5GAHc

Rnc in complex with srp with detached ng domain
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
51
structure length
51
Chain Sequence
GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 6
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
c PF00471 Ribosomal_L33 Ribosomal protein L33
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.120 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 5gahc00
5DM61 3J7Y1 4WFN1 4U671 5DM71 3PIP1 5JVG1 5JVH1 4V196 5MLC3 5GAGc 5GADc 5H1Sc 5GAEc 3PIO1 5GAHc 4UY81 3J7Z1
chains in the Genus database with same CATH superfamily
3GTQL 4C3JL 2O5JD 7RXNA 1BFYA 2AYJA 4TVMA 2K2DA 3S1QL 2R7ZL 6RXNA 1PFYA 4XGHA 4ZN1B 4WFN1 4K9FA 1T9PA 3RZ6A 3MPSA 3S1RL 1SFOL 1S30A 8RXNA 5IYBL 3SS2A 2ZIXA 1SMMA 5GADc 2JA7L 1JYBA 3PWFA 3PKIA 1ZRPA 2A68D 3GTML 3LPEB 3KYYA 3RZTA 2C6BA 4AR5A 2PVEA 1B2OA 1IU5A 1RDGA 2QL0A 5AI2A 4X6AL 1PFUA 1Z92B 3H0GL 1FHHA 1RB9A 3VPBE 2E2HL 3K35A 2M6PA 3RZOL 1OWBA 1VZHA 5AI3A 5M5XL 2PVXA 3S17L 5C4XL 3KYVA 4A3FL 2HVYC 1B71A 3PIO1 2H12A 4AR4A 5C3EL 4JAEA 2APOB 5EIOC 3LWQB 3LWRB 2B63L 4BY7L 1YUZA 4Y52L 2A69D 1WCML 3FKIL 1RYQA 3IU3I 2WB1P 5H1Sc 2NYDA 2Y0SP 2C6AA 1PFVA 2E2IL 5K2ME 1BE7A 5C4JL 2V0EA 2V0FA 1S2ZA 4A3CL 1CADA 1H7VA 3LWOB 2JI2A 1P7PA 4POGA 4C3HL 2KKDA 3QVDA 3P2AA 2HR5A 1B2JA 2V3BB 2AQCA 3MSUA 3H9CA 5GAGc 2JA5L 2XJVA 3A44A 2JI3A 2JA6L 3J7Y1 4C2M1 3PL5A 4AHZA 2R92L 1I50L 2M4YA 4ME3A 3GTGL 5JVH1 1LTLA 5IP7L 3GTKL 3HOYL 3H99A 3KYUA 1IW7D 4A3BL 2R93L 3B0AB 1QYBA 1TWFL 3S1NL 1VZGA 3MQKB 2M6OA 4AHYA 1R0JA 1K83L 2GMGA 1DVBA 2PSMC 2PYAA 3LNLA 4AI0A 4LHLA 4V196 3KYWA 5MFZA 2LCQA 2NVTL 1DX8A 1VZIA 2CKCA 5EINC 2NVYL 4A3JL 2Z3RB 1YK5A 4UY81 3CQZL 1I6HL 4A93L 4YWLA 2CR8A 2NVQL 4YWMA 3H9BA 1YV1A 5MF6A 3ZG6A 3FDJA 2XJRA 4LHNA 4QIWP 2JI1A 1BQ8A 2A6HD 4AI1A 4GS7D 1TWGL 1R0HA 5AN9H 1Y1VL 4AYBP 2NVXL 3HOWL 3S1ML 3H3VM 3HJWB 1NNQA 1C09A 3M4OL 5MLC3 3H97A 5FJ8L 4BY1L 4TPUA 3HKZP 3RYGA 3J7Z1 2JA8L 5IYCL 3S2DL 1Y1WL 5DM71 4RXNA 1YK4A 1IRNA 1T9QA 1RWDA 5IY0A 1R0IA 3HOVL 2YU9L 2XJPA 1VCXA 5MGNA 2J9UB 4A3GL 