5G38A

Psbo subunit of photosystem ii, beta barrel domain at 100k, ph 6
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
172
structure length
172
Chain Sequence
CPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKENGEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVNGTKGQISLNVAKVDGRTGEIAGTFESEQLSNGHEVKIQGVFYASIEPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
publication title Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches
pubmed doi rcsb
source organism Thermosynechococcus elongatus
total genus 32
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2016-04-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5g38A00
3A0HO 5E79O 5GTIO 4UB6O 5G39A 3JCUO 1S5LO 2AXTO 4UB8O 5B66O 5B5EO 5KAIO 4PJ0O 5GTHO 4IL6O 5G38A 3A0BO 3WU2O 5TISO 5H2FO 5KAFO 3KZIO 5G3AA
chains in the Genus database with same CATH superfamily
6PRNA 1BXWA 3HW9A 4G75A 5DL6A 4AYDC 3PQSA 1IZNB 4UB6O 4Z3TA 2XE5A 1S5LO 3UAQA 4E1TA 1QJ8A 1PHOA 5B66O 2IWWA 2W81C 3AA7A 5B5EO 1MM4A 4N58A 5T5FA 3SZVA 2WVPA 2XTRA 3BRYA 3LK2B 1G90A 3PGUA 5GV0A 4FOZA 4AFKA 3PQUA 2XTQA 3AAAA 4AYMC 4D65A 5ADXK 4KR8A 4PUXA 2IWVA 3DZMA 2J4UP 4GCPA 4K3CA 3VE1A 5G38A 3A0BO 2KC0A 3QRAA 3T24A 5TISO 1GFQA 4O3XB 5FVNA 3K19A 3RBHA 3VY8X 2F1CX 3DA3A 4FMSA 2ODJA 4FSPA 5KAFO 3DWNA 2R4NA 3BS0A 4QQ1A 4C4VA 5JDPA 4C69X 2KXPB 1ORMA 3KVDD 3VZUX 4AYID 4FSOA 5AFUK 3T20A 1GFMA 3A0HO 4O3ZA 4F4BA 1HXXA 1QJPA 2N2LA 3SY7A 5GTIO 4RL9A 4E1SA 3SYSA 4N59A 1BT9A 1IZNA 2Y0KA 3JCUO 4G76A 4KRAA 2M06A 4B61A 4CTDA 7PRNA 3GP6A 3PGSA 1HXTA 3HOEA 4O49A 2XE3A 5G3AA 5KAIO 4AZLA 3LK2A 4FT6A 3PGRA 2M07A 2K4TA 4RJWA 5EE2A 3V8UA 2R88A 3O0EA 2ZLDA 4IL6O 4FUVA 1H6S1 4LSEA 2PRNA 3AA6B 1GFPA 3HWBA 3VZWX 3POXA 4AKRB 1MPFA 1GFOA 2J1NA 5GTHO 2KZ7A 2QTKA 3VY9X 4JCHA 3FYXA 3TZGA 1BH3A 3AAEB 5IYUA 3AA1B 2KXPA 2LHFA 2JMMA 1GFNA 4N75A 1Q9GA 3VZTX 1T1LA 2K0LA 5PRNA 2R8AA 5E79O 2X9KA 2YNKA 3PORA 4BUMX 5G39A 4O4XA 3UPGA 2O4VA 3LK42 4UB8O 2W80C 4AYEC 2XE2A 4RJXA 4RLBA 2XMXA 3WI5A 2ERVA 3PF1A 4O4UA 3C5OA 1P4TA 2OMFA 1ZHWA 2WJQA 2XG6A 2PORA 3POUA 4KR4A 4PJ0O 3BRZA 4C00A 2LFUA 3DWOX 1MM5A 3NJTA 2F1VA 2ZFGA 4O3WA 4K3BA 3WI4A 3AA6A 3LK41 4AKRA 3WU2O 1QJ9A 2Y7SA 