5GAHN

Rnc in complex with srp with detached ng domain
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
136
structure length
136
Chain Sequence
MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule keywords SRP 4.5S RNA
total genus 27
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 5gahN01
1KC8J 4WFBJ 2OTJH 1YIJH 3J7ZM 5DM6J 3OW2H 3PIOJ 1S72H 5DM7J 1KQSH 5GADN 1M1KJ 1KD1J 5GAGN 3CCRH 4IOCJ 3CCSH 1YHQH 3CCJH 1VQ7H 1YI2H 3G71H 1M90J 4IO9J 1K8AJ 1VQ5H 3PIPJ 1VQ8H 3CPWH 3CC4H 1K73J 1Q86J 2PA2A 3CCMH 1VQ9H 1JJ2H 1WKIA 3G6EH 3CCUH 3DLLJ 5H1SO 1K9MJ 3G4SH 3I55H 2ZJPJ 1VQOH 5AN9F 1YJNH 1QVFH 3CMEH 1Q7YJ 3CCEH 4WFAJ 5MLCO 2QEXH 5HL7J 3I56H 5JVGJ 1VQKH 4WF9J 1VQNH 4U67J 3CMAH 1NJIJ 5GAEN 1YJ9H 3CCQH 1VQ4H 3CC7H 1YITH 2ZJQJ 1Q81J 1QVGH 3CXCH 3CCVH 1Q82J 1Y69K 3CCLH 2OTLH 5JVHJ 1VQPH 1VQMH 3CD6H 3CF5J 1N8RJ 3CC2H 4IOAJ 1W2BH 1VQLH 4WCEJ 1VQ6H 5GAHN 2ZJRJ 4UY8M 2QA4H 1YJWH 4WFNJ
chains in the Genus database with same CATH superfamily
3NRZC 2DSJA 1KC8J 4WFBJ 2OTJH 2J0FA 1YIJH 3EUB4 4US9A 4AP8A 4USAA 4KWVA 3J7ZM 1AZYA 3C2VA 3VMMA 5DM6J 3OW2H 3ETRC 1RM6A 3NVYC 3PIOJ 3NVZC 5AYZA 1S72H 5DM7J 3NVWC 1SIJA 1KQSH 5GADN 1M1KJ 1KD1J 5GAGN 3CCRH 4IOCJ 3CCSH 1O4UA 2WK6A 4ZOHA 1YTDA 3SR6C 1YHQH 3CCJH 1VQ7H 1FM0E 4XR5A 3C2FA 1YTKA 1YI2H 3G71H 1WYGA 1BRWA 1M90J 4IO9J 1N62B 2B7NA 2TPTA 1K8AJ 1QAPA 1NVIE 1VQ5H 1N5WB 3PIPJ 1JRPB 1VQ8H 5EY3A 2W3SB 4I9AA 2I14A 3CPWH 4EAFA 1N60B 3CC4H 3C2OA 3H5QA 1K73J 1Q86J 2W3RB 2W55B 1YTEA 1FFVB 2PA2A 3CCMH 4GA4A 1VQ9H 1ZXIB 5AYYA 2OMDA 4GA6A 3C2EA 1JJ2H 1WKIA 3G6EH 3CCUH 3DLLJ 1N61B 5HUPA 4YYYA 5MPOC 5H1SO 1UOUA 1K9MJ 1FFUB 3G4SH 3I55H 2B7QA 2ZJPJ 1VQOH 3NS1C 4C7YA 2Q5WE 3FC4A 1QPNA 5AYXA 2I1OA 5AN9F 3WO0A 1FMAE 3L4PA 3TQVA 1YJNH 1QVFH 3AMZA 3CMEH 1Q7YJ 1FIQC 1FO4A 2QIEA 3RPFA 1VDVA 3CCEH 4US8A 4WFAJ 2WP4A 5MLCO 2QEXH 3AN1A 5HL7J 3I56H 1OTPA 5JVGJ 4GA5A 1VQKH 1V97A 3FAHA 4WF9J 3PAJA 1VQNH 4YEKA 4U67J 1N63B 3CMAH 1NJIJ 1VLBA 5GAEN 5HUOA 3AM9A 3CCQH 1YJ9H 3WNZA 1VQ4H 3CC7H 1YITH 3GNNA 2ZJQJ 3C2RA 2JBMA 1SB3A 1Q81J 1QPRA 3WO1A 3L0GA 1QVGH 3CXCH 3CCVH 1Q82J 1N5XA 1Y69K 4EADA 2E3TA 3CCLH 2OTLH 5JVHJ 1VQPH 1VQMH 3CD6H 3CF5J 1DGJA 1N8RJ 1QPQA 4KWWA 2W54B 3NVVC 4X46A 3CC2H 3B9JC 1X1OA 4LHMA 4IOAJ 1NVJA 2B7PA 4C80A 1W2BH 1VQLH 1JROB 2WK5A 4C7ZA 4WCEJ 5GAHN 1VQ6H 2ZJRJ 5EP8A 4UY8M 3BIIE 2QA4H 5HULA 1YJWH 4WFNJ 1QPOA
chains in the Genus database with same CATH topology
