5GADc

Rnc-srp-sr complex early state
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
51
structure length
51
Chain Sequence
GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ESRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 6
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2015-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
c PF00471 Ribosomal_L33 Ribosomal protein L33
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.120 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 5gadc00
3PIO1 5H1Sc 3PIP1 5JVH1 5GAEc 5GAHc 4U671 4UY81 3J7Y1 5JVG1 5DM71 3J7Z1 4V196 5MLC3 5DM61 5GAGc 4WFN1 5GADc
chains in the Genus database with same CATH superfamily
3H9CA 4ME3A 2V0EA 1ODHA 5IYDL 2NVTL 3QQCE 2RDVA 1PZXA 1RYTA 5DM61 1JYBA 2BE5D 4XGHA 2DSXA 1WJVA 4UY81 2ERSA 2WAQP 4WFN1 1R0FA 2LCQA 2NVXL 1R9TL 3HOVL 3HOZL 4GS7D 1QCVA 1B13A 3QVDA 4POFA 2CR8A 3M3YL 1H7VA 3GTML 3B08B 1VZIA 1WCML 4A3ML 1RDVA 5MFPA 3IU3I 3LPEB 3J7Z1 3LWRB 3NFPI 1BQ9A 4AHYA 8RXNA 3WWNB 4V196 1TWHL 3A44A 1SMMA 2V3BB 3KYUA 3GTOL 3I4ML 1IU6A 5AI3A 2JA7L 1T9OA 3HKZP 2K2DA 2V0FA 4JAGA 1NXEA 4BY1L 5GAGc 3S1NL 2R92L 2B5ID 3H97A 1Y1WL 3RZOL 5FLML 2C6AA 3PWFA 1BFYA 2XJUA 3S1QL 4Y52L 4U671 3S14L 3LNLA 3JR7A 1LKMA 1RDGA 1TWGL 1ZRPA 4A3IL 3PZAA 1S2ZA 2WB1P 4YWMA 1BE7A 2C6BA 1E8JA 2JI1A 4AR3A 2AUSB 1YUXA 2KKDA 4AI1A 3P8BA 4ZN3B 4C3HL 2E2JL 2JI2A 3RZ6A 5GAHc 2VL6A 1LKOA 1B71A 4C3JL 1QQTA 3FKIL 2A6HD 1LKPA 4A3GL 4ZN1B 2HVYC 2PMZP 1I50L 3S16L 1I3QL 2J9UB 2M4VA 1I6HL 7RXNA 3GTGL 4AR5A 5JVH1 5M5XL 3KYVA 1R0IA 1S24A 2EY4E 4E6YA 3M4OL 1DVBA 3WWLA 1F4LA 4AI0A 4B8CD 4LHNA 4A3EL 3MSUA 4AI2A 4RXNA 2XJVA 3GTJL 2HR5A 4TPUA 3S1RL 2PVEA 5AN9H 3CQZL 3PL5A 1S30A 1PFUA 5FJ8L 3LWPB 1SMWA 2A68D 3S1ML 4A3FL 3PIP1 3HJYB 3S17L 3K35A 4A93L 2NYDA 1SFOL 5RXNA 2XJSA 4G6BA 2CKAA 4A3DL 2NVQL 2VUML 1R0GA 3GTQL 4A3CL 1NXGA 2APOB 4AHWA 4AR6A 5JVG1 1T9PA 3PO3L 4BBSL 3P2AA 2MS3A 2XJQA 5EIOC 5IP7L 1T9QA 2XJPA 2JA5L 1R0JA 3LWVB 3B0AB 2Z3RB 2Y0SP 2E2HL 1OWBA 2AYJA 3MPSA 5IYCL 3HOUL 3S2DL 3LWQB 1TWCL 2GMGA 3KYXA 3PO2L 2R93L 2Z3QB 