5GADT

Rnc-srp-sr complex early state
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
110
structure length
110
Chain Sequence
METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords ESRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 27
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2015-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
T PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 5gadT00
2OTLR 3CCJR 3CF5P 3CC7R 1YIJR 4IOCP 1S72R 4V19W 4WCEP 4WFAP 3G4SR 1QVGQ 1K73S 1NJIS 3CMAR 1QVFQ 1Q82S 1VQ8R 2OTJR 1YI2R 1VQ7R 1YJWR 3J7ZS 3CCVR 3I55R 2QA4R 5JVGP 5DM7P 4WFNP 3OW2Q 5GADT 1Q7YS 1KC8S 3G6ER 3CC2R 1VQOR 1VQ5R 1YJNR 5MLCU 3G71R 1Q81S 4WF9P 1VQ9R 3J7YT 1YITR 1N8RS 1VQ4R 3CD6R 1YJ9R 1M90S 1K8AS 2ZJRP 5GAET 1VQ6R 5JVHP 1VQMR 3CCUR 4U67P 1BXEA 4UY8S 1KQSQ 3CCSR 1KD1S 3PIOP 3CCQR 5GAHT 5DM6P 3DLLP 5H1SU 3I56R 3CCRR 3CPWQ 4IO9P 1I4JA 1JJ2Q 2ZJQP 1VQLR 5GAGT 1M1KS 4WFBP 5HL7P 1VQPR 4IOAP 3CXCQ 2ZJPP 3CCER 1YHQR 1VQNR 1K9MS 3CCLR 1W2BQ 3CCMR 3CMER 2QEXR 1Q86S 3PIPP 1VQKR 3CC4R
chains in the Genus database with same CATH superfamily
2OTLR 3CCJR 3CF5P 3CC7R 1YIJR 2BDDA 3NE1A 4IOCP 1S72R 4V19W 4WCEP 4WFAP 2BYDA 3G4SR 1QVGQ 1K73S 1FTFA 1NJIS 2D0PA 3CMAR 1QVFQ 1F7TA 4MRTA 1Q82S 1VQ8R 2OTJR 2JBZA 1YI2R 1VQ7R 1YJWR 3J7ZS 3CCVR 3I55R 2QA4R 5JVGP 3GWMA 5DM7P 2WATA 4WFNP 3OW2Q 5GADT 4HC6A 1FTEA 1Q7YS 1KC8S 3G6ER 3CC2R 1VQOR 1VQ5R 2WDYA 1YJNR 5MLCU 3G71R 3NFDA 4WF9P 1Q81S 1VQ9R 5CXDA 1YITR 1N8RS 1VQ4R 3CD6R 1YJ9R 5CMOA 1M90S 1K8AS 2ZJRP 2WDSA 2QG8A 5GAET 3HQJA 1VQ6R 5JVHP 1VQMR 3H7QA 3CCUR 2WDOA 4U67P 1BXEA 4UY8S 3CCSR 1KQSQ 1KD1S 3PIOP 3CCQR 5DM6P 5GAHT 2D0OA 3DLLP 2WASB 1FTHA 2CG5A 5H1SU 3I56R 1F7LA 1NBWA 3CCRR 3CPWQ 4IO9P 4DXEA 1I4JA 1JJ2Q 2ZJQP 1VQLR 5GAGT 1M1KS 4WFBP 3QMNA 5HL7P 1VQPR 4IOAP 3CXCQ 2ZJPP 3CCER 1YHQR 2JCAA 1VQNR 1K9MS 3CCLR 1W2BQ 3NE9A 3NE3B 2C43A 4JM7A 3CCMR 3HYKA 1QR0A 1F80A 3CMER 2QEXR 3CC4R 2WASA 1Q86S 3PIPP 1VQKR 3J7YT
chains in the Genus database with same CATH topology
