5GAHc

Rnc in complex with srp with detached ng domain
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
51
structure length
51
Chain Sequence
b'GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 6
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
c PF00471 Ribosomal_L33 Ribosomal protein L33
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.120 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 5gahc00
4U671 5JVH1 5MLC3 4V196 3PIO1 3J7Y1 3PIP1 5DM71 4UY81 5GADc 5H1Sc 5JVG1 5GAHc 5GAGc 4WFN1 5DM61 3J7Z1 5GAEc
chains in the Genus database with same CATH superfamily
1B2JA 3VPBE 1S24A 1YUZA 4JAEA 1PFWA 1PFUA 3S1NL 2HVYC 2E2HL 1OWBA 4BY1L 2AYJA 3CQZL 1PZXA 4AI3A 4BY7L 4POGA 3S1QL 3H9BA 5C3EL 3HAXC 5GAGc 1RYQA 2LCQA 1SMUA 3PO2L 1T9QA 2Y0SP 4C3IL 2ERJA 1SFOL 3S16L 5GAEc 2ERSA 1K83L 4XGHA 1IRNA 4A3IL 4AR4A 3LWPB 5IYDL 1YK5A 1NNQA 3P2AA 5MFPA 4A3ML 4U671 3HOYL 3RYGA 2MS3A 3WWLA 3RZTA 5K2ME 1TWGL 5DM61 3RZDL 5IYBL 4YWLA 1Y1WL 2XJPA 3PKJA 1I50L 2APOB 2C6BA 1IW7D 1DX8A 5IP9L 2E2JL 3QVDA 5JVH1 3GTJL 5M5WL 3HOVL 3KYUA 5EINC 3PKIA 4A3BL 4AI1A 1R9TL 2AQCA 2JA8L 5M5XL 3S15L 3H3VM 4TVMA 1ZRPA 1NXEA 4A3GL 5M5YL 4A93L 3GTKL 2V3BB 3S17L 1RDGA 2A6ED 1Y1VL 3GTPL 1BE7A 4UY81 1OWCA 1C09A 5JVG1 1I6HL 5M3ML 1S2ZA 1YUXA 3HKZP 3J7Y1 1VZIA 4XXBB 4BBSL 1SMWA 2VL6A 3PO3L 1LKMA 1S30A 1Z92B 2JA5L 4E6YA 1VCXA 4X6AL 1PFVA 1T9OA 4V196 2ZIXA 3H9CA 5GADc 2GMGA 4C3HL 1BQ9A 2E2IL 3FKIL 5MF6A 3KYWA 2A6HD 3K7AL 4ZN3B 6RXNA 3HOWL 2NVYL 4BXXL 1QQTA 1QCVA 3ZG6A 4BBRL 4A3DL 1R0GA 4GS7D 2C6AA 1F4LA 2B63L 1YV1A 2PVEA 3H0GL 3PZAA 1B2OA 1LKOA 1BFYA 2JA6L 3LWVB 4YWMA 4AR3A 2V0EA 2XJUA 4JAFA 4AR5A 1R0HA 3K35A 4A3FL 2DSXA 4C3JL 1CADA 3H97A 1H7VA 5M3FL 2XJSA 1R0FA 2PVXA 2A68D 3HJYB 4AHZA 2V0FA 2XJQA 4ZN1B 4TPUA 5IY0A 2M4YA 1BQ8A 3PIO1 4B8CD 1TWAL 4AI2A 2XJVA 3H99A 2A69D 2L0ZA 3HOZL 4A3KL 3MQKB 3SS2A 3QQCE 4LHNA 1IU5A 2R92L 2R93L 2AUSB 4RXNA 3GTOL 3S2HL 5C4XL 5MGNA 3MPSA 1PFYA 1QYBA 3GTLL 1NXGA 1LKPA 1R0IA 2KN9A 3KYVA 2HR5A 4LHLA 3HOUL 1RYTA 2JI3A 4JAGA 3NFPI 3P8BA 4A3EL 5C4JL 3LWQB 