B 3UPGA 4N59A 2F1CX 2O4VA 4O49A 3NSGA 5B5EO 2LFUA 4O4UA 1YS5A 4D64A 2QTKA 3GP6A 3EMNX 2XE3A 1IZNA 1ZHWA 3FYXA 5KAIO 3VZTX 4UB6O 2MNHA 3BRYA 4QQ1A 5IYUA 4FUVA 3K19A 4PJ0O 3PORA 1QJPA 2Y0LA 2X9KA 3A0BO 4O3XB 4O3ZA 3T24A 5GV0A 2JMMA 2WJQA 3VZUX 2XE5A 1G90A 3SYSA 1T16A 3UAQA 4E1TA 1E54A 1HXTA 1Q9FA 2PORA 3A2SX 3RBHA 5AFUL 3KVDD 3VZWX 1ORMA 4N58A 4AUIA 2KXPB 4IL6O 4B61A 3AA1B 4AKRA 2K0LA 4AZLA 3AAEA 1HXXA 8PRNA 1ZHXA 2OMFA 4K3CA 3DA3A 5DL6A 3SYBA 3LK3B 2XTQA 3AA0B 2Y2XA 3QRAA 5H2FO 2KZ7B 2JQYA 4FRXA 3VY8X 2Y7SA 4AKRB 1THQA 3KZIO 2ZFGA 4AYMC 1GFOA 3BS0A 1ZHTA 3POQA 5G39A 5ADXK 3AAEB 2GE4A 4FZLA 4KRAA 4U9CA 4E1SA 4FRTA 2KXPA 2YNKA 2IWWA 3C5OA 3AA1A 3JCUO 2ERVA 4KR8A 3G7GA 3VY9X 3O0EA 2AXTO 4FSOA 3PF1A 4AYNA 2R4NA 3BRZA 2MHLA 5G3AA 1GFNA 2FGRA 4F4BA 3PGRA 3PQUA 3POXA 3LK3A 4PUXA 4AFKA 2XE1A 3AA0A 4O3WA 4GCQA 2KZ7A 1T1LA 4UB8O 5GTIO 4FT6A 2W80C 4RLCA 4FESA 4LSHA 3SY9A 3LK41 4BUMX 4RJWA 2R89A 5AFUK 3HWBA 4FSPA 3DZMA 2R4PA 1PHOA 1ZHZA 5DL5A 2R88A 1QJ9A 4K3BA 3T0SA 5DL7A 2XMXA 3HOEA 3WI4A 3SZDA 5KAFO 4AYEC 2WJRA 4FOZA 3HOLA 2M06A 2N2LA 3AA6A 1BH3A 4FMSA 4RL9A 3WI5A 4C4VB 4D65A 3AAAB 5TISO 2K4TA 2J4UP 3PGUA 1BT9A 2F1TA 1OPFA 5FVNA 4C69X 4N74A 4D5UA 3T20A 5EE2A 2Y0KA 1GFPA 4GF4A 5B66O 2LHFA 4CTDA 3NJTA 7PRNA 3AA6B 4LSFA 5PRNA 3LK42 3SY7A 4AYID 4JCHA 5DL8A 3VE1A 3PGSA 1P4TA 3SZVA 3LK2B 1H6S1 4O4XA 5JDPA 6PRNA 5T5FA 1HXUA 5E79O 4AKMA 1S5LO 4G76A 4N75A 2W81C 2WVPA 3PRNA 2PRNA 2YPVA 3VE2A 4C4VA 5ADXL 2R8AA 2F1VA 3AAAA 4GHBA 4RJXA 5D5DA 2M07A 4O3YA 4PR7A 5G38A 4AYDC 2J1NA 3DA4A 3DWNA 2IWVA 4GCSA
chains in the Genus database with same CATH topology
3KZIO 5KAIO 5G39A 4UB6O 5TISO 4PJ0O 3WU2O 3A0BO 5GTHO 3JCUO 2AXTO 5B66O 5G3AA 4IL6O 4UB8O 5GTIO 5E79O 1S5LO 3A0HO 5G38A 5B5EO 5H2FO 5KAFO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KZI O;  5KAI O;  5G39 A;  4UB6 O;  5TIS O;  4PJ0 O;  3WU2 O;  3A0B O;  5GTH O;  3JCU O;  2AXT O;  5B66 O;  5G3A A;  4IL6 O;  4UB8 O;  5GTI O;  5E79 O;  1S5L O;  3A0H O;  5G38 A;  5B5E O;  5H2F O;  5KAF O; 
#chains in the Genus database with same CATH topology
 1OSM A;  1MM5 A;  2Y0H A;  3TZG A;  1MPF A;  3UU2 A;  4RLB A;  3WU2 O;  2KDY A;  3LK2 A;  3QRC A;  5GTH O;  1MM4 A;  2ODJ A;  2XG6 A;  4FZN A;  4XNK A;  2ZLD A;  3AA7 A;  1GFQ A;  1IZN B;  1ZHY A;  4KR4 A;  4LSI A;  3DWO X;  2KC0 A;  2R4O A;  1QJ8 A;  4FZM A;  4JFB A;  2R4L A;  4G75 A;  1GFM A;  3JTY A;  4FQE A;  3V8U A;  4Z3T A;  3POU A;  1BXW A;  2FGQ X;  3PQS A;  2XTR A;  2XE2 A;  4XNL A;  3HW9 A;  4GCP A;  4LSE A;  5G26 A;  4C00 A;  3A0H O;  2X27 X;  1PRN A;  1Q9G A;  2N2M A;  3AA7 B;  3UPG A;  4N59 A;  2F1C X;  2O4V A;  4O49 A;  3NSG A;  5B5E