3LK3B 2X27X 4FZMA 3SZDA 5ADXL 4GCSA 4FQEA 4FRTA 4AUIA 4LSFA 1OSMA 2GE4A 3AA0B 2Y2XA 1ZHXA 3AAEA 3KZIO 4AYNA 5DL8A 4C4VB 3AA1A 3SY9A 3SYBA 2FGQX 4XNKA 2N2MA 1E54A 2MHLA 2FGRA 1Q9FA 3A2SX 3G7GA 4PR7A 4RLCA 1ZHZA 5AFUL 3HOLA 3POQA 2XE1A 2AXTO 4LSHA 4U9CA 3PRNA 3JTYA 3AA7B 1OPFA 4N74A 4D64A 5DL7A 4JFBA 1T16A 4D5UA 3AAAB 1ZHYA 2KDYA 4FRXA 1YS5A 4GF4A 2F1TA 5D5DA 3NSGA 5G26A 1THQA 2Y0HA 3VE2A 2MNHA 4O3YA 3T0SA 4AKMA 1ZHTA 2KZ7B 3UU2A 3LK3A 1PRNA 2R89A 4FZLA 4GHBA 4XNLA 5H2FO 4LSIA 2Y0LA 2YPVA 2R4PA 3DA4A 4GCQA 2WJRA 5DL5A 2R4LA 3AA0A 4FESA 4FZNA 1HXUA 3QRCA 3EMNX 2JQYA 8PRNA 2R4OA
chains in the Genus database with same CATH topology
3A0HO 5E79O 5GTIO 4UB6O 5G39A 3JCUO 1S5LO 2AXTO 4UB8O 5B66O 5B5EO 5KAIO 4PJ0O 5GTHO 4IL6O 5G38A 3A0BO 3WU2O 5TISO 5H2FO 5KAFO 3KZIO 5G3AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A0H O;  5E79 O;  5GTI O;  4UB6 O;  5G39 A;  3JCU O;  1S5L O;  2AXT O;  4UB8 O;  5B66 O;  5B5E O;  5KAI O;  4PJ0 O;  5GTH O;  4IL6 O;  5G38 A;  3A0B O;  3WU2 O;  5TIS O;  5H2F O;  5KAF O;  3KZI O;  5G3A A; 
#chains in the Genus database with same CATH topology
 6PRN A;  1BXW A;  3HW9 A;  4G75 A;  5DL6 A;  4AYD C;  3PQS A;  1IZN B;  4UB6 O;  4Z3T A;  2XE5 A;  1S5L O;  3UAQ A;  4E1T A;  1QJ8 A;  1PHO A;  5B66 O;  2IWW A;  2W81 C;  3AA7 A;  5B5E O;  1MM4 A;  4N58 A;  5T5F A;  3SZV A;  2WVP A;  2XTR A;  3BRY A;  3LK2 B;  1G90 A;  3PGU A;  5GV0 A;  4FOZ A;  4AFK A;  3PQU A;  2XTQ A;  3AAA A;  4AYM C;  4D65 A;  5ADX K;  4KR8 A;  4PUX A;  2IWV A;  3DZM A;  2J4U P;  4GCP A;  4K3C A;  3VE1 A;  5G38 A;  3A0B O;  2KC0 A;  3QRA A;  3T24 A;  5TIS O;  1GFQ A;  4O3X B;  5FVN A;  3K19 A;  3RBH A;  3VY8 X;  2F1C X;  3DA3 A;  4FMS A;  2ODJ A;  4FSP A;  5KAF O;  3DWN A;  2R4N A;  3BS0 A;  4QQ1 A;  4C4V A;  5JDP A;  4C69 X;  2KXP B;  1ORM A;  3KVD D;  3VZU X;  4AYI D;  4FSO A;  5AFU K;  3T20 A;  1GFM A;  3A0H O;  4O3Z A;  4F4B A;  1HXX A;  1QJP A;  2N2L A;  3SY7 A;  5GTI O;  4RL9 A;  4E1S A;  3SYS A;  4N59 A;  1BT9 A;  1IZN A;  2Y0K A;  3JCU O;  4G76 A;  4KRA A;  2M06 A;  4B61 A;  4CTD A;  7PRN A;  3GP6 A;  3PGS A;  1HXT A;  3HOE A;  4O49 A;  2XE3 A;  5G3A A;  5KAI O;  4AZL