5GAOA

Head region of the yeast spliceosomal u4/u6.u5 tri-snrnp
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
255
structure length
255
Chain Sequence
SSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords Small nuclear ribonucleoprotein-associated protein B
publication title Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 angstrom resolution.
pubmed doi rcsb
total genus 51
structure length 255
sequence length 255
ec nomenclature
pdb deposition date 2015-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08084 PROCT PROCT (NUC072) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 5gaoA01
1AF2A 2O96A 2W4LA 4MSDA 4KITC 2RPZA 3DH1A 4QFTA 2ZNRA 1ZABA 4OWPB 3OJ6A 3SBGA 1OX7A 4HRWA 4WIFA 5M59B 2B3JA 2HVWA 4O8XB 3ZEFB 4LCNA 1WWRA 3DMOA 4LD4A 1VQ2A 1UAQA 2O95A 2Z3JA 3E1UA 3B8FA 4P9DA 3ZPGA 4EG2A 1ALNA 2G84A 3IJFX 4LCPA 4LCOA 2KKSA 4MSQA 4OWPA 1CTUA 4G3MA 1Z3AA 4PQTA 2QLCA 4OCNB 4I43B 4O8XA 4ZD4A 3OCQA 2Z3HA 3RZUA 3ZPCA 4F3WA 4O8YB 4MS7A 4WIGA 1WKQA 4P9CA 2HXVA 2PW9A 3MPZA 2KCQA 1RB7A 4OCLB 2G6VA 4MSJA 4K1RA 4HRQA 4ZFRA 3R2NA 4MSMA 4ZFTA 4LD2A 1YSBA 4OCMB 2D5NA 4OCNA 1OI0A 2NYTA 2O7PA 3RZVA 2OG4A 2Z3IA 5CW6A 4O8YA 2ZNVA 3G8QA 3EX8A 2B3ZA 4OCLA 1WN5A 2NX8A 2P8RA 2HVVA 4ILGC 2FR5A 1R5TA 1UX1A 1R5XA 1JTKA 4JXEA 4LC5A 1UWZA 4E0QA 2OBCA 1P6OA 2A8NA 2D30A 4OCMA 5M52C 4D10F 5C2OA 2Z3GA 1YSDA 1MQ0A 4BGDC 1CTTA 4ZD5A 4P9EA 5DCAJ 2O3KA 2P87A 1TIYA 2FR6A 4F7OA 1UX0A 5GAOA 1WN6A 4NQLA
chains in the Genus database with same CATH superfamily
1AF2A 2O96A 2W4LA 4MSDA 4KITC 2RPZA 3DH1A 4QFTA 2ZNRA 1ZABA 1PL0A 4OWPB 3OJ6A 3SBGA 1OX7A 4HRWA 4WIFA 2IU0A 5M59B 2B3JA 2HVWA 4O8XB 2IU3A 4LCNA 1WWRA 3ZEFB 3DMOA 4LD4A 1PKXA 1VQ2A 1UAQA 1THZA 2O95A 2Z3JA 3E1UA 4GGMX 3B8FA 4P9DA 3ZPGA 1M9NA 4EG2A 1ALNA 2G84A 1ZCZA 3IJFX 4LCPA 4LCOA 2KKSA 4MSQA 4OWPA 4A1OA 1CTUA 4G3MA 1Z3AA 4PQTA 2QLCA 4OCNB 1VK9A 4I43B 4O8XA 4ZD4A 3OCQA 2Z3HA 3RZUA 3ZPCA 4F3WA 4O8YB 4MS7A 4WIGA 1WKQA 4P9CA 2HXVA 