O;  2LFU A;  4O4U A;  1YS5 A;  4D64 A;  2QTK A;  3GP6 A;  3EMN X;  2XE3 A;  1IZN A;  1ZHW A;  3FYX A;  5KAI O;  3VZT X;  4UB6 O;  2MNH A;  3BRY A;  4QQ1 A;  5IYU A;  4FUV A;  3K19 A;  4PJ0 O;  3POR A;  1QJP A;  2Y0L A;  2X9K A;  3A0B O;  4O3X B;  4O3Z A;  3T24 A;  5GV0 A;  2JMM A;  2WJQ A;  3VZU X;  2XE5 A;  1G90 A;  3SYS A;  1T16 A;  3UAQ A;  4E1T A;  1E54 A;  1HXT A;  1Q9F A;  2POR A;  3A2S X;  3RBH A;  5AFU L;  3KVD D;  3VZW X;  1ORM A;  4N58 A;  4AUI A;  2KXP B;  4IL6 O;  4B61 A;  3AA1 B;  4AKR A;  2K0L A;  4AZL A;  3AAE A;  1HXX A;  8PRN A;  1ZHX A;  2OMF A;  4K3C A;  3DA3 A;  5DL6 A;  3SYB A;  3LK3 B;  2XTQ A;  3AA0 B;  2Y2X A;  3QRA A;  5H2F O;  2KZ7 B;  2JQY A;  4FRX A;  3VY8 X;  2Y7S A;  4AKR B;  1THQ A;  3KZI O;  2ZFG A;  4AYM C;  1GFO A;  3BS0 A;  1ZHT A;  3POQ A;  5G39 A;  5ADX K;  3AAE B;  2GE4 A;  4FZL A;  4KRA A;  4U9C A;  4E1S A;  4FRT A;  2KXP A;  2YNK A;  2IWW A;  3C5O A;  3AA1 A;  3JCU O;  2ERV A;  4KR8 A;  3G7G A;  3VY9 X;  3O0E A;  2AXT O;  4FSO A;  3PF1 A;  4AYN A;  2R4N A;  3BRZ A;  2MHL A;  5G3A A;  1GFN A;  2FGR A;  4F4B A;  3PGR A;  3PQU A;  3POX A;  3LK3 A;  4PUX A;  4AFK A;  2XE1 A;  3AA0 A;  4O3W A;  4GCQ A;  2KZ7 A;  1T1L A;  4UB8 O;  5GTI O;  4FT6 A;  2W80 C;  4RLC A;  4FES A;  4LSH A;  3SY9 A;  3LK4 1;  4BUM X;  4RJW A;  2R89 A;  5AFU K;  3HWB A;  4FSP A;  3DZM A;  2R4P A;  1PHO A;  1ZHZ A;  5DL5 A;  2R88 A;  1QJ9 A;  4K3B A;  3T0S A;  5DL7 A;  2XMX A;  3HOE A;  3WI4 A;  3SZD A;  5KAF O;  4AYE C;  2WJR A;  4FOZ A;  3HOL A;  2M06 A;  2N2L A;  3AA6 A;  1BH3 A;  4FMS A;  4RL9 A;  3WI5 A;  4C4V B;  4D65 A;  3AAA B;  5TIS O;  2K4T A;  2J4U P;  3PGU A;  1BT9 A;  2F1T A;  1OPF A;  5FVN A;  4C69 X;  4N74 A;  4D5U A;  3T20 A;  5EE2 A;  2Y0K A;  1GFP A;  4GF4 A;  5B66 O;  2LHF A;  4CTD A;  3NJT A;  7PRN A;  3AA6 B;  4LSF A;  5PRN A;  3LK4 2;  3SY7 A;  4AYI D;  4JCH A;  5DL8 A;  3VE1 A;  3PGS A;  1P4T A;  3SZV A;  3LK2 B;  1H6S 1;  4O4X A;  5JDP A;  6PRN A;  5T5F A;  1HXU A;  5E79 O;  4AKM A;  1S5L O;  4G76 A;  4N75 A;  2W81 C;  2WVP A;  3PRN A;  2PRN A;  2YPV A;  3VE2 A;  4C4V A;  5ADX L;  2R8A A;  2F1V A;  3AAA A;  4GHB A;  4RJX A;  5D5D A;  2M07 A;  4O3Y A;  4PR7 A;  5G38 A;  4AYD C;  2J1N A;  3DA4 A;  3DWN A;  2IWV A;  4GCS A; 
#chains in the Genus database with same CATH homology
 3KZI O;  5KAI O;  5G39 A;  4UB6 O;  5TIS O;  4PJ0 O;  3WU2 O;  3A0B O;  5GTH O;  3JCU O;  2AXT O;  5B66 O;  5G3A A;  4IL6 O;  4UB8 O;  5GTI O;  5E79 O;  1S5L O;  3A0H O;  5G38 A;  5B5E O;  5H2F O;  5KAF O; 
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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