1RB9A 4XXBB 2O5JD 3PKIA 3GTKL 3MQKB 5DM71 3H99A 4BY7L 3GTLL 2YU9L 2XJRA 3H0GL 3J7Y1 2PYAA 4A3LL 5GADc 4AR4A 1PFWA 5H1Sc 5M5WL 5C3EL 2KN9A 5M3ML 3RYGA 3PIO1 1VZGA 4A3BL 2RFKB 2H12A 3SS2A 1IW7D 2XJTA 1VCXA 1VZHA 2E2IL 4BXXL 5EINC 3S15L 4YWLA 3LWOB 1YK5A 1PFVA 4LHLA 5GAEc 2M6OA 1FHMA 1PFYA 1LTLA 3FDJA 1YUZA 4JADA 2ZIXA 1TWAL 4AYBP 3KYYA 4C2M1 4AHXA 5C4XL 3HOYL 3I4NL 1TWFL 2PPTA 2M4YA 3RZTA 1QYBA 1DX8A 1Z92B 5MLC3 1YV1A 1B2JA 3HOXL 2M6PA 3HJWB 4C3IL 3S2HL 3KYWA 1RWDA 2PVXA 3GTPL 3H9BA 1K83L 2CKCA 2JA6L 1OWCA 3K7AL 2AQCA 1YK4A 1CADA 4AHZA 4TVMA 5IP9L 1SMUA 2JA8L 5K2ME 1NNQA 4JAFA 5M3FL 5IY0A 2NVYL 3ZG6A 5MF6A 2PSMC 5MFZA 3PKJA 3H3VM 1C09A 2QL0A 4QIWP 5AI2A 3RZDL 1CAAA 4K9FA 1R0HA 4X6AL 2L0ZA 5C4JL 2ERJA 4A3KL 1IROA 2JI3A 2A69D 3HAXC 1FHHA 1RYQA 4Y7NL 2B63L 3HOWL 1BQ8A 4BBRL 4AI3A 1IRNA 1B2OA 5IYBL 4POGA 3VPBE 1IU5A 2A6ED 6RXNA 1BRFA 5M5YL 4JAEA 2R7ZL 5C44L 4A3JL 5MGNA 1Y1VL 1P7PA
chains in the Genus database with same CATH topology
2M6PA 2JI2A 4ME3A 1T9QA 2V0EA 3RZ6A 2XJPA 2VL6A 5GAHc 1ODHA 1LKOA 1B71A 2A6HD 3QQCE 1LKPA 2RDVA 1R0JA 3KYWA 4ZN1B 1RWDA 2PVXA 1RYTA 3B0AB 2Z3RB 5DM61 1JYBA 2BE5D 4XGHA 2DSXA 1WJVA 2J9UB 2M4VA 2ERSA 4UY81 2CKCA 1OWBA 7RXNA 1OWCA 4WFN1 2AYJA 3MPSA 4AR5A 5JVH1 3KYVA 1R0IA 1S24A 1R0FA 2LCQA 2GMGA 4E6YA 3KYXA 4GS7D 1DVBA 1YK4A 2Z3QB 1RB9A 1CADA 1QCVA 1B13A 4XXBB 3QVDA 3WWLA 2O5JD 3PKIA 4AHZA 5DM71 4TVMA 2CR8A 4POFA 4AI0A 1SMUA 1H7VA 4B8CD 2XJRA 4LHNA 3B08B 5K2ME 1NNQA 1VZIA 4JAFA 3MSUA 4AI2A 1RDVA 4RXNA 5IY0A 2XJVA 3ZG6A 5MFPA 3IU3I 2HR5A 3LPEB 5MF6A 3J7Y1 2PSMC 5MFZA 3PKJA 4TPUA 1C09A 2PYAA 3J7Z1 5GADc 2PVEA 2QL0A 4AR4A 5H1Sc 3NFPI 5AN9H 1BQ9A 4AHYA 8RXNA 2KN9A 3WWNB 4V196 3A44A 1S30A 3RYGA 1SMMA 1VZGA 2V3BB 5AI2A 3PIO1 1SMWA 3KYUA 1IU6A 1CAAA 4K9FA 2A68D 2H12A 3SS2A 1IW7D 2XJTA 5AI3A 1R0HA 3PIP1 1VCXA 1VZHA 2L0ZA 1T9OA 3K35A 2ERJA 5EINC 2NYDA 5RXNA 1IROA 4YWLA 1YK5A 2K2DA 2V0FA 4JAGA 1NXEA 2JI3A 2A69D 5GAGc 2XJSA 1FHHA 1RYQA 4G6BA 4LHLA 5GAEc 2M6OA 2B5ID 1FHMA 2CKAA 1LTLA 1BQ8A 1YUZA 4JADA 2C6AA 2ZIXA 1R0GA 4AI3A 1IRNA 3PWFA 2XJUA 3KYYA 1BFYA 1B2OA 