2XJUA 1NXEA 5M3FL 5IP9L 4A3IL 4JAGA 1PFWA 4JAFA 4BXXL 1QCVA 4A3ML 3PO3L 2RDVA 3LWVB 3M3YL 5M3ML 3K7AL 4B8CD 4C3IL 3S2HL 1LKMA 2E2JL 5C44L 1IU6A 3RZDL 1LKPA 2RFKB 2VUML 3S14L 1PZXA 4Y7NL 1I3QL 3QQCE 1CAAA 2L0ZA 2B5ID 3PIP1 2DSXA 2EY4E 2VL6A 3NFPI 2XJSA 3PKJA 3WWLA 1LKOA 2ERSA 1R0GA 1WJVA 2PPTA 3P8BA 5M5WL 1SMWA 5GAHc 4A3KL 3PO2L 1IROA 1TWHL 3LWPB 3B08B 4BBSL 5M5YL 4POFA 3HOUL 3S15L 4E6YA 2CKAA 3GTOL 1TWAL 1E8JA 2XJTA 1OWCA 1B13A 1QQTA 4JADA 5JVG1 3I4NL 1RYTA 2A6ED 4AHXA 4A3DL 1FHMA 1R0FA 3JR7A 1YUXA 3PZAA 4A3EL 4BBRL 2WAQP 3GTJL 1R9TL 4XXBB 1BQ9A 5RXNA 5FLML 4AI3A 2BE5D 4AHWA 3I4ML 5DM61 1SMUA 4U671 4AR3A 3HOZL 3WWNB 4AI2A 2AUSB 3HAXC 4A3LL 5MFPA 2MS3A 3HJYB 4AR6A 3GTPL 5GAEc 1F4LA 3KYXA 1ODHA 1TWCL 1T9OA 1RDVA 3GTLL 2ERJA 2Z3QB 5IYDL 2XJQA 1S24A 3S16L 2KN9A 1NXGA 2M4VA 3HOXL 4G6BA 4ZN3B 1BRFA 2PMZP
chains in the Genus database with same CATH topology
2B5ID 5K2ME 2XJRA 3PIP1 1BE7A 2DSXA 2O5JD 2V0EA 4LHNA 2VL6A 3NFPI 7RXNA 2JI1A 1BFYA 1BQ8A 1S2ZA 2AYJA 2A6HD 1CADA 2K2DA 2V0FA 2XJSA 4GS7D 4TVMA 4AI1A 3PKJA 6RXNA 3WWLA 1R0HA 1LKOA 2ERSA 1R0GA 5AN9H 1H7VA 1WJVA 4XGHA 2PPTA 4ZN1B 4WFN1 4K9FA 1T9PA 3RZ6A 3P8BA 1SMWA 5GAHc 1IROA 2JI2A 3MPSA 4POGA 3B08B 1S30A 8RXNA 2KKDA 3SS2A 4POFA 2ZIXA 3QVDA 4E6YA 2CKAA 1E8JA 2XJTA 1OWCA 1SMMA 3P2AA 5GADc 1B13A 1NNQA 1C09A 1JYBA 2HR5A 1B2JA 2V3BB 3PWFA 4JADA 3PKIA 5JVG1 1ZRPA 3MSUA 5MLC3 5GAGc 2A68D 2XJVA 3A44A 4TPUA 3LPEB 1RYTA 2JI3A 3RYGA 3J7Z1 2A6ED 3J7Y1 3KYYA 3RZTA 5DM71 2C6BA 4RXNA 4AR5A 2PVEA 1B2OA 1IU5A 1YK4A 1IRNA 1RDGA 2QL0A 4AHXA 1T9QA 5AI2A 4AHZA 1FHMA 1RWDA 5IY0A 1R0FA 1R0IA 1YUXA 1Z92B 3PZAA 2M4YA 4ME3A 5JVH1 1FHHA 2XJPA 1LTLA 1RB9A 1VCXA 3VPBE 5MGNA 2J9UB 4XXBB 1BQ9A 1NXEA 2XJUA 5RXNA 3K35A 2M6PA 3KYUA 1IW7D 2BE5D 4AI3A 3B0AB 1QYBA 4AHWA 4JAGA 1OWBA 4JAFA 1QCVA 1VZHA 1VZGA 5AI3A 2PVXA 2RDVA 1SMUA 2M6OA 5DM61 4AHYA 4U671 1R0JA 3KYVA 2GMGA 1B71A 1DVBA 2PSMC 2PYAA 3PIO1 3LNLA 4AI0A 4LHLA 4AR3A 4B8CD 4V196 3KYWA 2H12A 5MFZA 2LCQA 4AR4A 3WWNB 4AI2A 1DX8A 1VZIA 4JAEA 1LKMA 2CKCA 5EIOC 5MFPA 2MS3A 5EINC 4AR6A 