5G4HA

1.50 a resolution catechol (1,2-dihydroxybenzene) inhibited sporosarcina pasteurii urease
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
99
structure length
99
Chain Sequence
HLNPAEKEKLQIFLASELALKRKARGLKLNYPEAVAIITSFIMEGARDGKTVAMLMEEGKHVLTRDDVMEGVPEMIDDIQAEATFPDGTKLVTVHNPIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UREASE SUBUNIT GAMMA
publication title Inactivation of Urease by Catechol: Kinetics and Structure.
pubmed doi rcsb
total genus 29
structure length 99
sequence length 99
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2016-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 5g4hA00
1EJRA 3QGKA 2UBPA 2FVHA 3LA4A 4FURA 1E9ZA 4CEUA 1EJVA 1UBPA 4UBPA 1FWFA 5FSDA 1A5MA 3UBPA 1FWAA 4AC7A 1EJUA 4H9MA 2KAUA 4GY7A 5A6TA 1IE7A 1A5LA 1E9YA 1FWCA 1KRBA 4EPBA 4G7EA 4EPDA 4EP8A 1KRAA 1A5KA 1EJSA 1EF2C 4GOAA 1A5OA 5FSEA 1FWGA 1EJTA 5G4HA 4G7EB 1A5NA 1FWDA 1FWJA 4CEXA 1FWIA 1KRCA 4Z42A 1FWHA 1S3TA 1FWBA 3QGAA 4EPEA 1EJXA 1FWEA 1EJWA
chains in the Genus database with same CATH superfamily
1EJRA 3QGKA 2UBPA 2FVHA 3LA4A 4FURA 1E9ZA 4CEUA 1EJVA 1UBPA 4UBPA 1FWFA 5FSDA 1A5MA 3UBPA 1FWAA 4AC7A 1EJUA 4H9MA 2KAUA 4GY7A 5A6TA 1IE7A 1A5LA 1E9YA 1FWCA 1KRBA 4EPBA 4G7EA 4EPDA 4EP8A 1KRAA 1A5KA 1EJSA 1EF2C 4GOAA 1A5OA 5FSEA 1FWGA 1EJTA 5G4HA 4G7EB 1A5NA 1FWDA 1FWJA 4CEXA 1FWIA 1KRCA 4Z42A 1FWHA 1S3TA 1FWBA 3QGAA 4EPEA 1EJXA 1FWEA 1EJWA
chains in the Genus database with same CATH topology
1EJRA 3QGKA 2UBPA 2FVHA 3LA4A 4FURA 1E9ZA 4CEUA 1EJVA 1UBPA 4UBPA 1FWFA 5FSDA 1A5MA 3UBPA 1FWAA 4AC7A 1EJUA 4H9MA 2KAUA 4GY7A 5A6TA 1IE7A 1A5LA 1E9YA 1FWCA 1KRBA 4EPBA 4G7EA 4EPDA 4EP8A 1KRAA 1A5KA 1EJSA 1EF2C 4GOAA 1A5OA 5FSEA 1FWGA 1EJTA 5G4HA 4G7EB 1A5NA 1FWDA 1FWJA 4CEXA 1FWIA 1KRCA 4Z42A 1FWHA 1S3TA 1FWBA 3QGAA 4EPEA 1EJXA 1FWEA 1EJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EJR A;  3QGK A;  2UBP A;  2FVH A;  3LA4 A;  4FUR A;  1E9Z A;  4CEU A;  1EJV A;  1UBP A;  4UBP A;  1FWF A;  5FSD A;  1A5M A;  3UBP A;  1FWA A;  4AC7 A;  1EJU A;  4H9M A;  2KAU A;  4GY7 A;  5A6T A;  1IE7 A;  1A5L A;  1E9Y A;  1FWC A;  1KRB A;  4EPB A;  4G7E A;  4EPD A;  4EP8 A;  1KRA A;  1A5K A;  1EJS A;  1EF2 C;  4GOA A;  1A5O A;  5FSE A;  1FWG A;  1EJT A;  5G4H A;  4G7E B;  1A5N A;  1FWD A;  1FWJ A;  4CEX A;  1FWI A;  1KRC A;  4Z42 A;  1FWH A;  1S3T A;  1FWB A;  3QGA A;  4EPE A;  1EJX A;  1FWE A;  1EJW A; 
#chains in the Genus database with same CATH topology
 1EJR A;  3QGK A;  2UBP A;  2FVH A;  3LA4 A;  4FUR A;  1E9Z A;  4CEU A;  1EJV A;  1UBP A;  4UBP A;  1FWF A;  5FSD A;  1A5M A;  3UBP A;  1FWA A;  4AC7 A;  1EJU A;  4H9M A;  2KAU A;  4GY7 A;  5A6T A;  1IE7 A;  1A5L A;  1E9Y A;  1FWC A;  1KRB A;  4EPB A;  4G7E A;  4EPD A;  4EP8 A;  1KRA A;  1A5K A;  1EJS A;  1EF2 C;  4GOA A;  1A5O A;  5FSE A;  1FWG A;  1EJT A;  5G4H A;  4G7E B;  1A5N A;  1FWD A;  1FWJ A;  4CEX A;  1FWI A;  1KRC A;  4Z42 A;  1FWH A;  1S3T A;  1FWB A;  3QGA A;  4EPE A;  1EJX A;  1FWE A;  1EJW A; 
#chains in the Genus database with same CATH homology
 1EJR A;  3QGK A;  2UBP A;  2FVH A;  3LA4 A;  4FUR A;  1E9Z A;  4CEU A;  1EJV A;  1UBP A;  4UBP A;  1FWF A;  5FSD A;  1A5M A;  3UBP A;  1FWA A;  4AC7 A;  1EJU A;  4H9M A;  2KAU A;  4GY7 A;  5A6T A;  1IE7 A;  1A5L A;  1E9Y A;  1FWC A;  1KRB A;  4EPB A;  4G7E A;  4EPD A;  4EP8 A;  1KRA A;  1A5K A;  1EJS A;  1EF2 C;  4GOA A;  1A5O A;  5FSE A;  1FWG A;  1EJT A;  5G4H A;  4G7E B;  1A5N A;  1FWD A;  1FWJ A;  4CEX A;  1FWI A;  1KRC A;  4Z42 A;  1FWH A;  1S3T A;  1FWB A;  3QGA A;  4EPE A;  1EJX A;  1FWE A;  1EJW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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