5G3AA

Psbo subunit of photosystem ii, beta barrel domain at 100k, ph 10
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
172
structure length
172
Chain Sequence
CPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKENGEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVNGTKGQISLNVAKVDGRTGEIAGTFESEQLSNGHEVKIQGVFYASIEPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
publication title Crystallographic and Computational Analysis of the Barrel Part of the Psbo Protein of Photosystem II -Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches
pubmed doi rcsb
source organism Thermosynechococcus elongatus
total genus 34
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2016-04-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5g3aA00
5E79O 2AXTO 3KZIO 5TISO 4IL6O 5KAIO 5KAFO 5B5EO 3JCUO 1S5LO 3A0HO 5B66O 3WU2O 5G3AA 5GTIO 5G38A 4UB8O 4PJ0O 5H2FO 5GTHO 4UB6O 3A0BO 5G39A
chains in the Genus database with same CATH superfamily
2YNKA 4FZMA 5E79O 2R89A 4GCQA 1PRNA 2F1TA 4JFBA 3SZVA 3AAAB 5DL7A 1ZHWA 3SYBA 1ZHYA 4IL6O 3VE2A 5KAFO 3HWBA 3AAAA 5DL8A 2IWVA 2WJQA 3T24A 3WI5A 3PRNA 3BRYA 2Y7SA 2J1NA 2KZ7B 3SYSA 4AFKA 3K19A 1MM5A 2KZ7A 3C5OA 2K0LA 3HW9A 5G38A 4CTDA 3TZGA 1BT9A 2ERVA 1ORMA 3VZTX 1G90A 5ADXL 1Q9FA 4O3YA 2ZFGA 4PR7A 2XMXA 4UB6O 3A0BO 3UU2A 4AKRB 5GV0A 4F4BA 5PRNA 5AFUL 5FVNA 4C00A 3DA4A 4FZLA 4AKRA 2X9KA 2YPVA 4PUXA 1MM4A 5T5FA 2M06A 2MHLA 3T20A 3KVDD 5DL5A 4O3XB 2GE4A 2K4TA 3KZIO 4FMSA 3AA6B 4FOZA 2Y0LA 5TISO 4B61A 2J4UP 5IYUA 2R4NA 2JQYA 5KAIO 4FUVA 3AA6A 4RLCA 4U9CA 5DL6A 1BXWA 2R8AA 3A0HO 3FYXA 5B66O 3O0EA 4E1TA 4FSPA 1OPFA 3POXA 5GTIO 3PGRA 4LSEA 3AAEB 3AA0B 1QJ8A 4AYNA 2ODJA 4O49A 1QJ9A 4GCPA 3DWOX 1T16A 2XTQA 2OMFA 3AAEA 3PORA 4KR8A 3VE1A 3VZWX 1OSMA 2XE5A 4O4XA 4N59A 4FESA 2N2MA 2WVPA 3SY7A 7PRNA 3UAQA 4D5UA 4XNKA 3VY9X 2ZLDA 4FQEA 2FGRA 3POUA 4GHBA 1H6S1 3NSGA 5AFUK 2FGQX 1PHOA 2QTKA 4FZNA 1HXUA 1GFOA 4QQ1A 1GFPA 4AYDC 1GFQA 3PGUA 4FRTA 1GFMA 4G76A 4RLBA 1HXTA 4AYMC 1GFNA 1ZHZA 4LSFA 4RL9A 2Y0HA 3PQUA 4G75A 4RJWA 3G7GA 3PQSA 4AZLA 4KRAA 5B5EO 4FSOA 3UPGA 3A2SX 3JCUO 1S5LO 1YS5A 3HOLA 1MPFA 1ZHTA 2KDYA 4LSHA 4N74A 4O4UA 4N75A 3WU2O 8PRNA 3QRCA 5EE2A 6PRNA 2XE1A 2XTRA 