1KC8J 4WFBJ 2OTJH 1YIJH 3J7ZM 5DM6J 3OW2H 3PIOJ 1S72H 5DM7J 1KQSH 5GADN 1M1KJ 1KD1J 5GAGN 3CCRH 4IOCJ 3CCSH 1YHQH 3CCJH 1VQ7H 1YI2H 3G71H 1M90J 4IO9J 1K8AJ 1VQ5H 3PIPJ 1VQ8H 3CPWH 3CC4H 1K73J 1Q86J 2PA2A 3CCMH 1VQ9H 1JJ2H 1WKIA 3G6EH 3CCUH 3DLLJ 5H1SO 1K9MJ 3G4SH 3I55H 2ZJPJ 1VQOH 5AN9F 1YJNH 1QVFH 3CMEH 1Q7YJ 3CCEH 4WFAJ 5MLCO 2QEXH 5HL7J 3I56H 5JVGJ 1VQKH 4WF9J 1VQNH 4U67J 3CMAH 1NJIJ 5GAEN 1YJ9H 3CCQH 1VQ4H 3CC7H 1YITH 2ZJQJ 1Q81J 1QVGH 3CXCH 3CCVH 1Q82J 1Y69K 3CCLH 2OTLH 5JVHJ 1VQPH 1VQMH 3CD6H 3CF5J 1N8RJ 3CC2H 4IOAJ 1W2BH 1VQLH 4WCEJ 1VQ6H 5GAHN 2ZJRJ 4UY8M 2QA4H 1YJWH 4WFNJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KC8 J;  4WFB J;  2OTJ H;  1YIJ H;  3J7Z M;  5DM6 J;  3OW2 H;  3PIO J;  1S72 H;  5DM7 J;  1KQS H;  5GAD N;  1M1K J;  1KD1 J;  5GAG N;  3CCR H;  4IOC J;  3CCS H;  1YHQ H;  3CCJ H;  1VQ7 H;  1YI2 H;  3G71 H;  1M90 J;  4IO9 J;  1K8A J;  1VQ5 H;  3PIP J;  1VQ8 H;  3CPW H;  3CC4 H;  1K73 J;  1Q86 J;  2PA2 A;  3CCM H;  1VQ9 H;  1JJ2 H;  1WKI A;  3G6E H;  3CCU H;  3DLL J;  5H1S O;  1K9M J;  3G4S H;  3I55 H;  2ZJP J;  1VQO H;  5AN9 F;  1YJN H;  1QVF H;  3CME H;  1Q7Y J;  3CCE H;  4WFA J;  5MLC O;  2QEX H;  5HL7 J;  3I56 H;  5JVG J;  1VQK H;  4WF9 J;  1VQN H;  4U67 J;  3CMA H;  1NJI J;  5GAE N;  1YJ9 H;  3CCQ H;  1VQ4 H;  3CC7 H;  1YIT H;  2ZJQ J;  1Q81 J;  1QVG H;  3CXC H;  3CCV H;  1Q82 J;  1Y69 K;  3CCL H;  2OTL H;  5JVH J;  1VQP H;  1VQM H;  3CD6 H;  3CF5 J;  1N8R J;  3CC2 H;  4IOA J;  1W2B H;  1VQL H;  4WCE J;  1VQ6 H;  5GAH N;  2ZJR J;  4UY8 M;  2QA4 H;  1YJW H;  4WFN J; 
#chains in the Genus database with same CATH topology
 3NRZ C;  2DSJ A;  1KC8 J;  4WFB J;  2OTJ H;  2J0F A;  1YIJ H;  3EUB 4;  4US9 A;  4AP8 A;  4USA A;  4KWV A;  3J7Z M;  1AZY A;  3C2V A;  3VMM A;  5DM6 J;  3OW2 H;  3ETR C;  1RM6 A;  3NVY C;  3PIO J;  3NVZ C;  5AYZ A;  1S72 H;  5DM7 J;  3NVW C;  1SIJ A;  1KQS H;  5GAD N;  1M1K J;  1KD1 J;  5GAG N;  3CCR H;  4IOC J;  3CCS H;  1O4U A;  2WK6 A;  4ZOH A;  1YTD A;  3SR6 C;  1YHQ H;  3CCJ H;  1VQ7 H;  1FM0 E;  4XR5 A;  3C2F A;  1YTK A;  1YI2 H;  3G71 H;  1WYG A;  1BRW A;  1M90 J;  4IO9 J;  1N62 B;  2B7N A;  2TPT A;  1K8A J;  1QAP A;  1NVI E;  1VQ5 H;  1N5W B;  3PIP J;  1JRP B;  1VQ8 H;  5EY3 A;  2W3S B;  4I9A A;  2I14 A;  3CPW H;  4EAF A;  1N60 B;  3CC4 H;  3C2O A;  3H5Q A;  1K73 J;  1Q86 J;  2W3R B;  2W55 B;  