5GAHN

Rnc in complex with srp with detached ng domain
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
136
structure length
136
Chain Sequence
b'MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 27
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 5gahN01
1VQLH 5HL7J 4IOCJ 3CC7H 3CCLH 4WCEJ 3CCEH 2PA2A 4WFAJ 3CC4H 1VQOH 1M90J 1WKIA 1K8AJ 1KC8J 4UY8M 1Y69K 1S72H 3CCMH 3CCQH 1YJNH 3G4SH 1NJIJ 3CCRH 3G71H 2ZJPJ 3CD6H 4IOAJ 2OTJH 1YJWH 4WFNJ 2OTLH 1K73J 1N8RJ 1VQ4H 3J7ZM 3CC2H 1K9MJ 5GADN 1YI2H 4U67J 1VQ6H 1VQKH 3PIOJ 1YITH 1VQ5H 3CMAH 5AN9F 1VQ8H 3CMEH 1Q7YJ 1Q86J 5JVHJ 5H1SO 1YIJH 1Q81J 3CCJH 3CXCH 1VQPH 1QVFH 3CCSH 1YHQH 2ZJQJ 5DM6J 5MLCO 3CCUH 1YJ9H 2ZJRJ 1QVGH 1Q82J 1VQNH 1VQ9H 1VQ7H 2QA4H 1KQSH 5GAEN 1VQMH 3I56H 1KD1J 1M1KJ 3I55H 1W2BH 3DLLJ 3CPWH 5GAGN 4IO9J 3CCVH 5DM7J 5GAHN 4WF9J 1JJ2H 2QEXH 3CF5J 3G6EH 5JVGJ 3OW2H 4WFBJ 3PIPJ
chains in the Genus database with same CATH superfamily
3C2EA 1VQLH 5HL7J 4US9A 5HUOA 4IOCJ 3CC7H 3CCLH 4WCEJ 4USAA 1FIQC 3CCEH 2W54B 1N5WB 5MPOC 2PA2A 4WFAJ 3CC4H 1FO4A 1VQOH 1M90J 1N61B 2J0FA 1WKIA 1K8AJ 1KC8J 4UY8M 1Y69K 1S72H 1N60B 2WP4A 3CCMH 3CCQH 1YJNH 2QIEA 1QPRA 3G4SH 1FM0E 1RM6A 3CCRH 1NJIJ 3G71H 2ZJPJ 4I9AA 3NVYC 4KWWA 3CD6H 4IOAJ 3L4PA 3VMMA 2OTJH 1N5XA 3B9JC 2B7PA 1YJWH 3WO0A 4WFNJ 2B7NA 1N62B 1DGJA 2OTLH 3C2OA 4GA6A 1K73J 3PAJA 1VLBA 4KWVA 4EADA 1N8RJ 1VQ4H 2I1OA 3TQVA 2I14A 1X1OA 3J7ZM 3CC2H 3NVWC 1FFUB 2W3RB 1K9MJ 5GADN 1YI2H 4U67J 4EAFA 1VQ6H 1VQKH 4X46A 2W55B 3FC4A 3PIOJ 1YITH 1VDVA 1VQ5H 3CMAH 4LHMA 3AMZA 2DSJA 3WNZA 1QAPA 4XR5A 1SB3A 1QPOA 1QPQA 5AYYA 3SR6C 3GNNA 3H5QA 5AN9F 3C2FA 3C2VA 3EUB4 1VQ8H 2OMDA 4C7YA 3CMEH 1QPNA 3C2RA 1Q7YJ 1Q86J 5EP8A 4YEKA 5JVHJ 5H1SO 4GA5A 1YIJH 3AM9A 3NVZC 1Q81J 3FAHA 2B7QA 3NRZC 1WYGA 2WK6A 3CCJH 1NVIE 1N63B 3CXCH 1YTDA 3L0GA 1NVJA 1VQPH 1QVFH 3BIIE 3CCSH 1OTPA 1ZXIB 1YHQH 2ZJQJ 3NVVC 1SIJA 3NS1C 5DM6J 5MLCO 1BRWA 3CCUH 1YJ9H 5HULA 3ETRC 2ZJRJ 1QVGH 1Q82J 1VQNH 2JBMA 1VQ9H 1VQ7H 2QA4H 1KQSH 2W3SB 1YTKA 2Q5WE 5AYXA 1FMAE 1FFVB 5GAEN 1VQMH 1JROB 1V97A 4ZOHA 3I56H 4C7ZA 1KD1J 1M1KJ 5HUPA 4C80A 3I55H 1W2BH 3DLLJ 3CPWH 5GAGN 1JRPB 3WO1A 5EY3A 2TPTA 4IO9J 1AZYA 1UOUA 5DM7J 5AYZA 4YYYA 5GAHN 4WF9J 3CCVH 1YTEA 1JJ2H 1O4UA 4GA4A 2QEXH 3CF5J 4US8A 3G6EH 5JVGJ 3OW2H 4AP8A 4WFBJ 3AN1A 3PIPJ 2WK5A 2E3TA 3RPFA
chains in the Genus database with same CATH topology