3GP6A 4K3BA 4BUMX 4FT6A 3DA3A 2KC0A 3LK3B 2MNHA 4GCSA 4UB8O 1BH3A 1THQA 3LK3A 2JMMA 4D64A 5H2FO 3AA0A 3LK41 5GTHO 5ADXK 3BRZA 3POQA 2XE3A 4AUIA 3JTYA 4GF4A 4XNLA 2AXTO 1QJPA 4N58A 3BS0A 2Y0KA 4K3CA 1T1LA 2W80C 1ZHXA 5D5DA 5G26A 4AKMA 4Z3TA 2IWWA 3PGSA 3RBHA 3SY9A 4E1SA 2R4PA 3AA1B 1HXXA 2LFUA 3SZDA 3VZUX 2XE2A 3AA1A 2W81C 3LK42 2F1CX 2R4LA 5JDPA 4AYID 1IZNB 2Y2XA 4KR4A 3QRAA 5G3AA 2R4OA 1IZNA 2LHFA 1E54A 2O4VA 4O3ZA 1P4TA 2KXPB 2PORA 3AA7B 3LK2B 2N2LA 2X27X 2M07A 3V8UA 1Q9GA 4D65A 4O3WA 3NJTA 2KXPA 3AA7A 3LK2A 4PJ0O 3EMNX 4C69X 3T0SA 4C4VB 4AYEC 2PRNA 2WJRA 3VY8X 2XG6A 4FRXA 4JCHA 3DZMA 3HOEA 4C4VA 4RJXA 4LSIA 2R88A 2F1VA 3PF1A 3WI4A 3DWNA 5G39A
chains in the Genus database with same CATH topology
5E79O 2AXTO 3KZIO 5TISO 4IL6O 5KAIO 5KAFO 5B5EO 3JCUO 1S5LO 3A0HO 5B66O 3WU2O 5G3AA 5GTIO 5G38A 4UB8O 4PJ0O 5H2FO 5GTHO 4UB6O 3A0BO 5G39A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E79 O;  2AXT O;  3KZI O;  5TIS O;  4IL6 O;  5KAI O;  5KAF O;  5B5E O;  3JCU O;  1S5L O;  3A0H O;  5B66 O;  3WU2 O;  5G3A A;  5GTI O;  5G38 A;  4UB8 O;  4PJ0 O;  5H2F O;  5GTH O;  4UB6 O;  3A0B O;  5G39 A; 
#chains in the Genus database with same CATH topology
 2YNK A;  4FZM A;  5E79 O;  2R89 A;  4GCQ A;  1PRN A;  2F1T A;  4JFB A;  3SZV A;  3AAA B;  5DL7 A;  1ZHW A;  3SYB A;  1ZHY A;  4IL6 O;  3VE2 A;  5KAF O;  3HWB A;  3AAA A;  5DL8 A;  2IWV A;  2WJQ A;  3T24 A;  3WI5 A;  3PRN A;  3BRY A;  2Y7S A;  2J1N A;  2KZ7 B;  3SYS A;  4AFK A;  3K19 A;  1MM5 A;  2KZ7 A;  3C5O A;  2K0L A;  3HW9 A;  5G38 A;  4CTD A;  3TZG A;  1BT9 A;  2ERV A;  1ORM A;  3VZT X;  1G90 A;  5ADX L;  1Q9F A;  4O3Y A;  2ZFG A;  4PR7 A;  2XMX A;  4UB6 O;  3A0B O;  3UU2 A;  4AKR B;  5GV0 A;  4F4B A;  5PRN A;  5AFU L;  5FVN A;  4C00 A;  3DA4 A;  4FZL A;  4AKR A;  2X9K A;  2YPV A;  4PUX A;  1MM4 A;  5T5F A;  2M06 A;  2MHL A;  3T20 A;  3KVD D;  5DL5 A;  4O3X B;  2GE4 A;  2K4T A;  3KZI O;  4FMS A;  3AA6 B;  4FOZ A;  2Y0L A;  5TIS O;  4B61 A;  2J4U P;  5IYU A;  2R4N A;  2JQY A;  5KAI O;  4FUV A;  3AA6 A;  4RLC A;  4U9C A;  5DL6 A;  1BXW A;  2R8A A;  3A0H O;  3FYX A;  5B66 O;  3O0E A;  4E1T A;  4FSP A;  1OPF A;  3POX A;  5GTI O;  3PGR A;  4LSE A;  3AAE B;  3AA0 