2OTLR 3CCJR 3CF5P 3CC7R 1YIJR 4IOCP 1S72R 4V19W 4WCEP 4WFAP 3G4SR 1QVGQ 1K73S 1NJIS 3CMAR 1QVFQ 1Q82S 1VQ8R 2OTJR 1YI2R 1VQ7R 1YJWR 3J7ZS 3CCVR 3I55R 2QA4R 5JVGP 5DM7P 4WFNP 3OW2Q 5GADT 1Q7YS 1KC8S 3G6ER 3CC2R 1VQOR 1VQ5R 1YJNR 5MLCU 3G71R 1Q81S 4WF9P 1VQ9R 3J7YT 1YITR 1N8RS 1VQ4R 3CD6R 1YJ9R 1M90S 1K8AS 2ZJRP 5GAET 1VQ6R 5JVHP 1VQMR 3CCUR 4U67P 1BXEA 4UY8S 1KQSQ 3CCSR 1KD1S 3PIOP 3CCQR 5GAHT 5DM6P 3DLLP 5H1SU 3I56R 3CCRR 3CPWQ 4IO9P 1I4JA 1JJ2Q 2ZJQP 1VQLR 5GAGT 1M1KS 4WFBP 5HL7P 1VQPR 4IOAP 3CXCQ 2ZJPP 3CCER 1YHQR 1VQNR 1K9MS 3CCLR 1W2BQ 3CCMR 3CMER 2QEXR 1Q86S 3PIPP 1VQKR 3CC4R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OTL R;  3CCJ R;  3CF5 P;  3CC7 R;  1YIJ R;  4IOC P;  1S72 R;  4V19 W;  4WCE P;  4WFA P;  3G4S R;  1QVG Q;  1K73 S;  1NJI S;  3CMA R;  1QVF Q;  1Q82 S;  1VQ8 R;  2OTJ R;  1YI2 R;  1VQ7 R;  1YJW R;  3J7Z S;  3CCV R;  3I55 R;  2QA4 R;  5JVG P;  5DM7 P;  4WFN P;  3OW2 Q;  5GAD T;  1Q7Y S;  1KC8 S;  3G6E R;  3CC2 R;  1VQO R;  1VQ5 R;  1YJN R;  5MLC U;  3G71 R;  1Q81 S;  4WF9 P;  1VQ9 R;  3J7Y T;  1YIT R;  1N8R S;  1VQ4 R;  3CD6 R;  1YJ9 R;  1M90 S;  1K8A S;  2ZJR P;  5GAE T;  1VQ6 R;  5JVH P;  1VQM R;  3CCU R;  4U67 P;  1BXE A;  4UY8 S;  1KQS Q;  3CCS R;  1KD1 S;  3PIO P;  3CCQ R;  5GAH T;  5DM6 P;  3DLL P;  5H1S U;  3I56 R;  3CCR R;  3CPW Q;  4IO9 P;  1I4J A;  1JJ2 Q;  2ZJQ P;  1VQL R;  5GAG T;  1M1K S;  4WFB P;  5HL7 P;  1VQP R;  4IOA P;  3CXC Q;  2ZJP P;  3CCE R;  1YHQ R;  1VQN R;  1K9M S;  3CCL R;  1W2B Q;  3CCM R;  3CME R;  2QEX R;  1Q86 S;  3PIP P;  1VQK R;  3CC4 R; 
#chains in the Genus database with same CATH topology
 2OTL R;  3CCJ R;  3CF5 P;  3CC7 R;  1YIJ R;  2BDD A;  3NE1 A;  4IOC P;  1S72 R;  4V19 W;  4WCE P;  4WFA P;  2BYD A;  3G4S R;  1QVG Q;  1K73 S;  1FTF A;  1NJI S;  2D0P A;  3CMA R;  1QVF Q;  1F7T A;  4MRT A;  1Q82 S;  1VQ8 R;  2OTJ R;  2JBZ A;  1YI2 R;  1VQ7 R;  1YJW R;  3J7Z S;  3CCV R;  3I55 R;  2QA4 R;  5JVG P;  3GWM A;  5DM7 P;  2WAT