1VQLH 5HL7J 4IOCJ 3CC7H 3CCLH 4WCEJ 3CCEH 2PA2A 4WFAJ 3CC4H 1VQOH 1M90J 1WKIA 1K8AJ 1KC8J 4UY8M 1Y69K 1S72H 3CCMH 3CCQH 1YJNH 3G4SH 1NJIJ 3CCRH 3G71H 2ZJPJ 3CD6H 4IOAJ 2OTJH 1YJWH 4WFNJ 2OTLH 1K73J 1N8RJ 1VQ4H 3J7ZM 3CC2H 1K9MJ 5GADN 1YI2H 4U67J 1VQ6H 1VQKH 3PIOJ 1YITH 1VQ5H 3CMAH 5AN9F 1VQ8H 3CMEH 1Q7YJ 1Q86J 5JVHJ 5H1SO 1YIJH 1Q81J 3CCJH 3CXCH 1VQPH 1QVFH 3CCSH 1YHQH 2ZJQJ 5DM6J 5MLCO 3CCUH 1YJ9H 2ZJRJ 1QVGH 1Q82J 1VQNH 1VQ9H 1VQ7H 2QA4H 1KQSH 5GAEN 1VQMH 3I56H 1KD1J 1M1KJ 3I55H 1W2BH 3DLLJ 3CPWH 5GAGN 4IO9J 3CCVH 5DM7J 5GAHN 4WF9J 1JJ2H 2QEXH 3CF5J 3G6EH 5JVGJ 3OW2H 4WFBJ 3PIPJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQL H;  5HL7 J;  4IOC J;  3CC7 H;  3CCL H;  4WCE J;  3CCE H;  2PA2 A;  4WFA J;  3CC4 H;  1VQO H;  1M90 J;  1WKI A;  1K8A J;  1KC8 J;  4UY8 M;  1Y69 K;  1S72 H;  3CCM H;  3CCQ H;  1YJN H;  3G4S H;  1NJI J;  3CCR H;  3G71 H;  2ZJP J;  3CD6 H;  4IOA J;  2OTJ H;  1YJW H;  4WFN J;  2OTL H;  1K73 J;  1N8R J;  1VQ4 H;  3J7Z M;  3CC2 H;  1K9M J;  5GAD N;  1YI2 H;  4U67 J;  1VQ6 H;  1VQK H;  3PIO J;  1YIT H;  1VQ5 H;  3CMA H;  5AN9 F;  1VQ8 H;  3CME H;  1Q7Y J;  1Q86 J;  5JVH J;  5H1S O;  1YIJ H;  1Q81 J;  3CCJ H;  3CXC H;  1VQP H;  1QVF H;  3CCS H;  1YHQ H;  2ZJQ J;  5DM6 J;  5MLC O;  3CCU H;  1YJ9 H;  2ZJR J;  1QVG H;  1Q82 J;  1VQN H;  1VQ9 H;  1VQ7 H;  2QA4 H;  1KQS H;  5GAE N;  1VQM H;  3I56 H;  1KD1 J;  1M1K J;  3I55 H;  1W2B H;  3DLL J;  3CPW H;  5GAG N;  4IO9 J;  3CCV H;  5DM7 J;  5GAH N;  4WF9 J;  1JJ2 H;  2QEX H;  3CF5 J;  3G6E H;  5JVG J;  3OW2 H;  4WFB J;  3PIP J; 
#chains in the Genus database with same CATH topology
 3C2E A;  1VQL H;  5HL7 J;  4US9 A;  5HUO A;  4IOC J;  3CC7 H;  3CCL H;  4WCE J;  4USA A;  1FIQ C;  3CCE H;  2W54 B;  1N5W B;  5MPO C;  2PA2 A;  4WFA J;  3CC4 H;  1FO4 A;  1VQO H;  1M90 J;  1N61 B;  2J0F A;  1WKI A;  1K8A J;  1KC8 J;  4UY8 M;  1Y69 K;  1S72 H;  1N60 B;  2WP4 A;  3CCM H;  3CCQ H;  1YJN H;  2QIE A;  1QPR A;  3G4S H;  1FM0 E;  1RM6 A;  3CCR H;  1NJI J;  3G71 H;  2ZJP J;  4I9A A;  3NVY C;  4KWW A;  3CD6 H;  4IOA J;  3L4P A;  3VMM A;  2OTJ H;  1N5X A;  3B9J C;  2B7P A;  1YJW H;  3WO0 A;  4WFN J;  2B7N A;  1N62 B;  1DGJ A;  2OTL H;  3C2O A;  4GA6 A;  1K73 J;  3PAJ A;  1VLB A;  4KWV A;  4EAD A;  1N8R J;  1VQ4 H;  2I1O A;  3TQV A;  2I14 A;  1X1O A;  3J7Z M;  3CC2 H;  3NVW C;  1FFU B;  2W3R B;  1K9M J;  