5GAHa

Rnc in complex with srp with detached ng domain
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
58
structure length
58
Chain Sequence
AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords SRP 4.5S RNA
total genus 15
structure length 58
sequence length 58
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
a PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 5gaha00
1VQ8W 1W2BV 3CF5W 5GAGa 1NJIX 1BXYA 4U67W 5GAHa 4WFBW 5JVHW 4UY8Z 1QVFV 1KD1X 1VQLW 3CCSW 3CMAW 1VQ6W 3CC4W 3G6EW 3CCUW 1JJ2V 5GAEa 1VQ7W 3CCQW 1K73X 1VQNW 3CCJW 3I55W 3I56W 1VQKW 1YHQW 2QEXW 1K8AX 4WCEW 4WFNW 1QVGV 1S72W 1N8RX 2ZJQW 1YITW 1Q82X 4WFAW 2QA4W 1VQMW 1VQ9W 3CXCV 1Q86X 3CPWV 1YIJW 5JVGW 3DLLW 3CCMW 3G4SW 3CC2W 1KQSV 3G71W 1YJNW 1VQOW 3PIPW 2ZJPW 3PIOW 3CCVW 1YJ9W 5HL7W 1M90X 4IOAW 3CCLW 1Q7YX 3CCEW 4WF9W 5GADa 1M1KX 4IO9W 4IOCW 3CD6W 5DM6W 3OW2V 2OTLW 1YJWW 3J7ZZ 2OTJW 1VQ5W 1VQ4W 3CMEW 1YI2W 2ZJRW 1Q81X 5DM7W 1VQPW 1KC8X 3CCRW 3CC7W 1K9MX
chains in the Genus database with same CATH superfamily
1VQ8W 1R6QC 1W2BV 1MWTA 3GW1A 5GAGa 3CF5W 1NJIX 5M19A 1VQQA 1BXYA 1MWRA 4U67W 5GAHa 3W7XA 3O2HA 4WFBW 1MBVB 3O1FB 1R6OC 3W7TA 5JVHW 4UY8Z 1QVFV 1KD1X 1VQLW 5M18A 1DD3A 4CJNA 1LZWA 3CCSW 3CMAW 1VQ6W 3CC4W 3G6EW 3CCUW 1MWUA 1JJ2V 5GAEa 1VQ7W 3CCQW 1K73X 1VQNW 3CCJW 1RQSA 1MWSA 3I55W 3I56W 1VQKW 1YHQW 2QEXW 4BL2A 3O1FA 1K8AX 4WCEW 4WFNW 1QVGV 1MBUC 3ZG0A 1S72W 1N8RX 1MBXC 2ZJQW 1YITW 4CPKA 4YKAA 1Q82X 4WFAW 2W9RA 1RQVA 2QA4W 1VQMW 1MG9A 1VQ9W 3G3PA 3CXCV 1Q86X 3CPWV 1YIJW 3GQ0A 5JVGW 3DLLW 3CCMW 3G4SW 3CC2W 1KQSV 3GQ1A 3G71W 3W7UA 1VQOW 1YJNW 3PIPW 3O2BA 2ZJPW 3PIOW 3CCVW 3W7SA 1YJ9W 5HL7W 4DKIA 4YJMA 1M90X 3CCLW 4IOAW 1Q7YX 3CCEW 4WF9W 4YJXA 5GADa 1M1KX 4BL3A 3D3IA 2WA9A 3G19A 4IO9W 1DD4A 4IOCW 3CD6W 5DM6W 5M1AA 3O2OA 3OW2V 3G1BA 3ZG5A 2OTLW 1YJWW 2WA8A 3J7ZZ 3DNJA 2OTJW 1VQ5W 3ZFZA 1VQ4W 5GW7A 1RQUA 3CMEW 3W7WA 1YI2W 5CA3A 2ZJRW 1Q81X 5DM7W 1VQPW 1KC8X 3CCRW 3CC7W 1CTFA 1K9MX
chains in the Genus database with same CATH topology