4AHXA 4U671 4POGA 3LNLA 3VPBE 1IU5A 2A6ED 1LKMA 1NXGA 1RDGA 6RXNA 4AHWA 4AR6A 1ZRPA 2PPTA 2M4YA 3PZAA 1QYBA 3RZTA 1T9PA 5JVG1 1DX8A 1S2ZA 1Z92B 4YWMA 1BE7A 2C6BA 5MLC3 1BRFA 1E8JA 2JI1A 1YV1A 3P2AA 4AR3A 4JAEA 1YUXA 1B2JA 2KKDA 4AI1A 2MS3A 3P8BA 5MGNA 2XJQA 5EIOC 4ZN3B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PIO 1;  5H1S c;  3PIP 1;  5JVH 1;  5GAE c;  5GAH c;  4U67 1;  4UY8 1;  3J7Y 1;  5JVG 1;  5DM7 1;  3J7Z 1;  4V19 6;  5MLC 3;  5DM6 1;  5GAG c;  4WFN 1;  5GAD c; 
#chains in the Genus database with same CATH topology
 3H9C A;  4ME3 A;  2V0E A;  1ODH A;  5IYD L;  2NVT L;  3QQC E;  2RDV A;  1PZX A;  1RYT A;  5DM6 1;  1JYB A;  2BE5 D;  4XGH A;  2DSX A;  1WJV A;  4UY8 1;  2ERS A;  2WAQ P;  4WFN 1;  1R0F A;  2LCQ A;  2NVX L;  1R9T L;  3HOV L;  3HOZ L;  4GS7 D;  1QCV A;  1B13 A;  3QVD A;  4POF A;  2CR8 A;  3M3Y L;  1H7V A;  3GTM L;  3B08 B;  1VZI A;  1WCM L;  4A3M L;  1RDV A;  5MFP A;  3IU3 I;  3LPE B;  3J7Z 1;  3LWR B;  3NFP I;  1BQ9 A;  4AHY A;  8RXN A;  3WWN B;  4V19 6;  1TWH L;  3A44 A;  1SMM A;  2V3B B;  3KYU A;  3GTO L;  3I4M L;  1IU6 A;  5AI3 A;  2JA7 L;  1T9O A;  3HKZ P;  2K2D A;  2V0F A;  4JAG A;  1NXE A;  4BY1 L;  5GAG c;  3S1N L;  2R92 L;  2B5I D;  3H97 A;  1Y1W L;  3RZO L;  5FLM L;  2C6A A;  3PWF A;  1BFY A;  2XJU A;  3S1Q L;  4Y52 L;  4U67 1;  3S14 L;  3LNL A;  3JR7 A;  1LKM A;  1RDG A;  1TWG L;  1ZRP A;  4A3I L;  3PZA A;  1S2Z A;  2WB1 P;  4YWM A;  1BE7 A;  2C6B A;  1E8J A;  2JI1 A;  4AR3 A;  2AUS B;  1YUX A;  2KKD A;  4AI1 A;  3P8B A;  4ZN3 B;  4C3H L;  2E2J L;  2JI2 A;  3RZ6 A;  5GAH c;  2VL6 A;  1LKO A;  1B71 A;  4C3J L;  1QQT A;  3FKI L;  2A6H D;  1LKP A;  4A3G L;  4ZN1 B;  2HVY C;  2PMZ P;  1I50 L;  3S16 L;  1I3Q L;  2J9U B;  2M4V A;  1I6H L;  7RXN A;  3GTG L;  4AR5 A;  5JVH 1;  5M5X L;  3KYV A;  1R0I A;  1S24 A;  2EY4 E;  4E6Y A;  3M4O L;  1DVB A;  3WWL A;  1F4L A;  4AI0 A;  4B8C D;  4LHN A;  4A3E L;  3MSU A;  4AI2 A;  4RXN A;  2XJV A;  3GTJ L;  2HR5 A;  4TPU A;  3S1R L;  2PVE A;  5AN9 H;  3CQZ L;  3PL5 A;  1S30 A;  1PFU A;  5FJ8 L;  