5GAD N;  1YI2 H;  4U67 J;  4EAF A;  1VQ6 H;  1VQK H;  4X46 A;  2W55 B;  3FC4 A;  3PIO J;  1YIT H;  1VDV A;  1VQ5 H;  3CMA H;  4LHM A;  3AMZ A;  2DSJ A;  3WNZ A;  1QAP A;  4XR5 A;  1SB3 A;  1QPO A;  1QPQ A;  5AYY A;  3SR6 C;  3GNN A;  3H5Q A;  5AN9 F;  3C2F A;  3C2V A;  3EUB 4;  1VQ8 H;  2OMD A;  4C7Y A;  3CME H;  1QPN A;  3C2R A;  1Q7Y J;  1Q86 J;  5EP8 A;  4YEK A;  5JVH J;  5H1S O;  4GA5 A;  1YIJ H;  3AM9 A;  3NVZ C;  1Q81 J;  3FAH A;  2B7Q A;  3NRZ C;  1WYG A;  2WK6 A;  3CCJ H;  1NVI E;  1N63 B;  3CXC H;  1YTD A;  3L0G A;  1NVJ A;  1VQP H;  1QVF H;  3BII E;  3CCS H;  1OTP A;  1ZXI B;  1YHQ H;  2ZJQ J;  3NVV C;  1SIJ A;  3NS1 C;  5DM6 J;  5MLC O;  1BRW A;  3CCU H;  1YJ9 H;  5HUL A;  3ETR C;  2ZJR J;  1QVG H;  1Q82 J;  1VQN H;  2JBM A;  1VQ9 H;  1VQ7 H;  2QA4 H;  1KQS H;  2W3S B;  1YTK A;  2Q5W E;  5AYX A;  1FMA E;  1FFV B;  5GAE N;  1VQM H;  1JRO B;  1V97 A;  4ZOH A;  3I56 H;  4C7Z A;  1KD1 J;  1M1K J;  5HUP A;  4C80 A;  3I55 H;  1W2B H;  3DLL J;  3CPW H;  5GAG N;  1JRP B;  3WO1 A;  5EY3 A;  2TPT A;  4IO9 J;  1AZY A;  1UOU A;  5DM7 J;  5AYZ A;  4YYY A;  5GAH N;  4WF9 J;  3CCV H;  1YTE A;  1JJ2 H;  1O4U A;  4GA4 A;  2QEX H;  3CF5 J;  4US8 A;  3G6E H;  5JVG J;  3OW2 H;  4AP8 A;  4WFB J;  3AN1 A;  3PIP J;  2WK5 A;  2E3T A;  3RPF A; 
#chains in the Genus database with same CATH homology
 1VQL H;  5HL7 J;  4IOC J;  3CC7 H;  3CCL H;  4WCE J;  3CCE H;  2PA2 A;  4WFA J;  3CC4 H;  1VQO H;  1M90 J;  1WKI A;  1K8A J;  1KC8 J;  4UY8 M;  1Y69 K;  1S72 H;  3CCM H;  3CCQ H;  1YJN H;  3G4S H;  1NJI J;  3CCR H;  3G71 H;  2ZJP J;  3CD6 H;  4IOA J;  2OTJ H;  1YJW H;  4WFN J;  2OTL H;  1K73 J;  1N8R J;  1VQ4 H;  3J7Z M;  3CC2 H;  1K9M J;  5GAD N;  1YI2 H;  4U67 J;  1VQ6 H;  1VQK H;  3PIO J;  1YIT H;  1VQ5 H;  3CMA H;  5AN9 F;  1VQ8 H;  3CME H;  1Q7Y J;  1Q86 J;  5JVH J;  5H1S O;  1YIJ H;  1Q81 J;  3CCJ H;  3CXC H;  1VQP H;  1QVF H;  3CCS H;  1YHQ H;  2ZJQ J;  5DM6 J;  5MLC O;  3CCU H;  1YJ9 H;  2ZJR J;  1QVG H;  1Q82 J;  1VQN H;  1VQ9 H;  1VQ7 H;  2QA4 H;  1KQS H;  5GAE N;  1VQM H;  3I56 H;  1KD1 J;  1M1K J;  3I55 H;  1W2B H;  3DLL J;  3CPW H;  5GAG N;  4IO9 J;  3CCV H;  5DM7 J;  5GAH N;  4WF9 J;  1JJ2 H;  2QEX H;  3CF5 J;  3G6E H;  5JVG J;  3OW2 H;  4WFB J;  3PIP J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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