5GADc

Rnc-srp-sr complex early state
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
51
structure length
51
Chain Sequence
GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule keywords ESRP 4.5S RNA
total genus 6
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2015-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
c PF00471 Ribosomal_L33 Ribosomal protein L33
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.120 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 5gadc00
5JVH1 5H1Sc 5GAEc 5GAGc 4WFN1 3J7Z1 3PIO1 5JVG1 5MLC3 4UY81 5GAHc 3J7Y1 5DM61 3PIP1 5GADc 4U671 4V196 5DM71
chains in the Genus database with same CATH superfamily
3HKZP 4E6YA 2XJQA 1Y1WL 2QL0A 4ZN1B 1R0FA 1IU6A 1YK4A 2JI2A 5DM61 4JAGA 4V196 5DM71 5M5YL 3H9BA 1IROA 3HOVL 3H0GL 4LHLA 2M6OA 1NXGA 2V3BB 1T9QA 3S2HL 1DVBA 1R0JA 2HR5A 1E8JA 2JA5L 2PSMC 3PO3L 2XJRA 4TVMA 3A44A 5EIOC 1H7VA 1VZHA 5MGNA 1FHMA 1Y1VL 3LWRB 2B63L 4ZN3B 2NYDA 3LWPB 3PKJA 4YWLA 4G6BA 3S2DL 4Y7NL 4AHWA 4AHYA 4BY7L 4B8CD 1YK5A 1TWCL 3LNLA 4AHXA 5M3ML 2NVTL 5IYCL 5GADc 3GTPL 1I6HL 4GS7D 5K2ME 4AR4A 5AI2A 3GTML 1PFYA 3SS2A 3RZTA 1CAAA 2JA8L 3S1QL 2RFKB 4A93L 3H99A 4YWMA 4BBRL 1VZGA 4XGHA 1Z92B 1SMMA 3K35A 1S24A 2A68D 5JVH1 4A3LL 3J7Z1 1YUXA 1RWDA 4Y52L 2AYJA 2JA7L 2YU9L 3CQZL 5M5XL 2KN9A 3I4ML 4UY81 5MF6A 2C6BA 4JADA 4A3EL 3HJYB 4AR5A 3GTQL 5C4XL 4A3DL 3B08B 2O5JD 4A3IL 1IW7D 2Z3RB 4AR6A 3S16L 1WJVA 1R0HA 5C3EL 2XJPA 3S14L 4BBSL 5MFPA 5GAGc 1CADA 1BRFA 1IU5A 4C2M1 3KYUA 4JAFA 5H1Sc 2MS3A 2EY4E 3J7Y1 4A3FL 3S1ML 1T9PA 3NFPI 3RYGA 3LWOB 1K83L 2RDVA 3WWLA 2NVYL 3PKIA 4AI1A 2A6HD 3FKIL 3M4OL 3S1RL 3IU3I 1BQ9A 3ZG6A 3S15L 1PFWA 2NVQL 5FJ8L 4QIWP 1NXEA 1B2OA 5MLC3 5AN9H 1R0GA 8RXNA 3PIO1 1NNQA 2XJSA 2NVXL 3KYVA 5M5WL 5IYBL 4AI3A 1T9OA 2CKCA 1FHHA 1S30A 4K9FA 1SMWA 1YV1A 1LTLA 3PWFA 2E2JL 3VPBE 1QQTA 5FLML 1F4LA 4AYBP 2APOB 2WB1P 3GTJL 1RDVA 4A3ML 4AHZA 2A6ED 3GTLL 3LPEB 1LKMA 2L0ZA 4AI2A 1R9TL 2M4YA 1BE7A 1ZRPA 3KYYA 3M3YL 2K2DA 1I3QL 2ZIXA 4C3HL 3PZAA 1BQ8A 3HOUL 2V0FA 2B5ID 4POFA 3QVDA 3PO2L 1LKOA 1DX8A 