3LWP B;  1SMW A;  2A68 D;  3S1M L;  4A3F L;  3PIP 1;  3HJY B;  3S17 L;  3K35 A;  4A93 L;  2NYD A;  1SFO L;  5RXN A;  2XJS A;  4G6B A;  2CKA A;  4A3D L;  2NVQ L;  2VUM L;  1R0G A;  3GTQ L;  4A3C L;  1NXG A;  2APO B;  4AHW A;  4AR6 A;  5JVG 1;  1T9P A;  3PO3 L;  4BBS L;  3P2A A;  2MS3 A;  2XJQ A;  5EIO C;  5IP7 L;  1T9Q A;  2XJP A;  2JA5 L;  1R0J A;  3LWV B;  3B0A B;  2Z3R B;  2Y0S P;  2E2H L;  1OWB A;  2AYJ A;  3MPS A;  5IYC L;  3HOU L;  3S2D L;  3LWQ B;  1TWC L;  2GMG A;  3KYX A;  3PO2 L;  2R93 L;  2Z3Q B;  1RB9 A;  4XXB B;  2O5J D;  3PKI A;  3GTK L;  3MQK B;  5DM7 1;  3H99 A;  4BY7 L;  3GTL L;  2YU9 L;  2XJR A;  3H0G L;  3J7Y 1;  2PYA A;  4A3L L;  5GAD c;  4AR4 A;  1PFW A;  5H1S c;  5M5W L;  5C3E L;  2KN9 A;  5M3M L;  3RYG A;  3PIO 1;  1VZG A;  4A3B L;  2RFK B;  2H12 A;  3SS2 A;  1IW7 D;  2XJT A;  1VCX A;  1VZH A;  2E2I L;  4BXX L;  5EIN C;  3S15 L;  4YWL A;  3LWO B;  1YK5 A;  1PFV A;  4LHL A;  5GAE c;  2M6O A;  1FHM A;  1PFY A;  1LTL A;  3FDJ A;  1YUZ A;  4JAD A;  2ZIX A;  1TWA L;  4AYB P;  3KYY A;  4C2M 1;  4AHX A;  5C4X L;  3HOY L;  3I4N L;  1TWF L;  2PPT A;  2M4Y A;  3RZT A;  1QYB A;  1DX8 A;  1Z92 B;  5MLC 3;  1YV1 A;  1B2J A;  3HOX L;  2M6P A;  3HJW B;  4C3I L;  3S2H L;  3KYW A;  1RWD A;  2PVX A;  3GTP L;  3H9B A;  1K83 L;  2CKC A;  2JA6 L;  1OWC A;  3K7A L;  2AQC A;  1YK4 A;  1CAD A;  4AHZ A;  4TVM A;  5IP9 L;  1SMU A;  2JA8 L;  5K2M E;  1NNQ A;  4JAF A;  5M3F L;  5IY0 A;  2NVY L;  3ZG6 A;  5MF6 A;  2PSM C;  5MFZ A;  3PKJ A;  3H3V M;  1C09 A;  2QL0 A;  4QIW P;  5AI2 A;  3RZD L;  1CAA A;  4K9F A;  1R0H A;  4X6A L;  2L0Z A;  5C4J L;  2ERJ A;  4A3K L;  1IRO A;  2JI3 A;  2A69 D;  3HAX C;  1FHH A;  1RYQ A;  4Y7N L;  2B63 L;  3HOW L;  1BQ8 A;  4BBR L;  4AI3 A;  1IRN A;  1B2O A;  5IYB L;  4POG A;  3VPB E;  1IU5 A;  2A6E D;  6RXN A;  1BRF A;  5M5Y L;  4JAE A;  2R7Z L;  5C44 L;  4A3J L;  5MGN A;  1Y1V L;  1P7P A; 
#chains in the Genus database with same CATH homology
