5GAHG

Rnc in complex with srp with detached ng domain
Total Genus 34
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
176
structure length
176
Chain Sequence
SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 34
structure length 176
sequence length 176
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 5gahG02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 5gahG01
2QA4E 5GAGG 3CCVE 1KC8G 1VQ5E 4IOAE 5GADG 1KD1G 5GAEG 3CC2E 1YJNE 1VQ7E 1VQNE 1JJ2E 1YHQE 5JVHE 1M90G 1Q81G 1KQSE 2CQLA 1Q7YG 3PIOE 4U67E 1N8RG 1VQ8E 4WFAE 1VQ9E 2ZJQE 3J7ZG 3G71E 5AN9B 3I55E 5H1SI 4WCEE 2QEXE 3CCME 4WFBE 1K8AG 3OW2E 1VQKE 4WF9E 3DLLE 1S72E 1K9MG 3CCEE 2ZJRE 3PIPE 4IOCE 3CCJE 3G6EE 3CCLE 3G4SE 5HL7E 5MLCH 1YIJE 1K73G 3I56E 3CCRE 2OTLE 3CD6E 1YI2E 1Q86G 1QVFE 1VQLE 3CC4E 1RL6A 5DM6E 2OTJE 1QVGE 1YJ9E 4UY8G 3CPWE 3CCSE 1VQOE 1YITE 1M1KG 4WFNE 4IO9E 3CF5E 1VQPE 3CC7E 1W2BE 1YJWE 5JVGE 5GAHG 3CMEE 1VQ6E 3CCQE 1Q82G 2ZJPE 1VQME 3CMAE 5DM7E 3CCUE 1VQ4E 3CXCE 1NJIG
chains in the Genus database with same CATH superfamily
2QA4E 5GAGG 3CCVE 1KC8G 1VQ5E 4IOAE 5GADG 1KD1G 5GAEG 3CC2E 1YJNE 1P4PA 1VQ7E 1FJ1E 1VQNE 3IGEA 1YHQE 5JVHE 1M90G 1JJ2E 1Q81G 1KQSE 2CQLA 1Q7YG 3PIOE 4U67E 1N8RG 1VQ8E 4WFAE 1VQ9E 3CKFA 3CKGA 2ZJQE 3J7ZG 3G71E 5AN9B 3I55E 1OSPO 5H1SI 4WCEE 2QEXE 3CCME 4WFBE 3AUMO 1K8AG 2HKDA 5B10O 2PI3O 3OW2E 1VQKE 4WF9E 3DLLE 1S72E 1K9MG 2OY8A 3CCEE 2ZJRE 3PIPE 4IOCE 3CCJE 3G6EE 2FKGA 5B2AO 3CCLE 3G4SE 5HL7E 5MLCH 1YIJE 1K73G 3I56E 3CCRE 2OTLE 3CD6E 2FKJA 3IG9A 1YI2E 1Q86G 1QVFE 2I5ZO 1VQLE 3CC4E 2OY7A 2OYBO 1RL6A 5DM6E 2OTJE 1QVGE 1RJLC 1YJ9E 2OL7A 2G8CO 4UY8G 3CPWE 3CCSE 1VQOE 1YITE 1M1KG 4WFNE 4IO9E 3EC5A 3CF5E 1VQPE 3CC7E 1W2BE 2OL6O 1YJWE 5JVGE 5GAHG 2AF5A 3CMEE 1VQ6E 5B3MO 2I5VO 3CCQE 2OY1O 2OY5O 1Q82G 2ZJPE 1VQME 2OL8O 3CMAE 5DM7E 3CCUE 5B11O 1VQ4E 3CXCE 1NJIG
chains in the Genus database with same CATH topology
2QA4E 5GAGG 3CCVE 1KC8G 1VQ5E 4IOAE 5GADG 1KD1G 5GAEG 3CC2E 1YJNE 1VQ7E 1VQNE 1JJ2E 1YHQE 5JVHE 1M90G 1Q81G 1KQSE 2CQLA 1Q7YG 3PIOE 4U67E 1N8RG 1VQ8E 4WFAE 1VQ9E 2ZJQE 3J7ZG 3G71E 5AN9B 3I55E 5H1SI 4WCEE 2QEXE 3CCME 4WFBE 1K8AG 3OW2E 1VQKE 4WF9E 3DLLE 1S72E 1K9MG 3CCEE 2ZJRE 3PIPE 4IOCE 3CCJE 3G6EE 3CCLE 3G4SE 5HL7E 5MLCH 1YIJE 1K73G 3I56E 3CCRE 2OTLE 3CD6E 1YI2E 1Q86G 1QVFE 1VQLE 3CC4E 1RL6A 5DM6E 2OTJE 1QVGE 1YJ9E 4UY8G 3CPWE 3CCSE 1VQOE 1YITE 1M1KG 4WFNE 4IO9E 3CF5E 1VQPE 3CC7E 1W2BE 1YJWE 5JVGE 5GAHG 3CMEE 1VQ6E 3CCQE 1Q82G 2ZJPE 1VQME 3CMAE 5DM7E 3CCUE 1VQ4E 3CXCE 1NJIG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QA4 E;  5GAG G;  3CCV E;  1KC8 G;  1VQ5 E;  4IOA E;  5GAD G;  1KD1 G;  5GAE G;  3CC2 E;  1YJN E;  1VQ7 E;  1VQN E;  1JJ2 E;  1YHQ E;  5JVH E;  1M90 G;  1Q81 G;  1KQS E;  2CQL A;  1Q7Y G;  3PIO E;  4U67 E;  1N8R G;  1VQ8 E;  4WFA E;  1VQ9 E;  2ZJQ E;  3J7Z G;  3G71 E;  5AN9 B;  3I55 E;  