A;  4WFN P;  3OW2 Q;  5GAD T;  4HC6 A;  1FTE A;  1Q7Y S;  1KC8 S;  3G6E R;  3CC2 R;  1VQO R;  1VQ5 R;  2WDY A;  1YJN R;  5MLC U;  3G71 R;  3NFD A;  4WF9 P;  1Q81 S;  1VQ9 R;  5CXD A;  1YIT R;  1N8R S;  1VQ4 R;  3CD6 R;  1YJ9 R;  5CMO A;  1M90 S;  1K8A S;  2ZJR P;  2WDS A;  2QG8 A;  5GAE T;  3HQJ A;  1VQ6 R;  5JVH P;  1VQM R;  3H7Q A;  3CCU R;  2WDO A;  4U67 P;  1BXE A;  4UY8 S;  3CCS R;  1KQS Q;  1KD1 S;  3PIO P;  3CCQ R;  5DM6 P;  5GAH T;  2D0O A;  3DLL P;  2WAS B;  1FTH A;  2CG5 A;  5H1S U;  3I56 R;  1F7L A;  1NBW A;  3CCR R;  3CPW Q;  4IO9 P;  4DXE A;  1I4J A;  1JJ2 Q;  2ZJQ P;  1VQL R;  5GAG T;  1M1K S;  4WFB P;  3QMN A;  5HL7 P;  1VQP R;  4IOA P;  3CXC Q;  2ZJP P;  3CCE R;  1YHQ R;  2JCA A;  1VQN R;  1K9M S;  3CCL R;  1W2B Q;  3NE9 A;  3NE3 B;  2C43 A;  4JM7 A;  3CCM R;  3HYK A;  1QR0 A;  1F80 A;  3CME R;  2QEX R;  3CC4 R;  2WAS A;  1Q86 S;  3PIP P;  1VQK R;  3J7Y T; 
#chains in the Genus database with same CATH homology
 2OTL R;  3CCJ R;  3CF5 P;  3CC7 R;  1YIJ R;  4IOC P;  1S72 R;  4V19 W;  4WCE P;  4WFA P;  3G4S R;  1QVG Q;  1K73 S;  1NJI S;  3CMA R;  1QVF Q;  1Q82 S;  1VQ8 R;  2OTJ R;  1YI2 R;  1VQ7 R;  1YJW R;  3J7Z S;  3CCV R;  3I55 R;  2QA4 R;  5JVG P;  5DM7 P;  4WFN P;  3OW2 Q;  5GAD T;  1Q7Y S;  1KC8 S;  3G6E R;  3CC2 R;  1VQO R;  1VQ5 R;  1YJN R;  5MLC U;  3G71 R;  1Q81 S;  4WF9 P;  1VQ9 R;  3J7Y T;  1YIT R;  1N8R S;  1VQ4 R;  3CD6 R;  1YJ9 R;  1M90 S;  1K8A S;  2ZJR P;  5GAE T;  1VQ6 R;  5JVH P;  1VQM R;  3CCU R;  4U67 P;  1BXE A;  4UY8 S;  1KQS Q;  3CCS R;  1KD1 S;  3PIO P;  3CCQ R;  5GAH T;  5DM6 P;  3DLL P;  5H1S U;  3I56 R;  3CCR R;  3CPW Q;  4IO9 P;  1I4J A;  1JJ2 Q;  2ZJQ P;  1VQL R;  5GAG T;  1M1K S;  4WFB P;  5HL7 P;  1VQP R;  4IOA P;  3CXC Q;  2ZJP P;  3CCE R;  1YHQ R;  1VQN R;  1K9M S;  3CCL R;  1W2B Q;  3CCM R;  3CME R;  2QEX R;  1Q86 S;  3PIP P;  1VQK R;  3CC4 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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