B;  1QJ8 A;  4AYN A;  2ODJ A;  4O49 A;  1QJ9 A;  4GCP A;  3DWO X;  1T16 A;  2XTQ A;  2OMF A;  3AAE A;  3POR A;  4KR8 A;  3VE1 A;  3VZW X;  1OSM A;  2XE5 A;  4O4X A;  4N59 A;  4FES A;  2N2M A;  2WVP A;  3SY7 A;  7PRN A;  3UAQ A;  4D5U A;  4XNK A;  3VY9 X;  2ZLD A;  4FQE A;  2FGR A;  3POU A;  4GHB A;  1H6S 1;  3NSG A;  5AFU K;  2FGQ X;  1PHO A;  2QTK A;  4FZN A;  1HXU A;  1GFO A;  4QQ1 A;  1GFP A;  4AYD C;  1GFQ A;  3PGU A;  4FRT A;  1GFM A;  4G76 A;  4RLB A;  1HXT A;  4AYM C;  1GFN A;  1ZHZ A;  4LSF A;  4RL9 A;  2Y0H A;  3PQU A;  4G75 A;  4RJW A;  3G7G A;  3PQS A;  4AZL A;  4KRA A;  5B5E O;  4FSO A;  3UPG A;  3A2S X;  3JCU O;  1S5L O;  1YS5 A;  3HOL A;  1MPF A;  1ZHT A;  2KDY A;  4LSH A;  4N74 A;  4O4U A;  4N75 A;  3WU2 O;  8PRN A;  3QRC A;  5EE2 A;  6PRN A;  2XE1 A;  2XTR A;  3GP6 A;  4K3B A;  4BUM X;  4FT6 A;  3DA3 A;  2KC0 A;  3LK3 B;  2MNH A;  4GCS A;  4UB8 O;  1BH3 A;  1THQ A;  3LK3 A;  2JMM A;  4D64 A;  5H2F O;  3AA0 A;  3LK4 1;  5GTH O;  5ADX K;  3BRZ A;  3POQ A;  2XE3 A;  4AUI A;  3JTY A;  4GF4 A;  4XNL A;  2AXT O;  1QJP A;  4N58 A;  3BS0 A;  2Y0K A;  4K3C A;  1T1L A;  2W80 C;  1ZHX A;  5D5D A;  5G26 A;  4AKM A;  4Z3T A;  2IWW A;  3PGS A;  3RBH A;  3SY9 A;  4E1S A;  2R4P A;  3AA1 B;  1HXX A;  2LFU A;  3SZD A;  3VZU X;  2XE2 A;  3AA1 A;  2W81 C;  3LK4 2;  2F1C X;  2R4L A;  5JDP A;  4AYI D;  1IZN B;  2Y2X A;  4KR4 A;  3QRA A;  5G3A A;  2R4O A;  1IZN A;  2LHF A;  1E54 A;  2O4V A;  4O3Z A;  1P4T A;  2KXP B;  2POR A;  3AA7 B;  3LK2 B;  2N2L A;  2X27 X;  2M07 A;  3V8U A;  1Q9G A;  4D65 A;  4O3W A;  3NJT A;  2KXP A;  3AA7 A;  3LK2 A;  4PJ0 O;  3EMN X;  4C69 X;  3T0S A;  4C4V B;  4AYE C;  2PRN A;  2WJR A;  3VY8 X;  2XG6 A;  4FRX A;  4JCH A;  3DZM A;  3HOE A;  4C4V A;  4RJX A;  4LSI A;  2R88 A;  2F1V A;  3PF1 A;  3WI4 A;  3DWN A;  5G39 A; 
#chains in the Genus database with same CATH homology
 5E79 O;  2AXT O;  3KZI O;  5TIS O;  4IL6 O;  5KAI O;  5KAF O;  5B5E O;  3JCU O;  1S5L O;  3A0H O;  5B66 O;  3WU2 O;  5G3A A;  5GTI O;  5G38 A;  4UB8 O;  4PJ0 O;  5H2F O;  5GTH O;  4UB6 O;  3A0B O;  5G39 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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