3PWFA 4WFN1 2WB1P 1TWCL 4AR6A 1IROA 4AYBP 4ME3A 5FJ8L 2KKDA 5MLC3 3M4OL 1BRFA 2M6OA 5RXNA 3J7Z1 5IP7L 4A3CL 2CKCA 3A44A 2JI2A 4AHYA 3RZOL 2H12A 1DVBA 3MSUA 3M3YL 2B5ID 3WWNB 5IYCL 3RZ6A 1RWDA 2XJRA 3HOXL 2XJTA 4G6BA 2CKAA 3PL5A 1R0JA 7RXNA 2NVQL 4QIWP 3GTML 3S1ML 1TWFL 1VZHA 1LTLA 2Z3QB 2PYAA 2BE5D 2JI1A 2K2DA 3LWOB 5AI2A 3LWRB 3S2DL 5AN9H 2PMZP 2R7ZL 2RFKB 2NYDA 1TWHL 3GTGL 8RXNA 2PPTA 1CAAA 4JADA 3S1RL 1JYBA 3GTQL 1I3QL 1B13A 2NVTL 1ODHA 4POFA 2O5JD 4C2M1 3B0AB 1T9PA 1SMMA 1E8JA 1FHHA 5AI3A 1WJVA 4AHWA 3I4NL 5DM71 5H1Sc 3HJWB 1RB9A 3IU3I 3S14L 5MFZA 2PSMC 3PIP1 2EY4E 2CR8A 4AHXA 2J9UB 3I4ML 2VUML 1VZGA 5GAHc 3JR7A 4A3JL 2M4VA 2JA7L 5FLML 5EIOC 3KYYA 2WAQP 3B08B 1WCML 1RDVA 2Z3RB 3FDJA 2M6PA 3KYXA 1IU6A 4A3LL 1YK4A 1P7PA 3LPEB 2NVXL 4Y7NL 4K9FA 3LNLA 5C44L 4AI0A 2QL0A 1B71A 2YU9L 2RDVA 1FHMA 4Y52L
chains in the Genus database with same CATH topology
4TVMA 1BQ8A 3PIO1 4B8CD 1ZRPA 1B2JA 1NXEA 1VZHA 3VPBE 1S24A 1LTLA 1YUZA 2Z3QB 2V3BB 4JAEA 4AI2A 2XJVA 2PYAA 1RDGA 2BE5D 2A6ED 2JI1A 1OWBA 1BE7A 4UY81 2A69D 2AYJA 2K2DA 2L0ZA 5AI2A 1OWCA 4AI3A 5AN9H 3SS2A 2NYDA 3QQCE 4LHNA 4POGA 1C09A 5JVG1 1IU5A 8RXNA 5GAGc 1RYQA 1S2ZA 1YUXA 2PPTA 4RXNA 3J7Y1 2LCQA 1VZIA 1SMUA 1CAAA 4JADA 4XXBB 1JYBA 1SMWA 2VL6A 1LKMA 1S30A 5MGNA 1B13A 1T9QA 3MPSA 1QYBA 1Z92B 2ERJA 1NXGA 1ODHA 4E6YA 1VCXA 1LKPA 1R0IA 2KN9A 4POFA 5GAEc 2O5JD 3KYVA 2HR5A 2ERSA 4LHLA 4XGHA 3B0AB 1IRNA 1RYTA 1T9PA 4AR4A 2JI3A 1SMMA 1T9OA 4JAGA 1E8JA 1FHHA 5AI3A 1WJVA 4AHWA 1YK5A 4V196 2ZIXA 3NFPI 5DM71 5GADc 5H1Sc 2GMGA 3P8BA 1BQ9A 1NNQA 3P2AA 5MFPA 1RB9A 3IU3I 5MF6A 4U671 5MFZA 2PSMC 3PIP1 3KYWA 2A6HD 2CR8A 4AHXA 2J9UB 3PWFA 4WFN1 3RYGA 4ZN3B 2MS3A 6RXNA 3WWLA 1VZGA 3RZTA 4AR6A 1IROA 5K2ME 5GAHc 1QCVA 3ZG6A 2M4VA 5DM61 4ME3A 5EIOC 2KKDA 3KYYA 5MLC3 1R0GA 4YWLA 4GS7D 2C6AA 1BRFA 2XJPA 2M6OA 3PKJA 5RXNA 3J7Z1 3B08B 2C6BA 2CKCA 1IW7D 1YV1A 3A44A 4AR5A 1DX8A 2PVEA 2JI2A 4AHYA 3PZAA 1RDVA 2H12A 1B2OA 1LKOA 1DVBA 1BFYA 2Z3RB 3QVDA 2M6PA 3KYXA 5JVH1 3MSUA 1IU6A 4YWMA 1YK4A 2V0EA 2XJUA 3LPEB 2B5ID 4JAFA 3WWNB 