A;  3LK2 A;  4FT6 A;  3PGR A;  2M07 A;  2K4T A;  4RJW A;  5EE2 A;  3V8U A;  2R88 A;  3O0E A;  2ZLD A;  4IL6 O;  4FUV A;  1H6S 1;  4LSE A;  2PRN A;  3AA6 B;  1GFP A;  3HWB A;  3VZW X;  3POX A;  4AKR B;  1MPF A;  1GFO A;  2J1N A;  5GTH O;  2KZ7 A;  2QTK A;  3VY9 X;  4JCH A;  3FYX A;  3TZG A;  1BH3 A;  3AAE B;  5IYU A;  3AA1 B;  2KXP A;  2LHF A;  2JMM A;  1GFN A;  4N75 A;  1Q9G A;  3VZT X;  1T1L A;  2K0L A;  5PRN A;  2R8A A;  5E79 O;  2X9K A;  2YNK A;  3POR A;  4BUM X;  5G39 A;  4O4X A;  3UPG A;  2O4V A;  3LK4 2;  4UB8 O;  2W80 C;  4AYE C;  2XE2 A;  4RJX A;  4RLB A;  2XMX A;  3WI5 A;  2ERV A;  3PF1 A;  4O4U A;  3C5O A;  1P4T A;  2OMF A;  1ZHW A;  2WJQ A;  2XG6 A;  2POR A;  3POU A;  4KR4 A;  4PJ0 O;  3BRZ A;  4C00 A;  2LFU A;  3DWO X;  1MM5 A;  3NJT A;  2F1V A;  2ZFG A;  4O3W A;  4K3B A;  3WI4 A;  3AA6 A;  3LK4 1;  4AKR A;  3WU2 O;  1QJ9 A;  2Y7S A;  3LK3 B;  2X27 X;  4FZM A;  3SZD A;  5ADX L;  4GCS A;  4FQE A;  4FRT A;  4AUI A;  4LSF A;  1OSM A;  2GE4 A;  3AA0 B;  2Y2X A;  1ZHX A;  3AAE A;  3KZI O;  4AYN A;  5DL8 A;  4C4V B;  3AA1 A;  3SY9 A;  3SYB A;  2FGQ X;  4XNK A;  2N2M A;  1E54 A;  2MHL A;  2FGR A;  1Q9F A;  3A2S X;  3G7G A;  4PR7 A;  4RLC A;  1ZHZ A;  5AFU L;  3HOL A;  3POQ A;  2XE1 A;  2AXT O;  4LSH A;  4U9C A;  3PRN A;  3JTY A;  3AA7 B;  1OPF A;  4N74 A;  4D64 A;  5DL7 A;  4JFB A;  1T16 A;  4D5U A;  3AAA B;  1ZHY A;  2KDY A;  4FRX A;  1YS5 A;  4GF4 A;  2F1T A;  5D5D A;  3NSG A;  5G26 A;  1THQ A;  2Y0H A;  3VE2 A;  2MNH A;  4O3Y A;  3T0S A;  4AKM A;  1ZHT A;  2KZ7 B;  3UU2 A;  3LK3 A;  1PRN A;  2R89 A;  4FZL A;  4GHB A;  4XNL A;  5H2F O;  4LSI A;  2Y0L A;  2YPV A;  2R4P A;  3DA4 A;  4GCQ A;  2WJR A;  5DL5 A;  2R4L A;  3AA0 A;  4FES A;  4FZN A;  1HXU A;  3QRC A;  3EMN X;  2JQY A;  8PRN A;  2R4O A; 
#chains in the Genus database with same CATH homology
 3A0H O;  5E79 O;  5GTI O;  4UB6 O;  5G39 A;  3JCU O;  1S5L O;  2AXT O;  4UB8 O;  5B66 O;  5B5E O;  5KAI O;  4PJ0 O;  5GTH O;  4IL6 O;  5G38 A;  3A0B O;  3WU2 O;  5TIS O;  5H2F O;  5KAF O;  3KZI O;  5G3A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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