1VQ8W 1W2BV 3CF5W 5GAGa 1NJIX 1BXYA 4U67W 5GAHa 4WFBW 5JVHW 4UY8Z 1QVFV 1KD1X 1VQLW 3CCSW 3CMAW 1VQ6W 3CC4W 3G6EW 3CCUW 1JJ2V 5GAEa 1VQ7W 3CCQW 1K73X 1VQNW 3CCJW 3I55W 3I56W 1VQKW 1YHQW 2QEXW 1K8AX 4WCEW 4WFNW 1QVGV 1S72W 1N8RX 2ZJQW 1YITW 1Q82X 4WFAW 2QA4W 1VQMW 1VQ9W 3CXCV 1Q86X 3CPWV 1YIJW 5JVGW 3DLLW 3CCMW 3G4SW 3CC2W 1KQSV 3G71W 1YJNW 1VQOW 3PIPW 2ZJPW 3PIOW 3CCVW 1YJ9W 5HL7W 1M90X 4IOAW 3CCLW 1Q7YX 3CCEW 4WF9W 5GADa 1M1KX 4IO9W 4IOCW 3CD6W 5DM6W 3OW2V 2OTLW 1YJWW 3J7ZZ 2OTJW 1VQ5W 1VQ4W 3CMEW 1YI2W 2ZJRW 1Q81X 5DM7W 1VQPW 1KC8X 3CCRW 3CC7W 1K9MX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQ8 W;  1W2B V;  3CF5 W;  5GAG a;  1NJI X;  1BXY A;  4U67 W;  5GAH a;  4WFB W;  5JVH W;  4UY8 Z;  1QVF V;  1KD1 X;  1VQL W;  3CCS W;  3CMA W;  1VQ6 W;  3CC4 W;  3G6E W;  3CCU W;  1JJ2 V;  5GAE a;  1VQ7 W;  3CCQ W;  1K73 X;  1VQN W;  3CCJ W;  3I55 W;  3I56 W;  1VQK W;  1YHQ W;  2QEX W;  1K8A X;  4WCE W;  4WFN W;  1QVG V;  1S72 W;  1N8R X;  2ZJQ W;  1YIT W;  1Q82 X;  4WFA W;  2QA4 W;  1VQM W;  1VQ9 W;  3CXC V;  1Q86 X;  3CPW V;  1YIJ W;  5JVG W;  3DLL W;  3CCM W;  3G4S W;  3CC2 W;  1KQS V;  3G71 W;  1YJN W;  1VQO W;  3PIP W;  2ZJP W;  3PIO W;  3CCV W;  1YJ9 W;  5HL7 W;  1M90 X;  4IOA W;  3CCL W;  1Q7Y X;  3CCE W;  4WF9 W;  5GAD a;  1M1K X;  4IO9 W;  4IOC W;  3CD6 W;  5DM6 W;  3OW2 V;  2OTL W;  1YJW W;  3J7Z Z;  2OTJ W;  1VQ5 W;  1VQ4 W;  3CME W;  1YI2 W;  2ZJR W;  1Q81 X;  5DM7 W;  1VQP W;  1KC8 X;  3CCR W;  3CC7 W;  1K9M X; 
#chains in the Genus database with same CATH topology
 1VQ8 W;  1R6Q C;  1W2B V;  1MWT A;  3GW1 A;  5GAG a;  3CF5 W;  1NJI X;  5M19 A;  1VQQ A;  1BXY A;  1MWR A;  4U67 W;  5GAH a;  3W7X A;  3O2H A;  4WFB W;  1MBV B;  3O1F B;  1R6O C;  3W7T A;  5JVH W;  4UY8 Z;  1QVF V;  1KD1 X;  1VQL W;  5M18 A;  1DD3 A;  4CJN A;  1LZW A;  3CCS W;  3CMA W;  1VQ6 W;  3CC4 W;  3G6E W;  3CCU W;  1MWU A;  1JJ2 V;  5GAE a;  1VQ7 W;  3CCQ W;  1K73 X;  1VQN W;  3CCJ W;  1RQS