1BFYA 4LHNA 3LWQB 1ODHA 2CR8A 1P7PA 1VZIA 3HOWL 2R7ZL 2JA6L 7RXNA 3JR7A 3RZ6A 2E2IL 5IP9L 2LCQA 5IYDL 1JYBA 2ERSA 5IY0A 1TWAL 1OWBA 3PL5A 5M3FL 3K7AL 5MFZA 3KYXA 1R0IA 4C3JL 2AUSB 4POGA 3GTOL 1RDGA 3HAXC 3FDJA 1I50L 4A3CL 1S2ZA 5EINC 4A3BL 2PMZP 5C44L 2VL6A 4AI0A 3WWNB 2XJUA 3PIP1 5GAEc 2R92L 2KKDA 3HOYL 2XJTA 4RXNA 1OWCA 2H12A 3RZOL 3MPSA 2HVYC 4TPUA 3P2AA 2BE5D 4ME3A 2GMGA 3MQKB 3RZDL 2M6PA 1LKPA 3H97A 5GAHc 4A3JL 4X6AL 1QCVA 4JAEA 1WCML 2JI3A 2PVEA 6RXNA 2PPTA 1C09A 5C4JL 3B0AB 3KYWA 2AQCA 4AR3A 1QYBA 1TWHL 4WFN1 3I4NL 2M4VA 2ERJA 1RB9A 3GTGL 3HOXL 1RYQA 2WAQP 2Z3QB 2PYAA 2J9UB 3LWVB 4A3GL 2Y0SP 1TWFL 3GTKL 1B2JA 1B71A 4BY1L 4XXBB 4C3IL 3HJWB 3S1NL 2XJVA 3MSUA 3P8BA 2E2HL 3S17L 1B13A 1PFUA 3QQCE 2VUML 3H3VM 4BXXL 1TWGL 3HOZL 1YUZA 1PFVA 1SMUA 4U671 2A69D 1SFOL 4A3KL 5AI3A 1IRNA 2DSXA 1PZXA 5IP7L 2R93L 2CKAA 5RXNA 1RYTA 2PVXA 2V0EA 2C6AA 3H9CA 1VCXA 2JI1A 5JVG1
chains in the Genus database with same CATH topology
2KN9A 3P2AA 1RDVA 4AHZA 2A6ED 2BE5D 4UY81 4ME3A 4E6YA 2GMGA 1LKMA 2L0ZA 2XJQA 3LPEB 4AI2A 2QL0A 2M4YA 1BE7A 5MF6A 4ZN1B 1ZRPA 2M6PA 2C6BA 1LKPA 1R0FA 1IU6A 1YK4A 2JI2A 4JADA 3KYYA 5GAHc 4AR5A 2K2DA 5DM61 4JAGA 3B08B 2ZIXA 5DM71 4V196 2O5JD 1IROA 1BQ8A 1IW7D 2Z3RB 3PZAA 4AR6A 4LHLA 2M6OA 1NXGA 1WJVA 1QCVA 2V0FA 1R0HA 2V3BB 1T9QA 2B5ID 4JAEA 4POFA 1DVBA 2JI3A 2PVEA 1R0JA 2HR5A 2XJPA 6RXNA 3QVDA 1E8JA 5MFPA 5GAGc 2PSMC 1LKOA 1CADA 1BRFA 1IU5A 2PPTA 1C09A 2XJRA 3KYUA 1DX8A 4JAFA 5H1Sc 3B0AB 3KYWA 2MS3A 3A44A 5EIOC 1BFYA 4LHNA 1H7VA 1VZHA 1ODHA 2CR8A 3J7Y1 5MGNA 1VZIA 4AR3A 1FHMA 1QYBA 4WFN1 1T9PA 3NFPI 4ZN3B 2NYDA 7RXNA 2M4VA 3PKJA 2ERJA 4YWLA 3RYGA 4G6BA 1RB9A 3RZ6A 1RYQA 2Z3QB 2LCQA 1JYBA 2ERSA 2PYAA 2RDVA 3WWLA 3PKIA 2J9UB 4AI1A 4AHWA 4AHYA 5IY0A 1OWBA 4B8CD 1YK5A 5MFZA 2A6HD 3LNLA 5JVG1 4AHXA 3KYXA 1B2JA 1R0IA 5GADc 3IU3I 1B71A 4XXBB 4GS7D 1BQ9A 2XJVA 3MSUA 3P8BA 5K2ME 3ZG6A 4POGA 4AR4A 5AI2A 1B13A 3SS2A 1RDGA 3QQCE 3RZTA 1CAAA 2JI1A 1NXEA 1B2OA 1S2ZA 5MLC3 5AN9H 5EINC 1R0GA 4YWMA 8RXNA 2VL6A 3PIO1 1NNQA 1YUZA 2XJSA 1SMUA 1VZGA 4XGHA 1Z92B 3WWNB 2XJUA 