5H1S I;  4WCE E;  2QEX E;  3CCM E;  4WFB E;  1K8A G;  3OW2 E;  1VQK E;  4WF9 E;  3DLL E;  1S72 E;  1K9M G;  3CCE E;  2ZJR E;  3PIP E;  4IOC E;  3CCJ E;  3G6E E;  3CCL E;  3G4S E;  5HL7 E;  5MLC H;  1YIJ E;  1K73 G;  3I56 E;  3CCR E;  2OTL E;  3CD6 E;  1YI2 E;  1Q86 G;  1QVF E;  1VQL E;  3CC4 E;  1RL6 A;  5DM6 E;  2OTJ E;  1QVG E;  1YJ9 E;  4UY8 G;  3CPW E;  3CCS E;  1VQO E;  1YIT E;  1M1K G;  4WFN E;  4IO9 E;  3CF5 E;  1VQP E;  3CC7 E;  1W2B E;  1YJW E;  5JVG E;  5GAH G;  3CME E;  1VQ6 E;  3CCQ E;  1Q82 G;  2ZJP E;  1VQM E;  3CMA E;  5DM7 E;  3CCU E;  1VQ4 E;  3CXC E;  1NJI G; 
#chains in the Genus database with same CATH topology
 2QA4 E;  5GAG G;  3CCV E;  1KC8 G;  1VQ5 E;  4IOA E;  5GAD G;  1KD1 G;  5GAE G;  3CC2 E;  1YJN E;  1P4P A;  1VQ7 E;  1FJ1 E;  1VQN E;  3IGE A;  1YHQ E;  5JVH E;  1M90 G;  1JJ2 E;  1Q81 G;  1KQS E;  2CQL A;  1Q7Y G;  3PIO E;  4U67 E;  1N8R G;  1VQ8 E;  4WFA E;  1VQ9 E;  3CKF A;  3CKG A;  2ZJQ E;  3J7Z G;  3G71 E;  5AN9 B;  3I55 E;  1OSP O;  5H1S I;  4WCE E;  2QEX E;  3CCM E;  4WFB E;  3AUM O;  1K8A G;  2HKD A;  5B10 O;  2PI3 O;  3OW2 E;  1VQK E;  4WF9 E;  3DLL E;  1S72 E;  1K9M G;  2OY8 A;  3CCE E;  2ZJR E;  3PIP E;  4IOC E;  3CCJ E;  3G6E E;  2FKG A;  5B2A O;  3CCL E;  3G4S E;  5HL7 E;  5MLC H;  1YIJ E;  1K73 G;  3I56 E;  3CCR E;  2OTL E;  3CD6 E;  2FKJ A;  3IG9 A;  1YI2 E;  1Q86 G;  1QVF E;  2I5Z O;  1VQL E;  3CC4 E;  2OY7 A;  2OYB O;  1RL6 A;  5DM6 E;  2OTJ E;  1QVG E;  1RJL C;  1YJ9 E;  2OL7 A;  2G8C O;  4UY8 G;  3CPW E;  3CCS E;  1VQO E;  1YIT E;  1M1K G;  4WFN E;  4IO9 E;  3EC5 A;  3CF5 E;  1VQP E;  3CC7 E;  1W2B E;  2OL6 O;  1YJW E;  5JVG E;  5GAH G;  2AF5 A;  3CME E;  1VQ6 E;  5B3M O;  2I5V O;  3CCQ E;  2OY1 O;  2OY5 O;  1Q82 G;  2ZJP E;  1VQM E;  2OL8 O;  3CMA E;  5DM7 E;  3CCU E;  5B11 O;  1VQ4 E;  3CXC E;  1NJI G; 
#chains in the Genus database with same CATH homology
 2QA4 E;  5GAG G;  3CCV E;  1KC8 G;  1VQ5 E;  4IOA E;  5GAD G;  1KD1 G;  5GAE G;  3CC2 E;  1YJN E;  1VQ7 E;  1VQN E;  1JJ2 E;  1YHQ E;  5JVH E;  1M90 G;  1Q81 G;  1KQS E;  2CQL A;  1Q7Y G;  3PIO E;  4U67 E;  1N8R G;  1VQ8 E;  4WFA E;  1VQ9 E;  2ZJQ E;  3J7Z G;  3G71 E;  5AN9 B;  3I55 E;  5H1S I;  4WCE E;  2QEX E;  3CCM E;  4WFB E;  1K8A G;  3OW2 E;  1VQK E;  4WF9 E;  3DLL E;  1S72 E;  1K9M G;  3CCE E;  2ZJR E;  3PIP E;  4IOC E;  3CCJ E;  3G6E E;  3CCL E;  3G4S E;  5HL7 E;  5MLC H;  1YIJ E;  1K73 G;  3I56 E;  3CCR E;  2OTL E;  3CD6 E;  1YI2 E;  1Q86 G;  1QVF E;  1VQL E;  3CC4 E;  1RL6 A;  5DM6 E;  2OTJ E;  1QVG E;  1YJ9 E;  4UY8 G;  3CPW E;  3CCS E;  1VQO E;  1YIT E;  1M1K G;  4WFN E;  4IO9 E;  3CF5 E;  1VQP E;  3CC7 E;  1W2B E;  1YJW E;  5JVG E;  5GAH G;  3CME E;  1VQ6 E;  3CCQ E;  1Q82 G;  2ZJP E;  1VQM E;  3CMA E;  5DM7 E;  3CCU E;  1VQ4 E;  3CXC E;  1NJI G; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...