5GAHc

Rnc in complex with srp with detached ng domain
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
51
structure length
51
Chain Sequence
GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 6
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
c PF00471 Ribosomal_L33 Ribosomal protein L33
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.120 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 5gahc00
5GAHc 5GAEc 5GADc 5DM71 5GAGc 3J7Z1 5JVH1 4UY81 4WFN1 5JVG1 4U671 4V196 5DM61 5H1Sc 3PIP1 5MLC3 3PIO1 3J7Y1
chains in the Genus database with same CATH superfamily
3HAXC 1E8JA 1LTLA 5C4XL 2A6HD 2XJUA 4Y7NL 1WCML 5IP7L 5DM61 1WJVA 2V0EA 4AYBP 2XJQA 3JR7A 3I4ML 3KYUA 1P7PA 1SMUA 2APOB 3NFPI 5MGNA 1NNQA 1RYQA 5AI2A 3MPSA 2A69D 5MFZA 5GAGc 3VPBE 3GTOL 4BY1L 2PVEA 2XJVA 2AUSB 5M3ML 1CADA 2NVXL 4Y52L 4QIWP 5M5WL 2VUML 4AHWA 3FKIL 5GAEc 2HVYC 3ZG6A 3S1ML 3PO2L 2WB1P 3S2HL 5IP9L 4A93L 1B2OA 3FDJA 1QQTA 3LNLA 2M6OA 1T9PA 3S1QL 2M4VA 4YWLA 4ME3A 1SFOL 4A3KL 2L0ZA 4AHYA 2V3BB 3HOZL 5GAHc 5M5YL 1OWBA 5EIOC 1RDGA 4V196 1S2ZA 3KYVA 3PIO1 2GMGA 1IU6A 2CKAA 1YUZA 2Z3RB 3LWPB 5IYCL 2B5ID 4A3EL 3QQCE 3I4NL 1T9OA 2JA8L 3GTLL 3HOVL 3HJWB 5IY0A 1YUXA 5C3EL 4E6YA 2Z3QB 3GTPL 4AI2A 4AI3A 5FLML 7RXNA 3GTML 5FJ8L 1TWAL 3H9BA 2ERJA 5MF6A 8RXNA 2R92L 1K83L 2JA7L 1DX8A 1QYBA 2E2HL 1JYBA 1LKMA 2M6PA 4LHNA 2Y0SP 5DM71 2XJSA 1S30A 3KYYA 4LHLA 2J9UB 3M4OL 3PZAA 3S15L 1RB9A 3HKZP 4XGHA 4G6BA 1PZXA 4AHXA 1NXGA 1SMWA 4BBSL 3H3VM 4UY81 1BRFA 3CQZL 1PFVA 3IU3I 2PYAA 2QL0A 4BBRL 2DSXA 1I6HL 1NXEA 1YV1A 3MQKB 3LWQB 3LWRB 1ZRPA 2RDVA 2PSMC 5K2ME 1B71A 4C3IL 5M5XL 4YWMA 1RDVA 1TWGL 2XJRA 4ZN1B 2VL6A 4B8CD 5C44L 4POGA 3GTJL 1IW7D 1LKPA 4TPUA 4BY7L 1FHHA 1S24A 2KKDA 3PKIA 2HR5A 3B0AB 4A3LL 2EY4E 5MFPA 1Y1VL 3LPEB 4AR3A 3MSUA 3PIP1 4JAGA 4A3ML 4A3IL 2NYDA 2PVXA 1YK4A 1R0IA 3GTQL 3J7Z1 1BQ9A 3HOXL 3RZOL 1B13A 1CAAA 4JAFA 1IROA 3LWOB 3K35A 5JVH1 2ERSA 2ZIXA 2LCQA 4WFN1 2RFKB 5M3FL 2H12A 5AN9H 1BQ8A 1R0GA 2NVTL 1C09A 1TWCL 2NVQL 1IU5A 4A3CL 3P8BA 3QVDA 3K7AL 3GTKL 3HJYB 4AHZA 