4AI0A 3KYVA 3PIP1 4AI3A 4U671 1T9OA 2CKCA 2A69D 3K35A 5GAEc 1FHHA 1S30A 5AI3A 1S24A 2A68D 2KKDA 2XJTA 4RXNA 1IRNA 4K9FA 1OWCA 2DSXA 5JVH1 2H12A 1SMWA 3J7Z1 1YUXA 1YV1A 2CKAA 1LTLA 5RXNA 1RYTA 3MPSA 3PWFA 2PVXA 1RWDA 3VPBE 2V0EA 4TPUA 2AYJA 2C6AA 1VCXA 1SMMA 4TVMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JVH 1;  5H1S c;  5GAE c;  5GAG c;  4WFN 1;  3J7Z 1;  3PIO 1;  5JVG 1;  5MLC 3;  4UY8 1;  5GAH c;  3J7Y 1;  5DM6 1;  3PIP 1;  5GAD c;  4U67 1;  4V19 6;  5DM7 1; 
#chains in the Genus database with same CATH topology
 3HKZ P;  4E6Y A;  2XJQ A;  1Y1W L;  2QL0 A;  4ZN1 B;  1R0F A;  1IU6 A;  1YK4 A;  2JI2 A;  5DM6 1;  4JAG A;  4V19 6;  5DM7 1;  5M5Y L;  3H9B A;  1IRO A;  3HOV L;  3H0G L;  4LHL A;  2M6O A;  1NXG A;  2V3B B;  1T9Q A;  3S2H L;  1DVB A;  1R0J A;  2HR5 A;  1E8J A;  2JA5 L;  2PSM C;  3PO3 L;  2XJR A;  4TVM A;  3A44 A;  5EIO C;  1H7V A;  1VZH A;  5MGN A;  1FHM A;  1Y1V L;  3LWR B;  2B63 L;  4ZN3 B;  2NYD A;  3LWP B;  3PKJ A;  4YWL A;  4G6B A;  3S2D L;  4Y7N L;  4AHW A;  4AHY A;  4BY7 L;  4B8C D;  1YK5 A;  1TWC L;  3LNL A;  4AHX A;  5M3M L;  2NVT L;  5IYC L;  5GAD c;  3GTP L;  1I6H L;  4GS7 D;  5K2M E;  4AR4 A;  5AI2 A;  3GTM L;  1PFY A;  3SS2 A;  3RZT A;  1CAA A;  2JA8 L;  3S1Q L;  2RFK B;  4A93 L;  3H99 A;  4YWM A;  4BBR L;  1VZG A;  4XGH A;  1Z92 B;  1SMM A;  3K35 A;  1S24 A;  2A68 D;  5JVH 1;  4A3L L;  3J7Z 1;  1YUX A;  1RWD A;  4Y52 L;  2AYJ A;  2JA7 L;  2YU9 L;  3CQZ L;  5M5X L;  2KN9 A;  3I4M L;  4UY8 1;  5MF6 A;  2C6B A;  4JAD A;  4A3E L;  3HJY B;  4AR5 A;  3GTQ L;  5C4X L;  4A3D L;  3B08 B;  2O5J D;  4A3I L;  1IW7 D;  2Z3R B;  4AR6 A;  3S16 L;  1WJV A;  1R0H A;  5C3E L;  2XJP A;  3S14 L;  4BBS L;  5MFP A;  5GAG c;  1CAD A;  1BRF A;  1IU5 A;  4C2M 1;  3KYU A;  4JAF A;  5H1S c;  2MS3 A;  2EY4 E;  3J7Y 1;  4A3F L;  3S1M L;  1T9P A;  3NFP I;  3RYG A;  3LWO B;  1K83 L;  2RDV A;  3WWL A;  2NVY L;  3PKI A;  4AI1 A;  2A6H D;  3FKI L;  3M4O L;  3S1R L;  3IU3 I;  1BQ9 A;  3ZG6 A;  3S15 L;  1PFW A;  2NVQ L;  5FJ8 L;  4QIW P;  1NXE A;  1B2O A;  5MLC 3;  