1IU6A 1YUZA 5GAEc 2Z3RB 3KYXA 2A69D 1ODHA 1YK5A 4UY81 1T9OA 1RDVA 1LKPA 1RYQA 4YWLA 3IU3I 2CR8A 2ERJA 5H1Sc 2Z3QB 4YWMA 2XJQA 1S24A 2NYDA 2KN9A 1YV1A 1NXGA 2M4VA 2C6AA 5MF6A 3QQCE 1CAAA 4G6BA 2L0ZA 4ZN3B 3ZG6A 1BRFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DM6 1;  3J7Y 1;  4WFN 1;  4U67 1;  5DM7 1;  3PIP 1;  5JVG 1;  5JVH 1;  4V19 6;  5MLC 3;  5GAG c;  5GAD c;  5H1S c;  5GAE c;  3PIO 1;  5GAH c;  4UY8 1;  3J7Z 1; 
#chains in the Genus database with same CATH topology
 3GTQ L;  4C3J L;  2O5J D;  7RXN A;  1BFY A;  2AYJ A;  4TVM A;  2K2D A;  3S1Q L;  2R7Z L;  6RXN A;  1PFY A;  4XGH A;  4ZN1 B;  4WFN 1;  4K9F A;  1T9P A;  3RZ6 A;  3MPS A;  3S1R L;  1SFO L;  1S30 A;  8RXN A;  5IYB L;  3SS2 A;  2ZIX A;  1SMM A;  5GAD c;  2JA7 L;  1JYB A;  3PWF A;  3PKI A;  1ZRP A;  2A68 D;  3GTM L;  3LPE B;  3KYY A;  3RZT A;  2C6B A;  4AR5 A;  2PVE A;  1B2O A;  1IU5 A;  1RDG A;  2QL0 A;  5AI2 A;  4X6A L;  1PFU A;  1Z92 B;  3H0G L;  1FHH A;  1RB9 A;  3VPB E;  2E2H L;  3K35 A;  2M6P A;  3RZO L;  1OWB A;  1VZH A;  5AI3 A;  5M5X L;  2PVX A;  3S17 L;  5C4X L;  3KYV A;  4A3F L;  2HVY C;  1B71 A;  3PIO 1;  2H12 A;  4AR4 A;  5C3E L;  4JAE A;  2APO B;  5EIO C;  3LWQ B;  3LWR B;  2B63 L;  4BY7 L;  1YUZ A;  4Y52 L;  2A69 D;  1WCM L;  3FKI L;  1RYQ A;  3IU3 I;  2WB1 P;  5H1S c;  2NYD A;  2Y0S P;  2C6A A;  1PFV A;  2E2I L;  5K2M E;  1BE7 A;  5C4J L;  2V0E A;  2V0F A;  1S2Z A;  4A3C L;  1CAD A;  1H7V A;  3LWO B;  2JI2 A;  1P7P A;  4POG A;  4C3H L;  2KKD A;  3QVD A;  3P2A A;  2HR5 A;  1B2J A;  2V3B B;  2AQC A;  3MSU A;  3H9C A;  5GAG c;  2JA5 L;  2XJV A;  3A44 A;  2JI3 A;  2JA6 L;  3J7Y 1;  4C2M 1;  3PL5 A;  4AHZ A;  2R92 L;  1I50 L;  2M4Y A;  4ME3 A;  3GTG L;  5JVH 1;  1LTL A;  5IP7 L;  3GTK L;  3HOY L;  3H99 A;  3KYU A;  1IW7 D;  4A3B L;  2R93 L;  3B0A B;  1QYB A;  1TWF L;  3S1N L;  1VZG A;  3MQK B;  2M6O A;  4AHY A;  1R0J A;  1K83 L;  2GMG A;  1DVB A;  2PSM C;  2PYA A;  3LNL A;  4AI0 A;  4LHL A;  4V19 6;  3KYW A;  5MFZ A;  2LCQ A;  2NVT L;  1DX8 A;  1VZI A;  2CKC A;  5EIN