1R0HA 4AR3A 3RZ6A 3K35A 3KYUA 2DSXA 1RWDA 3PKIA 3LNLA 4K9FA 5EINC 1CADA 4AI1A 2XJRA 1H7VA 2XJSA 1R0FA 2XJTA 4G6BA 2CKAA 2PVXA 2A68D 4AI0A 2QL0A 4AHZA 2V0FA 1R0JA 7RXNA 2XJQA 1B71A 4ZN1B 4TPUA 2RDVA 5IY0A 1FHMA 2M4YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U67 1;  5JVH 1;  5MLC 3;  4V19 6;  3PIO 1;  3J7Y 1;  3PIP 1;  5DM7 1;  4UY8 1;  5GAD c;  5H1S c;  5JVG 1;  5GAH c;  5GAG c;  4WFN 1;  5DM6 1;  3J7Z 1;  5GAE c; 
#chains in the Genus database with same CATH topology
 1B2J A;  3VPB E;  1S24 A;  1YUZ A;  4JAE A;  1PFW A;  1PFU A;  3S1N L;  2HVY C;  2E2H L;  1OWB A;  4BY1 L;  2AYJ A;  3CQZ L;  1PZX A;  4AI3 A;  4BY7 L;  4POG A;  3S1Q L;  3H9B A;  5C3E L;  3HAX C;  5GAG c;  1RYQ A;  2LCQ A;  1SMU A;  3PO2 L;  1T9Q A;  2Y0S P;  4C3I L;  2ERJ A;  1SFO L;  3S16 L;  5GAE c;  2ERS A;  1K83 L;  4XGH A;  1IRN A;  4A3I L;  4AR4 A;  3LWP B;  5IYD L;  1YK5 A;  1NNQ A;  3P2A A;  5MFP A;  4A3M L;  4U67 1;  3HOY L;  3RYG A;  2MS3 A;  3WWL A;  3RZT A;  5K2M E;  1TWG L;  5DM6 1;  3RZD L;  5IYB L;  4YWL A;  1Y1W L;  2XJP A;  3PKJ A;  1I50 L;  2APO B;  2C6B A;  1IW7 D;  1DX8 A;  5IP9 L;  2E2J L;  3QVD A;  5JVH 1;  3GTJ L;  5M5W L;  3HOV L;  3KYU A;  5EIN C;  3PKI A;  4A3B L;  4AI1 A;  1R9T L;  2AQC A;  2JA8 L;  5M5X L;  3S15 L;  3H3V M;  4TVM A;  1ZRP A;  1NXE A;  4A3G L;  5M5Y L;  4A93 L;  3GTK L;  2V3B B;  3S17 L;  1RDG A;  2A6E D;  1Y1V L;  3GTP L;  1BE7 A;  4UY8 1;  1OWC A;  1C09 A;  5JVG 1;  1I6H L;  5M3M L;  1S2Z A;  1YUX A;  3HKZ P;  3J7Y 1;  1VZI A;  4XXB B;  4BBS L;  1SMW A;  2VL6 A;  3PO3 L;  1LKM A;  1S30 A;  1Z92 B;  2JA5 L;  4E6Y A;  1VCX A;  4X6A L;  1PFV A;  1T9O A;  4V19 6;  2ZIX A;  3H9C A;  5GAD c;  2GMG A;  4C3H L;  1BQ9 A;  2E2I L;  3FKI L;  5MF6 A;  3KYW A;  2A6H D;  3K7A L;  4ZN3 B;  6RXN A;  3HOW L;  2NVY L;  4BXX L;  1QQT A;  1QCV A;  3ZG6 A;  4BBR L;  4A3D L;  1R0G A;  4GS7 D;  2C6A A;  1F4L A;  2B63 L;  1YV1 A;  2PVE A;  3H0G L;  3PZA A;  1B2O A;  1LKO A;  1BFY A;  2JA6 L;  3LWV B;  4YWM A;  4AR3 A;  2V0E A;  2XJU A;  4JAF A;  