5GAHF

Rnc in complex with srp with detached ng domain
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
177
structure length
177
Chain Sequence
AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 38
structure length 177
sequence length 177
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF00281 Ribosomal_L5 Ribosomal protein L5
F PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A, 50s Ribosomal Protein L5; Chain: A, 5gahF00
5H1SH 1Q7YF 1S72D 3CXCD 1VQ8D 1VQ9D 2NWUA 1NJIF 3G6ED 4WCED 3PIOD 1VQND 1YITD 2PZZA 1Q82F 5GADF 2ZJPD 4IOCD 5GAEF 3G71D 3CCSD 1IQ4A 1VQMD 1N8RF 1JJ2D 2OTLD 3I55D 1M90F 1K73F 3CMED 2QEXD 5GAHF 3CCLD 4U67D 2OGKA 5MLCG 5DM7D 3CCRD 3I56D 1VQKD 3G4SD 1M1KF 2NRQA 3CCVD 3PIPD 4IOAD 1YJ9D 1KQSD 5JVGD 3C9GA 1VQPD 4IO9D 3CPWD 1QVGD 3CC7D 3CC2D 4WF9D 1VQ4D 3CMAD 4WFAD 2ZJQD 5GAGF 1YI2D 1VQ6D 1VQOD 3CCED 5DM6D 1VQ7D 5JVHD 3OW2D 3DLLD 3J7ZF 1VQ5D 3CCMD 1YHQD 1KD1F 3CF5D 4UY8F 1Q86F 3CCUD 1KC8F 2OTJD 3CD6D 1YJND 2QA4D 3CCJD 1VQLD 4WFND 1QVFD 3CC4D 1YIJD 2ZJRD 1K9MF 1MJIA 2WNYA 3CCQD 1Q81F 5HL7D 3D7AA 4WFBD 1YJWD 1W2BD 1K8AF
chains in the Genus database with same CATH superfamily
5H1SH 1Q7YF 1S72D 3CXCD 1VQ8D 1VQ9D 2NWUA 1NJIF 3G6ED 4WCED 3PIOD 1VQND 1YITD 2PZZA 1Q82F 5GADF 2ZJPD 4IOCD 5GAEF 3G71D 3CCSD 1IQ4A 1VQMD 1N8RF 1JJ2D 2OTLD 3I55D 1M90F 1K73F 3CMED 2QEXD 5GAHF 3CCLD 4U67D 2OGKA 5MLCG 5DM7D 3CCRD 3I56D 1VQKD 3G4SD 1M1KF 2NRQA 3CCVD 3PIPD 4IOAD 1YJ9D 1KQSD 5JVGD 3C9GA 1VQPD 4IO9D 3CPWD 1QVGD 3CC7D 3CC2D 4WF9D 1VQ4D 3CMAD 4WFAD 2ZJQD 5GAGF 1YI2D 1VQ6D 1VQOD 3CCED 5DM6D 1VQ7D 5JVHD 3OW2D 3DLLD 3J7ZF 1VQ5D 3CCMD 1YHQD 1KD1F 3CF5D 4UY8F 1Q86F 3CCUD 1KC8F 2OTJD 3CD6D 1YJND 2QA4D 3CCJD 1VQLD 4WFND 1QVFD 3CC4D 1YIJD 2ZJRD 1K9MF 1MJIA 2WNYA 3CCQD 1Q81F 5HL7D 3D7AA 4WFBD 1YJWD 1W2BD 1K8AF
chains in the Genus database with same CATH topology
5H1SH 1Q7YF 1S72D 3CXCD 1VQ8D 1VQ9D 2NWUA 1NJIF 3G6ED 4WCED 3PIOD 1VQND 1YITD 2PZZA 1Q82F 5GADF 2ZJPD 4IOCD 5GAEF 3G71D 3CCSD 1IQ4A 1VQMD 1N8RF 1JJ2D 2OTLD 3I55D 1M90F 1K73F 3CMED 2QEXD 5GAHF 3CCLD 4U67D 2OGKA 5MLCG 5DM7D 3CCRD 3I56D 1VQKD 3G4SD 1M1KF 2NRQA 3CCVD 3PIPD 4IOAD 1YJ9D 1KQSD 5JVGD 3C9GA 1VQPD 4IO9D 3CPWD 1QVGD 3CC7D 3CC2D 4WF9D 1VQ4D 3CMAD 4WFAD 2ZJQD 5GAGF 1YI2D 1VQ6D 1VQOD 3CCED 5DM6D 1VQ7D 5JVHD 3OW2D 3DLLD 3J7ZF 1VQ5D 3CCMD 1YHQD 1KD1F 3CF5D 4UY8F 1Q86F 3CCUD 1KC8F 2OTJD 3CD6D 1YJND 2QA4D 3CCJD 1VQLD 4WFND 1QVFD 3CC4D 1YIJD 2ZJRD 1K9MF 1MJIA 2WNYA 3CCQD 1Q81F 5HL7D 3D7AA 4WFBD 1YJWD 1W2BD 1K8AF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H1S H;  1Q7Y F;  1S72 D;  3CXC D;  1VQ8 D;  1VQ9 D;  2NWU A;  1NJI F;  3G6E D;  4WCE D;  3PIO D;  1VQN D;  1YIT D;  2PZZ A;  1Q82 F;  5GAD F;  2ZJP D;  4IOC D;  5GAE F;  3G71 D;  3CCS D;  1IQ4 A;  1VQM D;  1N8R F;  1JJ2 D;  2OTL D;  3I55 D;  1M90 F;  1K73 F;  3CME