C;  2NVY L;  4A3J L;  2Z3R B;  1YK5 A;  4UY8 1;  3CQZ L;  1I6H L;  4A93 L;  4YWL A;  2CR8 A;  2NVQ L;  4YWM A;  3H9B A;  1YV1 A;  5MF6 A;  3ZG6 A;  3FDJ A;  2XJR A;  4LHN A;  4QIW P;  2JI1 A;  1BQ8 A;  2A6H D;  4AI1 A;  4GS7 D;  1TWG L;  1R0H A;  5AN9 H;  1Y1V L;  4AYB P;  2NVX L;  3HOW L;  3S1M L;  3H3V M;  3HJW B;  1NNQ A;  1C09 A;  3M4O L;  5MLC 3;  3H97 A;  5FJ8 L;  4BY1 L;  4TPU A;  3HKZ P;  3RYG A;  3J7Z 1;  2JA8 L;  5IYC L;  3S2D L;  1Y1W L;  5DM7 1;  4RXN A;  1YK4 A;  1IRN A;  1T9Q A;  1RWD A;  5IY0 A;  1R0I A;  3HOV L;  2YU9 L;  2XJP A;  1VCX A;  5MGN A;  2J9U B;  4A3G L;  2XJU A;  1NXE A;  5M3F L;  5IP9 L;  4A3I L;  4JAG A;  1PFW A;  4JAF A;  4BXX L;  1QCV A;  4A3M L;  3PO3 L;  2RDV A;  3LWV B;  3M3Y L;  5M3M L;  3K7A L;  4B8C D;  4C3I L;  3S2H L;  1LKM A;  2E2J L;  5C44 L;  1IU6 A;  3RZD L;  1LKP A;  2RFK B;  2VUM L;  3S14 L;  1PZX A;  4Y7N L;  1I3Q L;  3QQC E;  1CAA A;  2L0Z A;  2B5I D;  3PIP 1;  2DSX A;  2EY4 E;  2VL6 A;  3NFP I;  2XJS A;  3PKJ A;  3WWL A;  1LKO A;  2ERS A;  1R0G A;  1WJV A;  2PPT A;  3P8B A;  5M5W L;  1SMW A;  5GAH c;  4A3K L;  3PO2 L;  1IRO A;  1TWH L;  3LWP B;  3B08 B;  4BBS L;  5M5Y L;  4POF A;  3HOU L;  3S15 L;  4E6Y A;  2CKA A;  3GTO L;  1TWA L;  1E8J A;  2XJT A;  1OWC A;  1B13 A;  1QQT A;  4JAD A;  5JVG 1;  3I4N L;  1RYT A;  2A6E D;  4AHX A;  4A3D L;  1FHM A;  1R0F A;  3JR7 A;  1YUX A;  3PZA A;  4A3E L;  4BBR L;  2WAQ P;  3GTJ L;  1R9T L;  4XXB B;  1BQ9 A;  5RXN A;  5FLM L;  4AI3 A;  2BE5 D;  4AHW A;  3I4M L;  5DM6 1;  1SMU A;  4U67 1;  4AR3 A;  3HOZ L;  3WWN B;  4AI2 A;  2AUS B;  3HAX C;  4A3L L;  5MFP A;  2MS3 A;  3HJY B;  4AR6 A;  3GTP L;  5GAE c;  1F4L A;  3KYX A;  1ODH A;  1TWC L;  1T9O A;  1RDV A;  3GTL L;  2ERJ A;  2Z3Q B;  5IYD L;  2XJQ A;  1S24 A;  3S16 L;  2KN9 A;  1NXG A;  2M4V A;  3HOX L;  4G6B A;  4ZN3 B;  1BRF A;  2PMZ P; 
#chains in the Genus database with same CATH homology