4AR5 A;  1R0H A;  3K35 A;  4A3F L;  2DSX A;  4C3J L;  1CAD A;  3H97 A;  1H7V A;  5M3F L;  2XJS A;  1R0F A;  2PVX A;  2A68 D;  3HJY B;  4AHZ A;  2V0F A;  2XJQ A;  4ZN1 B;  4TPU A;  5IY0 A;  2M4Y A;  1BQ8 A;  3PIO 1;  4B8C D;  1TWA L;  4AI2 A;  2XJV A;  3H99 A;  2A69 D;  2L0Z A;  3HOZ L;  4A3K L;  3MQK B;  3SS2 A;  3QQC E;  4LHN A;  1IU5 A;  2R92 L;  2R93 L;  2AUS B;  4RXN A;  3GTO L;  3S2H L;  5C4X L;  5MGN A;  3MPS A;  1PFY A;  1QYB A;  3GTL L;  1NXG A;  1LKP A;  1R0I A;  2KN9 A;  3KYV A;  2HR5 A;  4LHL A;  3HOU L;  1RYT A;  2JI3 A;  4JAG A;  3NFP I;  3P8B A;  4A3E L;  5C4J L;  3LWQ B;  3PWF A;  4WFN 1;  2WB1 P;  1TWC L;  4AR6 A;  1IRO A;  4AYB P;  4ME3 A;  5FJ8 L;  2KKD A;  5MLC 3;  3M4O L;  1BRF A;  2M6O A;  5RXN A;  3J7Z 1;  5IP7 L;  4A3C L;  2CKC A;  3A44 A;  2JI2 A;  4AHY A;  3RZO L;  2H12 A;  1DVB A;  3MSU A;  3M3Y L;  2B5I D;  3WWN B;  5IYC L;  3RZ6 A;  1RWD A;  2XJR A;  3HOX L;  2XJT A;  4G6B A;  2CKA A;  3PL5 A;  1R0J A;  7RXN A;  2NVQ L;  4QIW P;  3GTM L;  3S1M L;  1TWF L;  1VZH A;  1LTL A;  2Z3Q B;  2PYA A;  2BE5 D;  2JI1 A;  2K2D A;  3LWO B;  5AI2 A;  3LWR B;  3S2D L;  5AN9 H;  2PMZ P;  2R7Z L;  2RFK B;  2NYD A;  1TWH L;  3GTG L;  8RXN A;  2PPT A;  1CAA A;  4JAD A;  3S1R L;  1JYB A;  3GTQ L;  1I3Q L;  1B13 A;  2NVT L;  1ODH A;  4POF A;  2O5J D;  4C2M 1;  3B0A B;  1T9P A;  1SMM A;  1E8J A;  1FHH A;  5AI3 A;  1WJV A;  4AHW A;  3I4N L;  5DM7 1;  5H1S c;  3HJW B;  1RB9 A;  3IU3 I;  3S14 L;  5MFZ A;  2PSM C;  3PIP 1;  2EY4 E;  2CR8 A;  4AHX A;  2J9U B;  3I4M L;  2VUM L;  1VZG A;  5GAH c;  3JR7 A;  4A3J L;  2M4V A;  2JA7 L;  5FLM L;  5EIO C;  3KYY A;  2WAQ P;  3B08 B;  1WCM L;  1RDV A;  2Z3R B;  3FDJ A;  2M6P A;  3KYX A;  1IU6 A;  4A3L L;  1YK4 A;  1P7P A;  3LPE B;  2NVX L;  4Y7N L;  4K9F A;  3LNL A;  5C44 L;  4AI0 A;  2QL0 A;  1B71 A;  2YU9 L;  2RDV A;  1FHM A;  4Y52 L; 
#chains in the Genus database with same CATH homology