5AN9 H;  1R0G A;  8RXN A;  3PIO 1;  1NNQ A;  2XJS A;  2NVX L;  3KYV A;  5M5W L;  5IYB L;  4AI3 A;  1T9O A;  2CKC A;  1FHH A;  1S30 A;  4K9F A;  1SMW A;  1YV1 A;  1LTL A;  3PWF A;  2E2J L;  3VPB E;  1QQT A;  5FLM L;  1F4L A;  4AYB P;  2APO B;  2WB1 P;  3GTJ L;  1RDV A;  4A3M L;  4AHZ A;  2A6E D;  3GTL L;  3LPE B;  1LKM A;  2L0Z A;  4AI2 A;  1R9T L;  2M4Y A;  1BE7 A;  1ZRP A;  3KYY A;  3M3Y L;  2K2D A;  1I3Q L;  2ZIX A;  4C3H L;  3PZA A;  1BQ8 A;  3HOU L;  2V0F A;  2B5I D;  4POF A;  3QVD A;  3PO2 L;  1LKO A;  1DX8 A;  1BFY A;  4LHN A;  3LWQ B;  1ODH A;  2CR8 A;  1P7P A;  1VZI A;  3HOW L;  2R7Z L;  2JA6 L;  7RXN A;  3JR7 A;  3RZ6 A;  2E2I L;  5IP9 L;  2LCQ A;  5IYD L;  1JYB A;  2ERS A;  5IY0 A;  1TWA L;  1OWB A;  3PL5 A;  5M3F L;  3K7A L;  5MFZ A;  3KYX A;  1R0I A;  4C3J L;  2AUS B;  4POG A;  3GTO L;  1RDG A;  3HAX C;  3FDJ A;  1I50 L;  4A3C L;  1S2Z A;  5EIN C;  4A3B L;  2PMZ P;  5C44 L;  2VL6 A;  4AI0 A;  3WWN B;  2XJU A;  3PIP 1;  5GAE c;  2R92 L;  2KKD A;  3HOY L;  2XJT A;  4RXN A;  1OWC A;  2H12 A;  3RZO L;  3MPS A;  2HVY C;  4TPU A;  3P2A A;  2BE5 D;  4ME3 A;  2GMG A;  3MQK B;  3RZD L;  2M6P A;  1LKP A;  3H97 A;  5GAH c;  4A3J L;  4X6A L;  1QCV A;  4JAE A;  1WCM L;  2JI3 A;  2PVE A;  6RXN A;  2PPT A;  1C09 A;  5C4J L;  3B0A B;  3KYW A;  2AQC A;  4AR3 A;  1QYB A;  1TWH L;  4WFN 1;  3I4N L;  2M4V A;  2ERJ A;  1RB9 A;  3GTG L;  3HOX L;  1RYQ A;  2WAQ P;  2Z3Q B;  2PYA A;  2J9U B;  3LWV B;  4A3G L;  2Y0S P;  1TWF L;  3GTK L;  1B2J A;  1B71 A;  4BY1 L;  4XXB B;  4C3I L;  3HJW B;  3S1N L;  2XJV A;  3MSU A;  3P8B A;  2E2H L;  3S17 L;  1B13 A;  1PFU A;  3QQC E;  2VUM L;  3H3V M;  4BXX L;  1TWG L;  3HOZ L;  1YUZ A;  1PFV A;  1SMU A;  4U67 1;  2A69 D;  1SFO L;  4A3K L;  5AI3 A;  1IRN A;  2DSX A;  1PZX A;  5IP7 L;  2R93 L;  2CKA A;  5RXN A;  1RYT A;  2PVX A;  2V0E A;  2C6A A;  3H9C A;  1VCX A;  2JI1 A;  5JVG 1; 
#chains in the Genus database with same CATH homology