 2B5I D;  5K2M E;  2XJR A;  3PIP 1;  1BE7 A;  2DSX A;  2O5J D;  2V0E A;  4LHN A;  2VL6 A;  3NFP I;  7RXN A;  2JI1 A;  1BFY A;  1BQ8 A;  1S2Z A;  2AYJ A;  2A6H D;  1CAD A;  2K2D A;  2V0F A;  2XJS A;  4GS7 D;  4TVM A;  4AI1 A;  3PKJ A;  6RXN A;  3WWL A;  1R0H A;  1LKO A;  2ERS A;  1R0G A;  5AN9 H;  1H7V A;  1WJV A;  4XGH A;  2PPT A;  4ZN1 B;  4WFN 1;  4K9F A;  1T9P A;  3RZ6 A;  3P8B A;  1SMW A;  5GAH c;  1IRO A;  2JI2 A;  3MPS A;  4POG A;  3B08 B;  1S30 A;  8RXN A;  2KKD A;  3SS2 A;  4POF A;  2ZIX A;  3QVD A;  4E6Y A;  2CKA A;  1E8J A;  2XJT A;  1OWC A;  1SMM A;  3P2A A;  5GAD c;  1B13 A;  1NNQ A;  1C09 A;  1JYB A;  2HR5 A;  1B2J A;  2V3B B;  3PWF A;  4JAD A;  3PKI A;  5JVG 1;  1ZRP A;  3MSU A;  5MLC 3;  5GAG c;  2A68 D;  2XJV A;  3A44 A;  4TPU A;  3LPE B;  1RYT A;  2JI3 A;  3RYG A;  3J7Z 1;  2A6E D;  3J7Y 1;  3KYY A;  3RZT A;  5DM7 1;  2C6B A;  4RXN A;  4AR5 A;  2PVE A;  1B2O A;  1IU5 A;  1YK4 A;  1IRN A;  1RDG A;  2QL0 A;  4AHX A;  1T9Q A;  5AI2 A;  4AHZ A;  1FHM A;  1RWD A;  5IY0 A;  1R0F A;  1R0I A;  1YUX A;  1Z92 B;  3PZA A;  2M4Y A;  4ME3 A;  5JVH 1;  1FHH A;  2XJP A;  1LTL A;  1RB9 A;  1VCX A;  3VPB E;  5MGN A;  2J9U B;  4XXB B;  1BQ9 A;  1NXE A;  2XJU A;  5RXN A;  3K35 A;  2M6P A;  3KYU A;  1IW7 D;  2BE5 D;  4AI3 A;  3B0A B;  1QYB A;  4AHW A;  4JAG A;  1OWB A;  4JAF A;  1QCV A;  1VZH A;  1VZG A;  5AI3 A;  2PVX A;  2RDV A;  1SMU A;  2M6O A;  5DM6 1;  4AHY A;  4U67 1;  1R0J A;  3KYV A;  2GMG A;  1B71 A;  1DVB A;  2PSM C;  2PYA A;  3PIO 1;  3LNL A;  4AI0 A;  4LHL A;  4AR3 A;  4B8C D;  4V19 6;  3KYW A;  2H12 A;  5MFZ A;  2LCQ A;  4AR4 A;  3WWN B;  4AI2 A;  1DX8 A;  1VZI A;  4JAE A;  1LKM A;  2CKC A;  5EIO C;  5MFP A;  2MS3 A;  5EIN C;  4AR6 A;  1IU6 A;  1YUZ A;  5GAE c;  2Z3R B;  3KYX A;  2A69 D;  1ODH A;  1YK5 A;  4UY8 1;  1T9O A;  1RDV A;  1LKP A;  1RYQ A;  4YWL A;  3IU3 I;  2CR8 A;  2ERJ A;  5H1S c;  2Z3Q B;  4YWM A;  2XJQ A;  1S24 A;  2NYD A;  2KN9 A;  1YV1 A;  1NXG A;  2M4V A;  2C6A A;  5MF6 A;  3QQC E;  1CAA A;  4G6B A;  2L0Z A;  4ZN3 B;  3ZG6 A;  1BRF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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