A;  1MWS A;  3I55 W;  3I56 W;  1VQK W;  1YHQ W;  2QEX W;  4BL2 A;  3O1F A;  1K8A X;  4WCE W;  4WFN W;  1QVG V;  1MBU C;  3ZG0 A;  1S72 W;  1N8R X;  1MBX C;  2ZJQ W;  1YIT W;  4CPK A;  4YKA A;  1Q82 X;  4WFA W;  2W9R A;  1RQV A;  2QA4 W;  1VQM W;  1MG9 A;  1VQ9 W;  3G3P A;  3CXC V;  1Q86 X;  3CPW V;  1YIJ W;  3GQ0 A;  5JVG W;  3DLL W;  3CCM W;  3G4S W;  3CC2 W;  1KQS V;  3GQ1 A;  3G71 W;  3W7U A;  1VQO W;  1YJN W;  3PIP W;  3O2B A;  2ZJP W;  3PIO W;  3CCV W;  3W7S A;  1YJ9 W;  5HL7 W;  4DKI A;  4YJM A;  1M90 X;  3CCL W;  4IOA W;  1Q7Y X;  3CCE W;  4WF9 W;  4YJX A;  5GAD a;  1M1K X;  4BL3 A;  3D3I A;  2WA9 A;  3G19 A;  4IO9 W;  1DD4 A;  4IOC W;  3CD6 W;  5DM6 W;  5M1A A;  3O2O A;  3OW2 V;  3G1B A;  3ZG5 A;  2OTL W;  1YJW W;  2WA8 A;  3J7Z Z;  3DNJ A;  2OTJ W;  1VQ5 W;  3ZFZ A;  1VQ4 W;  5GW7 A;  1RQU A;  3CME W;  3W7W A;  1YI2 W;  5CA3 A;  2ZJR W;  1Q81 X;  5DM7 W;  1VQP W;  1KC8 X;  3CCR W;  3CC7 W;  1CTF A;  1K9M X; 
#chains in the Genus database with same CATH homology
 1VQ8 W;  1W2B V;  3CF5 W;  5GAG a;  1NJI X;  1BXY A;  4U67 W;  5GAH a;  4WFB W;  5JVH W;  4UY8 Z;  1QVF V;  1KD1 X;  1VQL W;  3CCS W;  3CMA W;  1VQ6 W;  3CC4 W;  3G6E W;  3CCU W;  1JJ2 V;  5GAE a;  1VQ7 W;  3CCQ W;  1K73 X;  1VQN W;  3CCJ W;  3I55 W;  3I56 W;  1VQK W;  1YHQ W;  2QEX W;  1K8A X;  4WCE W;  4WFN W;  1QVG V;  1S72 W;  1N8R X;  2ZJQ W;  1YIT W;  1Q82 X;  4WFA W;  2QA4 W;  1VQM W;  1VQ9 W;  3CXC V;  1Q86 X;  3CPW V;  1YIJ W;  5JVG W;  3DLL W;  3CCM W;  3G4S W;  3CC2 W;  1KQS V;  3G71 W;  1YJN W;  1VQO W;  3PIP W;  2ZJP W;  3PIO W;  3CCV W;  1YJ9 W;  5HL7 W;  1M90 X;  4IOA W;  3CCL W;  1Q7Y X;  3CCE W;  4WF9 W;  5GAD a;  1M1K X;  4IO9 W;  4IOC W;  3CD6 W;  5DM6 W;  3OW2 V;  2OTL W;  1YJW W;  3J7Z Z;  2OTJ W;  1VQ5 W;  1VQ4 W;  3CME W;  1YI2 W;  2ZJR W;  1Q81 X;  5DM7 W;  1VQP W;  1KC8 X;  3CCR W;  3CC7 W;  1K9M X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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