3RYGA 5C4JL 3PO3L 4X6AL 5JVG1 4A3GL 3KYXA 3S17L 1OWCA 1LKOA 5H1Sc 1IRNA 3J7Y1 5GADc 1R9TL 3H0GL 4A3JL 1PFWA 4AR5A 3S1NL 3S14L 1VZGA 3PKJA 3HOUL 2M4YA 3P2AA 4GS7D 4ZN3B 3KYWA 2A6ED 4TVMA 5IYBL 4AR6A 1R0HA 1VCXA 1PFYA 1QCVA 4POFA 2KN9A 2V0FA 3RZDL 2A68D 2MS3A 4C3JL 2E2IL 2JI3A 2JI1A 1RWDA 4A3FL 4A3DL 3A44A 3SS2A 5RXNA 2PPTA 2XJPA 4JAEA 1DVBA 3PL5A 3PWFA 3H9CA 2PMZP 2R7ZL 5EINC 1TWFL 3S16L 3RZTA 4AR4A 2AQCA 5IYDL 2CKCA 2B63L 3M3YL 4RXNA 3GTGL 3HOWL 1T9QA 4AI0A 1FHMA 3WWLA 1YK5A 2JI2A 1PFUA 1ODHA 3H97A 4K9FA 4AI1A 1TWHL 2O5JD 1Z92B 1VZHA 3RZ6A 3S1RL 2WAQP 2K2DA 2JA6L 3HOYL 2C6AA 1I50L 6RXNA 1R0FA 1SMMA 5MLC3 4C2M1 1F4LA 3WWNB 4XXBB 3H99A 2CR8A 2NVYL 1R0JA 1I3QL 2AYJA 1RYTA 4A3BL 2XJTA 3B08B 1BFYA 2E2JL 1VZIA 4C3HL 4JADA 4BXXL 3LWVB 1BE7A 4U671 1B2JA 1H7VA 2R93L 2C6BA 2BE5D 3S2DL 2JA5L 2YU9L 1Y1WL 5AI3A
chains in the Genus database with same CATH topology
1T9OA 1E8JA 3A44A 1LTLA 2A6HD 2XJUA 5IY0A 5DM61 3B0AB 1YUXA 3SS2A 1WJVA 5RXNA 5MFPA 2PPTA 4E6YA 3LPEB 2XJPA 4JAEA 3MSUA 4AR3A 3PIP1 2V0EA 4JAGA 2XJQA 2Z3QB 2NYDA 4AI2A 2PVXA 1YK4A 4AI3A 7RXNA 1DVBA 3KYUA 1R0IA 2ERJA 3PWFA 5MF6A 3J7Z1 1BQ9A 8RXNA 1SMUA 3NFPI 5MGNA 1B13A 5EINC 1CAAA 4JAFA 1IROA 3RZTA 1NNQA 1RYQA 4AR4A 1DX8A 3K35A 5AI2A 3MPSA 2CKCA 5JVH1 1QYBA 2A69D 4RXNA 5MFZA 5GAGc 1JYBA 3VPBE 1T9QA 1LKMA 2M6PA 4LHNA 4AI0A 1FHMA 3WWLA 2ERSA 1YK5A 2ZIXA 2LCQA 2PVEA 5DM71 2XJSA 1S30A 2JI2A 3KYYA 2XJVA 4LHLA 2J9UB 4WFN1 2H12A 3PZAA 1ODHA 1CADA 4K9FA 5AN9H 4AI1A 1BQ8A 2O5JD 1R0GA 1RB9A 1C09A 1Z92B 1VZHA 4AHWA 1IU5A 3RZ6A 5GAEc 4XGHA 4G6BA 3P8BA 2K2DA 4AHXA 3ZG6A 1NXGA 3QVDA 1SMWA 4AHZA 3RYGA 2C6AA 1BRFA 4UY81 3IU3I 2PYAA 1R0FA 1SMMA 2QL0A 6RXNA 5JVG1 1B2OA 5MLC3 2DSXA 3KYXA 1NXEA 1YV1A 3WWNB 1OWCA 1LKOA 2M6OA 3LNLA 4XXBB 1T9PA 5H1Sc 1IRNA 3J7Y1 5GADc 2M4VA 4YWLA 2CR8A 4ME3A 1R0JA 2AYJA 1RYTA 4AR5A 2L0ZA 1VZGA 4AHYA 2V3BB 3PKJA 1ZRPA 2M4YA 3P2AA 2XJTA 2RDVA 3B08B 5GAHc 4GS7D 1OWBA 4ZN3B 3KYWA 1VZIA 1BFYA 4JADA 2PSMC 5EIOC 5K2ME 1RDGA 2A6ED 4TVMA 4AR6A 1B71A 1BE7A 4U671 4V196 1S2ZA 3KYVA 1B2JA 3PIO1 1H7VA 