 2M6P A;  2JI2 A;  4ME3 A;  1T9Q A;  2V0E A;  3RZ6 A;  2XJP A;  2VL6 A;  5GAH c;  1ODH A;  1LKO A;  1B71 A;  2A6H D;  3QQC E;  1LKP A;  2RDV A;  1R0J A;  3KYW A;  4ZN1 B;  1RWD A;  2PVX A;  1RYT A;  3B0A B;  2Z3R B;  5DM6 1;  1JYB A;  2BE5 D;  4XGH A;  2DSX A;  1WJV A;  2J9U B;  2M4V A;  2ERS A;  4UY8 1;  2CKC A;  1OWB A;  7RXN A;  1OWC A;  4WFN 1;  2AYJ A;  3MPS A;  4AR5 A;  5JVH 1;  3KYV A;  1R0I A;  1S24 A;  1R0F A;  2LCQ A;  2GMG A;  4E6Y A;  3KYX A;  4GS7 D;  1DVB A;  1YK4 A;  2Z3Q B;  1RB9 A;  1CAD A;  1QCV A;  1B13 A;  4XXB B;  3QVD A;  3WWL A;  2O5J D;  3PKI A;  4AHZ A;  5DM7 1;  4TVM A;  2CR8 A;  4POF A;  4AI0 A;  1SMU A;  1H7V A;  4B8C D;  2XJR A;  4LHN A;  3B08 B;  5K2M E;  1NNQ A;  1VZI A;  4JAF A;  3MSU A;  4AI2 A;  1RDV A;  4RXN A;  5IY0 A;  2XJV A;  3ZG6 A;  5MFP A;  3IU3 I;  2HR5 A;  3LPE B;  5MF6 A;  3J7Y 1;  2PSM C;  5MFZ A;  3PKJ A;  4TPU A;  1C09 A;  2PYA A;  3J7Z 1;  5GAD c;  2PVE A;  2QL0 A;  4AR4 A;  5H1S c;  3NFP I;  5AN9 H;  1BQ9 A;  4AHY A;  8RXN A;  2KN9 A;  3WWN B;  4V19 6;  3A44 A;  1S30 A;  3RYG A;  1SMM A;  1VZG A;  2V3B B;  5AI2 A;  3PIO 1;  1SMW A;  3KYU A;  1IU6 A;  1CAA A;  4K9F A;  2A68 D;  2H12 A;  3SS2 A;  1IW7 D;  2XJT A;  5AI3 A;  1R0H A;  3PIP 1;  1VCX A;  1VZH A;  2L0Z A;  1T9O A;  3K35 A;  2ERJ A;  5EIN C;  2NYD A;  5RXN A;  1IRO A;  4YWL A;  1YK5 A;  2K2D A;  2V0F A;  4JAG A;  1NXE A;  2JI3 A;  2A69 D;  5GAG c;  2XJS A;  1FHH A;  1RYQ A;  4G6B A;  4LHL A;  5GAE c;  2M6O A;  2B5I D;  1FHM A;  2CKA A;  1LTL A;  1BQ8 A;  1YUZ A;  4JAD A;  2C6A A;  2ZIX A;  1R0G A;  4AI3 A;  1IRN A;  3PWF A;  2XJU A;  3KYY A;  1BFY A;  1B2O A;  4AHX A;  4U67 1;  4POG A;  3LNL A;  3VPB E;  1IU5 A;  2A6E D;  1LKM A;  1NXG A;  1RDG A;  6RXN A;  4AHW A;  4AR6 A;  1ZRP A;  2PPT A;  2M4Y A;  3PZA A;  1QYB A;  3RZT A;  1T9P A;  5JVG 1;  1DX8 A;  1S2Z A;  1Z92 B;  4YWM A;  1BE7 A;  2C6B A;  5MLC 3;  1BRF A;  1E8J A;  2JI1 A;  1YV1 A;  3P2A A;  4AR3 A;  4JAE A;  1YUX A;  1B2J A;  2KKD A;  4AI1 A;  2MS3 A;  3P8B A;  5MGN A;  2XJQ A;  5EIO C;  4ZN3 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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