 2KN9 A;  3P2A A;  1RDV A;  4AHZ A;  2A6E D;  2BE5 D;  4UY8 1;  4ME3 A;  4E6Y A;  2GMG A;  1LKM A;  2L0Z A;  2XJQ A;  3LPE B;  4AI2 A;  2QL0 A;  2M4Y A;  1BE7 A;  5MF6 A;  4ZN1 B;  1ZRP A;  2M6P A;  2C6B A;  1LKP A;  1R0F A;  1IU6 A;  1YK4 A;  2JI2 A;  4JAD A;  3KYY A;  5GAH c;  4AR5 A;  2K2D A;  5DM6 1;  4JAG A;  3B08 B;  2ZIX A;  5DM7 1;  4V19 6;  2O5J D;  1IRO A;  1BQ8 A;  1IW7 D;  2Z3R B;  3PZA A;  4AR6 A;  4LHL A;  2M6O A;  1NXG A;  1WJV A;  1QCV A;  2V0F A;  1R0H A;  2V3B B;  1T9Q A;  2B5I D;  4JAE A;  4POF A;  1DVB A;  2JI3 A;  2PVE A;  1R0J A;  2HR5 A;  2XJP A;  6RXN A;  3QVD A;  1E8J A;  5MFP A;  5GAG c;  2PSM C;  1LKO A;  1CAD A;  1BRF A;  1IU5 A;  2PPT A;  1C09 A;  2XJR A;  3KYU A;  1DX8 A;  4JAF A;  5H1S c;  3B0A B;  3KYW A;  2MS3 A;  3A44 A;  5EIO C;  1BFY A;  4LHN A;  1H7V A;  1VZH A;  1ODH A;  2CR8 A;  3J7Y 1;  5MGN A;  1VZI A;  4AR3 A;  1FHM A;  1QYB A;  4WFN 1;  1T9P A;  3NFP I;  4ZN3 B;  2NYD A;  7RXN A;  2M4V A;  3PKJ A;  2ERJ A;  4YWL A;  3RYG A;  4G6B A;  1RB9 A;  3RZ6 A;  1RYQ A;  2Z3Q B;  2LCQ A;  1JYB A;  2ERS A;  2PYA A;  2RDV A;  3WWL A;  3PKI A;  2J9U B;  4AI1 A;  4AHW A;  4AHY A;  5IY0 A;  1OWB A;  4B8C D;  1YK5 A;  5MFZ A;  2A6H D;  3LNL A;  5JVG 1;  4AHX A;  3KYX A;  1B2J A;  1R0I A;  5GAD c;  3IU3 I;  1B71 A;  4XXB B;  4GS7 D;  1BQ9 A;  2XJV A;  3MSU A;  3P8B A;  5K2M E;  3ZG6 A;  4POG A;  4AR4 A;  5AI2 A;  1B13 A;  3SS2 A;  1RDG A;  3QQC E;  3RZT A;  1CAA A;  2JI1 A;  1NXE A;  1B2O A;  1S2Z A;  5MLC 3;  5AN9 H;  5EIN C;  1R0G A;  4YWM A;  8RXN A;  2VL6 A;  3PIO 1;  1NNQ A;  1YUZ A;  2XJS A;  1SMU A;  1VZG A;  4XGH A;  1Z92 B;  3WWN B;  2XJU A;  4AI0 A;  3KYV A;  3PIP 1;  4AI3 A;  4U67 1;  1T9O A;  2CKC A;  2A69 D;  3K35 A;  5GAE c;  1FHH A;  1S30 A;  5AI3 A;  1S24 A;  2A68 D;  2KKD A;  2XJT A;  4RXN A;  1IRN A;  4K9F A;  1OWC A;  2DSX A;  5JVH 1;  2H12 A;  1SMW A;  3J7Z 1;  1YUX A;  1YV1 A;  2CKA A;  1LTL A;  5RXN A;  1RYT A;  3MPS A;  3PWF A;  2PVX A;  1RWD A;  3VPB E;  2V0E A;  4TPU A;  2AYJ A;  2C6A A;  1VCX A;  1SMM A;  4TVM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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