2GMGA 1VCXA 1R0HA 1IU6A 1RDVA 4YWMA 1QCVA 2CKAA 4POFA 2XJRA 2C6BA 4ZN1B 2VL6A 2KN9A 2V0FA 2BE5D 4B8CD 1YUZA 4POGA 1IW7D 1LKPA 4TPUA 2Z3RB 2A68D 2MS3A 1FHHA 1S24A 2KKDA 3PKIA 2JI3A 2HR5A 2B5ID 2JI1A 5AI3A 1RWDA 3QQCE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAH c;  5GAE c;  5GAD c;  5DM7 1;  5GAG c;  3J7Z 1;  5JVH 1;  4UY8 1;  4WFN 1;  5JVG 1;  4U67 1;  4V19 6;  5DM6 1;  5H1S c;  3PIP 1;  5MLC 3;  3PIO 1;  3J7Y 1; 
#chains in the Genus database with same CATH topology
 3HAX C;  1E8J A;  1LTL A;  5C4X L;  2A6H D;  2XJU A;  4Y7N L;  1WCM L;  5IP7 L;  5DM6 1;  1WJV A;  2V0E A;  4AYB P;  2XJQ A;  3JR7 A;  3I4M L;  3KYU A;  1P7P A;  1SMU A;  2APO B;  3NFP I;  5MGN A;  1NNQ A;  1RYQ A;  5AI2 A;  3MPS A;  2A69 D;  5MFZ A;  5GAG c;  3VPB E;  3GTO L;  4BY1 L;  2PVE A;  2XJV A;  2AUS B;  5M3M L;  1CAD A;  2NVX L;  4Y52 L;  4QIW P;  5M5W L;  2VUM L;  4AHW A;  3FKI L;  5GAE c;  2HVY C;  3ZG6 A;  3S1M L;  3PO2 L;  2WB1 P;  3S2H L;  5IP9 L;  4A93 L;  1B2O A;  3FDJ A;  1QQT A;  3LNL A;  2M6O A;  1T9P A;  3S1Q L;  2M4V A;  4YWL A;  4ME3 A;  1SFO L;  4A3K L;  2L0Z A;  4AHY A;  2V3B B;  3HOZ L;  5GAH c;  5M5Y L;  1OWB A;  5EIO C;  1RDG A;  4V19 6;  1S2Z A;  3KYV A;  3PIO 1;  2GMG A;  1IU6 A;  2CKA A;  1YUZ A;  2Z3R B;  3LWP B;  5IYC L;  2B5I D;  4A3E L;  3QQC E;  3I4N L;  1T9O A;  2JA8 L;  3GTL L;  3HOV L;  3HJW B;  5IY0 A;  1YUX A;  5C3E L;  4E6Y A;  2Z3Q B;  3GTP L;  4AI2 A;  4AI3 A;  5FLM L;  7RXN A;  3GTM L;  5FJ8 L;  1TWA L;  3H9B A;  2ERJ A;  5MF6 A;  8RXN A;  2R92 L;  1K83 L;  2JA7 L;  1DX8 A;  1QYB A;  2E2H L;  1JYB A;  1LKM A;  2M6P A;  4LHN A;  2Y0S P;  5DM7 1;  2XJS A;  1S30 A;  3KYY A;  4LHL A;  2J9U B;  3M4O L;  3PZA A;  3S15 L;  1RB9 A;  3HKZ P;  4XGH A;  4G6B A;  1PZX A;  4AHX A;  1NXG A;  1SMW A;  4BBS L;  3H3V M;  4UY8 1;  1BRF A;  3CQZ L;  1PFV A;  3IU3 I;  2PYA A;  2QL0 A;  4BBR L;  2DSX A;  1I6H L;  1NXE A;  1YV1 A;  3MQK B;  3LWQ B;  3LWR B;  1ZRP A;  2RDV A;  2PSM C;  5K2M E;  1B71 A;  4C3I L;  5M5X L;  4YWM A;  1RDV A;  1TWG L;  2XJR