 4TVM A;  1BQ8 A;  3PIO 1;  4B8C D;  1ZRP A;  1B2J A;  1NXE A;  1VZH A;  3VPB E;  1S24 A;  1LTL A;  1YUZ A;  2Z3Q B;  2V3B B;  4JAE A;  4AI2 A;  2XJV A;  2PYA A;  1RDG A;  2BE5 D;  2A6E D;  2JI1 A;  1OWB A;  1BE7 A;  4UY8 1;  2A69 D;  2AYJ A;  2K2D A;  2L0Z A;  5AI2 A;  1OWC A;  4AI3 A;  5AN9 H;  3SS2 A;  2NYD A;  3QQC E;  4LHN A;  4POG A;  1C09 A;  5JVG 1;  1IU5 A;  8RXN A;  5GAG c;  1RYQ A;  1S2Z A;  1YUX A;  2PPT A;  4RXN A;  3J7Y 1;  2LCQ A;  1VZI A;  1SMU A;  1CAA A;  4JAD A;  4XXB B;  1JYB A;  1SMW A;  2VL6 A;  1LKM A;  1S30 A;  5MGN A;  1B13 A;  1T9Q A;  3MPS A;  1QYB A;  1Z92 B;  2ERJ A;  1NXG A;  1ODH A;  4E6Y A;  1VCX A;  1LKP A;  1R0I A;  2KN9 A;  4POF A;  5GAE c;  2O5J D;  3KYV A;  2HR5 A;  2ERS A;  4LHL A;  4XGH A;  3B0A B;  1IRN A;  1RYT A;  1T9P A;  4AR4 A;  2JI3 A;  1SMM A;  1T9O A;  4JAG A;  1E8J A;  1FHH A;  5AI3 A;  1WJV A;  4AHW A;  1YK5 A;  4V19 6;  2ZIX A;  3NFP I;  5DM7 1;  5GAD c;  5H1S c;  2GMG A;  3P8B A;  1BQ9 A;  1NNQ A;  3P2A A;  5MFP A;  1RB9 A;  3IU3 I;  5MF6 A;  4U67 1;  5MFZ A;  2PSM C;  3PIP 1;  3KYW A;  2A6H D;  2CR8 A;  4AHX A;  2J9U B;  3PWF A;  4WFN 1;  3RYG A;  4ZN3 B;  2MS3 A;  6RXN A;  3WWL A;  1VZG A;  3RZT A;  4AR6 A;  1IRO A;  5K2M E;  5GAH c;  1QCV A;  3ZG6 A;  2M4V A;  5DM6 1;  4ME3 A;  5EIO C;  2KKD A;  3KYY A;  5MLC 3;  1R0G A;  4YWL A;  4GS7 D;  2C6A A;  1BRF A;  2XJP A;  2M6O A;  3PKJ A;  5RXN A;  3J7Z 1;  3B08 B;  2C6B A;  2CKC A;  1IW7 D;  1YV1 A;  3A44 A;  4AR5 A;  1DX8 A;  2PVE A;  2JI2 A;  4AHY A;  3PZA A;  1RDV A;  2H12 A;  1B2O A;  1LKO A;  1DVB A;  1BFY A;  2Z3R B;  3QVD A;  2M6P A;  3KYX A;  5JVH 1;  3MSU A;  1IU6 A;  4YWM A;  1YK4 A;  2V0E A;  2XJU A;  3LPE B;  2B5I D;  4JAF A;  3WWN B;  1R0H A;  4AR3 A;  3RZ6 A;  3K35 A;  3KYU A;  2DSX A;  1RWD A;  3PKI A;  3LNL A;  4K9F A;  5EIN C;  1CAD A;  4AI1 A;  2XJR A;  1H7V A;  2XJS A;  1R0F A;  2XJT A;  4G6B A;  2CKA A;  2PVX A;  2A68 D;  4AI0 A;  2QL0 A;  4AHZ A;  2V0F A;  1R0J A;  7RXN A;  2XJQ A;  1B71 A;  4ZN1 B;  4TPU A;  2RDV A;  5IY0 A;  1FHM A;  2M4Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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