1YTE A;  1FFV B;  2PA2 A;  3CCM H;  4GA4 A;  1VQ9 H;  1ZXI B;  5AYY A;  2OMD A;  4GA6 A;  3C2E A;  1JJ2 H;  1WKI A;  3G6E H;  3CCU H;  3DLL J;  1N61 B;  5HUP A;  4YYY A;  5MPO C;  5H1S O;  1UOU A;  1K9M J;  1FFU B;  3G4S H;  3I55 H;  2B7Q A;  2ZJP J;  1VQO H;  3NS1 C;  4C7Y A;  2Q5W E;  3FC4 A;  1QPN A;  5AYX A;  2I1O A;  5AN9 F;  3WO0 A;  1FMA E;  3L4P A;  3TQV A;  1YJN H;  1QVF H;  3AMZ A;  3CME H;  1Q7Y J;  1FIQ C;  1FO4 A;  2QIE A;  3RPF A;  1VDV A;  3CCE H;  4US8 A;  4WFA J;  2WP4 A;  5MLC O;  2QEX H;  3AN1 A;  5HL7 J;  3I56 H;  1OTP A;  5JVG J;  4GA5 A;  1VQK H;  1V97 A;  3FAH A;  4WF9 J;  3PAJ A;  1VQN H;  4YEK A;  4U67 J;  1N63 B;  3CMA H;  1NJI J;  1VLB A;  5GAE N;  5HUO A;  3AM9 A;  3CCQ H;  1YJ9 H;  3WNZ A;  1VQ4 H;  3CC7 H;  1YIT H;  3GNN A;  2ZJQ J;  3C2R A;  2JBM A;  1SB3 A;  1Q81 J;  1QPR A;  3WO1 A;  3L0G A;  1QVG H;  3CXC H;  3CCV H;  1Q82 J;  1N5X A;  1Y69 K;  4EAD A;  2E3T A;  3CCL H;  2OTL H;  5JVH J;  1VQP H;  1VQM H;  3CD6 H;  3CF5 J;  1DGJ A;  1N8R J;  1QPQ A;  4KWW A;  2W54 B;  3NVV C;  4X46 A;  3CC2 H;  3B9J C;  1X1O A;  4LHM A;  4IOA J;  1NVJ A;  2B7P A;  4C80 A;  1W2B H;  1VQL H;  1JRO B;  2WK5 A;  4C7Z A;  4WCE J;  5GAH N;  1VQ6 H;  2ZJR J;  5EP8 A;  4UY8 M;  3BII E;  2QA4 H;  5HUL A;  1YJW H;  4WFN J;  1QPO A; 
#chains in the Genus database with same CATH homology
 1KC8 J;  4WFB J;  2OTJ H;  1YIJ H;  3J7Z M;  5DM6 J;  3OW2 H;  3PIO J;  1S72 H;  5DM7 J;  1KQS H;  5GAD N;  1M1K J;  1KD1 J;  5GAG N;  3CCR H;  4IOC J;  3CCS H;  1YHQ H;  3CCJ H;  1VQ7 H;  1YI2 H;  3G71 H;  1M90 J;  4IO9 J;  1K8A J;  1VQ5 H;  3PIP J;  1VQ8 H;  3CPW H;  3CC4 H;  1K73 J;  1Q86 J;  2PA2 A;  3CCM H;  1VQ9 H;  1JJ2 H;  1WKI A;  3G6E H;  3CCU H;  3DLL J;  5H1S O;  1K9M J;  3G4S H;  3I55 H;  2ZJP J;  1VQO H;  5AN9 F;  1YJN H;  1QVF H;  3CME H;  1Q7Y J;  3CCE H;  4WFA J;  5MLC O;  2QEX H;  5HL7 J;  3I56 H;  5JVG J;  1VQK H;  4WF9 J;  1VQN H;  4U67 J;  3CMA H;  1NJI J;  5GAE N;  1YJ9 H;  3CCQ H;  1VQ4 H;  3CC7 H;  1YIT H;  2ZJQ J;  1Q81 J;  1QVG H;  3CXC H;  3CCV H;  1Q82 J;  1Y69 K;  3CCL H;  2OTL H;  5JVH J;  1VQP H;  1VQM H;  3CD6 H;  3CF5 J;  1N8R J;  3CC2 H;  4IOA J;  1W2B H;  1VQL H;  4WCE J;  1VQ6 H;  5GAH N;  2ZJR J;  4UY8 M;  2QA4 H;  1YJW H;  4WFN J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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