A;  4ZN1 B;  2VL6 A;  4B8C D;  5C44 L;  4POG A;  3GTJ L;  1IW7 D;  1LKP A;  4TPU A;  4BY7 L;  1FHH A;  1S24 A;  2KKD A;  3PKI A;  2HR5 A;  3B0A B;  4A3L L;  2EY4 E;  5MFP A;  1Y1V L;  3LPE B;  4AR3 A;  3MSU A;  3PIP 1;  4JAG A;  4A3M L;  4A3I L;  2NYD A;  2PVX A;  1YK4 A;  1R0I A;  3GTQ L;  3J7Z 1;  1BQ9 A;  3HOX L;  3RZO L;  1B13 A;  1CAA A;  4JAF A;  1IRO A;  3LWO B;  3K35 A;  5JVH 1;  2ERS A;  2ZIX A;  2LCQ A;  4WFN 1;  2RFK B;  5M3F L;  2H12 A;  5AN9 H;  1BQ8 A;  1R0G A;  2NVT L;  1C09 A;  1TWC L;  2NVQ L;  1IU5 A;  4A3C L;  3P8B A;  3QVD A;  3K7A L;  3GTK L;  3HJY B;  4AHZ A;  3RYG A;  5C4J L;  3PO3 L;  4X6A L;  5JVG 1;  4A3G L;  3KYX A;  3S17 L;  1OWC A;  1LKO A;  5H1S c;  1IRN A;  3J7Y 1;  5GAD c;  1R9T L;  3H0G L;  4A3J L;  1PFW A;  4AR5 A;  3S1N L;  3S14 L;  1VZG A;  3PKJ A;  3HOU L;  2M4Y A;  3P2A A;  4GS7 D;  4ZN3 B;  3KYW A;  2A6E D;  4TVM A;  5IYB L;  4AR6 A;  1R0H A;  1VCX A;  1PFY A;  1QCV A;  4POF A;  2KN9 A;  2V0F A;  3RZD L;  2A68 D;  2MS3 A;  4C3J L;  2E2I L;  2JI3 A;  2JI1 A;  1RWD A;  4A3F L;  4A3D L;  3A44 A;  3SS2 A;  5RXN A;  2PPT A;  2XJP A;  4JAE A;  1DVB A;  3PL5 A;  3PWF A;  3H9C A;  2PMZ P;  2R7Z L;  5EIN C;  1TWF L;  3S16 L;  3RZT A;  4AR4 A;  2AQC A;  5IYD L;  2CKC A;  2B63 L;  3M3Y L;  4RXN A;  3GTG L;  3HOW L;  1T9Q A;  4AI0 A;  1FHM A;  3WWL A;  1YK5 A;  2JI2 A;  1PFU A;  1ODH A;  3H97 A;  4K9F A;  4AI1 A;  1TWH L;  2O5J D;  1Z92 B;  1VZH A;  3RZ6 A;  3S1R L;  2WAQ P;  2K2D A;  2JA6 L;  3HOY L;  2C6A A;  1I50 L;  6RXN A;  1R0F A;  1SMM A;  5MLC 3;  4C2M 1;  1F4L A;  3WWN B;  4XXB B;  3H99 A;  2CR8 A;  2NVY L;  1R0J A;  1I3Q L;  2AYJ A;  1RYT A;  4A3B L;  2XJT A;  3B08 B;  1BFY A;  2E2J L;  1VZI A;  4C3H L;  4JAD A;  4BXX L;  3LWV B;  1BE7 A;  4U67 1;  1B2J A;  1H7V A;  2R93 L;  2C6B A;  2BE5 D;  3S2D L;  2JA5 L;  2YU9 L;  1Y1W L;  5AI3 A; 
#chains in the Genus database with same CATH homology