D;  2QEX D;  5GAH F;  3CCL D;  4U67 D;  2OGK A;  5MLC G;  5DM7 D;  3CCR D;  3I56 D;  1VQK D;  3G4S D;  1M1K F;  2NRQ A;  3CCV D;  3PIP D;  4IOA D;  1YJ9 D;  1KQS D;  5JVG D;  3C9G A;  1VQP D;  4IO9 D;  3CPW D;  1QVG D;  3CC7 D;  3CC2 D;  4WF9 D;  1VQ4 D;  3CMA D;  4WFA D;  2ZJQ D;  5GAG F;  1YI2 D;  1VQ6 D;  1VQO D;  3CCE D;  5DM6 D;  1VQ7 D;  5JVH D;  3OW2 D;  3DLL D;  3J7Z F;  1VQ5 D;  3CCM D;  1YHQ D;  1KD1 F;  3CF5 D;  4UY8 F;  1Q86 F;  3CCU D;  1KC8 F;  2OTJ D;  3CD6 D;  1YJN D;  2QA4 D;  3CCJ D;  1VQL D;  4WFN D;  1QVF D;  3CC4 D;  1YIJ D;  2ZJR D;  1K9M F;  1MJI A;  2WNY A;  3CCQ D;  1Q81 F;  5HL7 D;  3D7A A;  4WFB D;  1YJW D;  1W2B D;  1K8A F; 
#chains in the Genus database with same CATH topology
 5H1S H;  1Q7Y F;  1S72 D;  3CXC D;  1VQ8 D;  1VQ9 D;  2NWU A;  1NJI F;  3G6E D;  4WCE D;  3PIO D;  1VQN D;  1YIT D;  2PZZ A;  1Q82 F;  5GAD F;  2ZJP D;  4IOC D;  5GAE F;  3G71 D;  3CCS D;  1IQ4 A;  1VQM D;  1N8R F;  1JJ2 D;  2OTL D;  3I55 D;  1M90 F;  1K73 F;  3CME D;  2QEX D;  5GAH F;  3CCL D;  4U67 D;  2OGK A;  5MLC G;  5DM7 D;  3CCR D;  3I56 D;  1VQK D;  3G4S D;  1M1K F;  2NRQ A;  3CCV D;  3PIP D;  4IOA D;  1YJ9 D;  1KQS D;  5JVG D;  3C9G A;  1VQP D;  4IO9 D;  3CPW D;  1QVG D;  3CC7 D;  3CC2 D;  4WF9 D;  1VQ4 D;  3CMA D;  4WFA D;  2ZJQ D;  5GAG F;  1YI2 D;  1VQ6 D;  1VQO D;  3CCE D;  5DM6 D;  1VQ7 D;  5JVH D;  3OW2 D;  3DLL D;  3J7Z F;  1VQ5 D;  3CCM D;  1YHQ D;  1KD1 F;  3CF5 D;  4UY8 F;  1Q86 F;  3CCU D;  1KC8 F;  2OTJ D;  3CD6 D;  1YJN D;  2QA4 D;  3CCJ D;  1VQL D;  4WFN D;  1QVF D;  3CC4 D;  1YIJ D;  2ZJR D;  1K9M F;  1MJI A;  2WNY A;  3CCQ D;  1Q81 F;  5HL7 D;  3D7A A;  4WFB D;  1YJW D;  1W2B D;  1K8A F; 
#chains in the Genus database with same CATH homology
 5H1S H;  1Q7Y F;  1S72 D;  3CXC D;  1VQ8 D;  1VQ9 D;  2NWU A;  1NJI F;  3G6E D;  4WCE D;  3PIO D;  1VQN D;  1YIT D;  2PZZ A;  1Q82 F;  5GAD F;  2ZJP D;  4IOC D;  5GAE F;  3G71 D;  3CCS D;  1IQ4 A;  1VQM D;  1N8R F;  1JJ2 D;  2OTL D;  3I55 D;  1M90 F;  1K73 F;  3CME D;  2QEX D;  5GAH F;  3CCL D;  4U67 D;  2OGK A;  5MLC G;  5DM7 D;  3CCR D;  3I56 D;  1VQK D;  3G4S D;  1M1K F;  2NRQ A;  3CCV D;  3PIP D;  4IOA D;  1YJ9 D;  1KQS D;  5JVG D;  3C9G A;  1VQP D;  4IO9 D;  3CPW D;  1QVG D;  3CC7 D;  3CC2 D;  4WF9 D;  1VQ4 D;  3CMA D;  4WFA D;  2ZJQ D;  5GAG F;  1YI2 D;  1VQ6 D;  1VQO D;  3CCE D;  5DM6 D;  1VQ7 D;  5JVH D;  3OW2 D;  3DLL D;  3J7Z F;  1VQ5 D;  3CCM D;  1YHQ D;  1KD1 F;  3CF5 D;  4UY8 F;  1Q86 F;  3CCU D;  1KC8 F;  2OTJ D;  3CD6 D;  1YJN D;  2QA4 D;  3CCJ D;  1VQL D;  4WFN D;  1QVF D;  3CC4 D;  1YIJ D;  2ZJR D;  1K9M F;  1MJI A;  2WNY A;  3CCQ D;  1Q81 F;  5HL7 D;  3D7A A;  4WFB D;  1YJW D;  1W2B D;  1K8A F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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