5GAGO

Rnc in complex with srp-sr in the closed state
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
125
structure length
125
Chain Sequence
MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKAEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
source organism Escherichia coli
total genus 37
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01196 Ribosomal_L17 Ribosomal protein L17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 5gagO01
4U67K 5DM6K 3DLLK 5H1SP 4IO9K 2CQMA 3PIPK 4WFAK 4WF9K 5GADO 5DM7K 5GAEO 5MLCP 4IOAK 4WCEK 4UY8N 4WFNK 5HL7K 2ZJQK 3J7ZN 5JVGK 2ZJRK 1GD8A 2ZJPK 5GAGO 4WFBK 5JVHK 4IOCK 5GAHO 3PIOK 3CF5K
chains in the Genus database with same CATH superfamily
4U67K 5DM6K 3DLLK 5H1SP 4IO9K 2CQMA 3PIPK 4WFAK 4WF9K 5GADO 5DM7K 5GAEO 5MLCP 4IOAK 4WCEK 4UY8N 4WFNK 5HL7K 2ZJQK 3J7ZN 5JVGK 2ZJRK 1GD8A 2ZJPK 5GAGO 4WFBK 5JVHK 4IOCK 5GAHO 3PIOK 3CF5K
chains in the Genus database with same CATH topology
4U67K 5DM6K 3DLLK 5H1SP 4IO9K 2CQMA 3PIPK 4WFAK 4WF9K 5GADO 5DM7K 5GAEO 5MLCP 4IOAK 4WCEK 4UY8N 4WFNK 5HL7K 2ZJQK 3J7ZN 5JVGK 2ZJRK 1GD8A 2ZJPK 5GAGO 4WFBK 5JVHK 4IOCK 5GAHO 3PIOK 3CF5K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U67 K;  5DM6 K;  3DLL K;  5H1S P;  4IO9 K;  2CQM A;  3PIP K;  4WFA K;  4WF9 K;  5GAD O;  5DM7 K;  5GAE O;  5MLC P;  4IOA K;  4WCE K;  4UY8 N;  4WFN K;  5HL7 K;  2ZJQ K;  3J7Z N;  5JVG K;  2ZJR K;  1GD8 A;  2ZJP K;  5GAG O;  4WFB K;  5JVH K;  4IOC K;  5GAH O;  3PIO K;  3CF5 K; 
#chains in the Genus database with same CATH topology
 4U67 K;  5DM6 K;  3DLL K;  5H1S P;  4IO9 K;  2CQM A;  3PIP K;  4WFA K;  4WF9 K;  5GAD O;  5DM7 K;  5GAE O;  5MLC P;  4IOA K;  4WCE K;  4UY8 N;  4WFN K;  5HL7 K;  2ZJQ K;  3J7Z N;  5JVG K;  2ZJR K;  1GD8 A;  2ZJP K;  5GAG O;  4WFB K;  5JVH K;  4IOC K;  5GAH O;  3PIO K;  3CF5 K; 
#chains in the Genus database with same CATH homology
 4U67 K;  5DM6 K;  3DLL K;  5H1S P;  4IO9 K;  2CQM A;  3PIP K;  4WFA K;  4WF9 K;  5GAD O;  5DM7 K;  5GAE O;  5MLC P;  4IOA K;  4WCE K;  4UY8 N;  4WFN K;  5HL7 K;  2ZJQ K;  3J7Z N;  5JVG K;  2ZJR K;  1GD8 A;  2ZJP K;  5GAG O;  4WFB K;  5JVH K;  4IOC K;  5GAH O;  3PIO K;  3CF5 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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