 1T9O A;  1E8J A;  3A44 A;  1LTL A;  2A6H D;  2XJU A;  5IY0 A;  5DM6 1;  3B0A B;  1YUX A;  3SS2 A;  1WJV A;  5RXN A;  5MFP A;  2PPT A;  4E6Y A;  3LPE B;  2XJP A;  4JAE A;  3MSU A;  4AR3 A;  3PIP 1;  2V0E A;  4JAG A;  2XJQ A;  2Z3Q B;  2NYD A;  4AI2 A;  2PVX A;  1YK4 A;  4AI3 A;  7RXN A;  1DVB A;  3KYU A;  1R0I A;  2ERJ A;  3PWF A;  5MF6 A;  3J7Z 1;  1BQ9 A;  8RXN A;  1SMU A;  3NFP I;  5MGN A;  1B13 A;  5EIN C;  1CAA A;  4JAF A;  1IRO A;  3RZT A;  1NNQ A;  1RYQ A;  4AR4 A;  1DX8 A;  3K35 A;  5AI2 A;  3MPS A;  2CKC A;  5JVH 1;  1QYB A;  2A69 D;  4RXN A;  5MFZ A;  5GAG c;  1JYB A;  3VPB E;  1T9Q A;  1LKM A;  2M6P A;  4LHN A;  4AI0 A;  1FHM A;  3WWL A;  2ERS A;  1YK5 A;  2ZIX A;  2LCQ A;  2PVE A;  5DM7 1;  2XJS A;  1S30 A;  2JI2 A;  3KYY A;  2XJV A;  4LHL A;  2J9U B;  4WFN 1;  2H12 A;  3PZA A;  1ODH A;  1CAD A;  4K9F A;  5AN9 H;  4AI1 A;  1BQ8 A;  2O5J D;  1R0G A;  1RB9 A;  1C09 A;  1Z92 B;  1VZH A;  4AHW A;  1IU5 A;  3RZ6 A;  5GAE c;  4XGH A;  4G6B A;  3P8B A;  2K2D A;  4AHX A;  3ZG6 A;  1NXG A;  3QVD A;  1SMW A;  4AHZ A;  3RYG A;  2C6A A;  1BRF A;  4UY8 1;  3IU3 I;  2PYA A;  1R0F A;  1SMM A;  2QL0 A;  6RXN A;  5JVG 1;  1B2O A;  5MLC 3;  2DSX A;  3KYX A;  1NXE A;  1YV1 A;  3WWN B;  1OWC A;  1LKO A;  2M6O A;  3LNL A;  4XXB B;  1T9P A;  5H1S c;  1IRN A;  3J7Y 1;  5GAD c;  2M4V A;  4YWL A;  2CR8 A;  4ME3 A;  1R0J A;  2AYJ A;  1RYT A;  4AR5 A;  2L0Z A;  1VZG A;  4AHY A;  2V3B B;  3PKJ A;  1ZRP A;  2M4Y A;  3P2A A;  2XJT A;  2RDV A;  3B08 B;  5GAH c;  4GS7 D;  1OWB A;  4ZN3 B;  3KYW A;  1VZI A;  1BFY A;  4JAD A;  2PSM C;  5EIO C;  5K2M E;  1RDG A;  2A6E D;  4TVM A;  4AR6 A;  1B71 A;  1BE7 A;  4U67 1;  4V19 6;  1S2Z A;  3KYV A;  1B2J A;  3PIO 1;  1H7V A;  2GMG A;  1VCX A;  1R0H A;  1IU6 A;  1RDV A;  4YWM A;  1QCV A;  2CKA A;  4POF A;  2XJR A;  2C6B A;  4ZN1 B;  2VL6 A;  2KN9 A;  2V0F A;  2BE5 D;  4B8C D;  1YUZ A;  4POG A;  1IW7 D;  1LKP A;  4TPU A;  2Z3R B;  2A68 D;  2MS3 A;  1FHH A;  1S24 A;  2KKD A;  3PKI A;  2JI3 A;  2HR5 A;  2B5I D;  2JI1 A;  5AI3 A;  1RWD A;  3QQC E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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