2PW9A 3MPZA 2KCQA 1G8MA 1RB7A 4OCLB 2G6VA 4MSJA 4K1RA 4HRQA 4ZFRA 4J6EA 3R2NA 4MSMA 4ZFTA 4LD2A 1YSBA 4OCMB 2D5NA 4OCNA 1OI0A 2NYTA 3BH1A 2O7PA 3RZVA 2OG4A 2Z3IA 5CW6A 4O8YA 2ZNVA 3G8QA 3EX8A 1OZ0A 2B3ZA 4OCLA 1WN5A 2NX8A 2P8RA 4EHIA 2HVVA 4ILGC 2FR5A 2B1GA 1R5TA 1UX1A 1WN6A 3VX8A 1R5XA 1JTKA 4JXEA 4LC5A 1UWZA 4E0QA 3ZZMA 2OBCA 1P6OA 2A8NA 2D30A 4OCMA 5M52C 4D10F 2B1IA 5C2OA 2Z3GA 1YSDA 1MQ0A 4BGDC 1CTTA 4ZD5A 4P9EA 5DCAJ 2O3KA 2P87A 1TIYA 2FR6A 4F7OA 1UX0A 5GAOA 1P4RA 4NQLA
chains in the Genus database with same CATH topology
1AF2A 2O96A 2W4LA 4MSDA 4KITC 2RPZA 3DH1A 4QFTA 2ZNRA 1ZABA 4OWPB 3OJ6A 3SBGA 1OX7A 4HRWA 4WIFA 5M59B 2B3JA 2HVWA 4O8XB 3ZEFB 4LCNA 1WWRA 3DMOA 4LD4A 1VQ2A 1UAQA 2O95A 2Z3JA 3E1UA 3B8FA 4P9DA 3ZPGA 4EG2A 1ALNA 2G84A 3IJFX 4LCPA 4LCOA 2KKSA 4MSQA 4OWPA 1CTUA 4G3MA 1Z3AA 4PQTA 2QLCA 4OCNB 4I43B 4O8XA 4ZD4A 3OCQA 2Z3HA 3RZUA 3ZPCA 4F3WA 4O8YB 4MS7A 4WIGA 1WKQA 4P9CA 2HXVA 2PW9A 3MPZA 2KCQA 1RB7A 4OCLB 2G6VA 4MSJA 4K1RA 4HRQA 4ZFRA 3R2NA 4MSMA 4ZFTA 4LD2A 1YSBA 4OCMB 2D5NA 4OCNA 1OI0A 2NYTA 2O7PA 3RZVA 2OG4A 2Z3IA 5CW6A 4O8YA 2ZNVA 3G8QA 3EX8A 2B3ZA 4OCLA 1WN5A 2NX8A 2P8RA 2HVVA 4ILGC 2FR5A 1R5TA 1UX1A 1R5XA 1JTKA 4JXEA 4LC5A 1UWZA 4E0QA 2OBCA 1P6OA 2A8NA 2D30A 4OCMA 5M52C 4D10F 5C2OA 2Z3GA 1YSDA 1MQ0A 4BGDC 1CTTA 4ZD5A 4P9EA 5DCAJ 2O3KA 2P87A 1TIYA 2FR6A 4F7OA 1UX0A 5GAOA 1WN6A 4NQLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AF2 A;  2O96 A;  2W4L A;  4MSD A;  4KIT C;  2RPZ A;  3DH1 A;  4QFT A;  2ZNR A;  1ZAB A;  4OWP B;  3OJ6 A;  3SBG A;  1OX7 A;  4HRW A;  4WIF A;  5M59 B;  2B3J A;  2HVW A;  4O8X B;  3ZEF B;  4LCN A;  1WWR A;  3DMO A;  4LD4 A;  1VQ2 A;  1UAQ A;  2O95 A;  2Z3J A;  3E1U A;  3B8F A;  4P9D A;  3ZPG A;  4EG2 A;  1ALN A;  2G84 A;  3IJF X;  4LCP A;  4LCO A;  2KKS A;  4MSQ A;  4OWP A;  1CTU A;  4G3M A;  1Z3A A;  4PQT A;  2QLC A;  4OCN B;  4I43 B;  4O8X A;  4ZD4 A;  3OCQ A;  2Z3H A;  3RZU A;  3ZPC A;  4F3W A;  4O8Y B;  4MS7 A;  4WIG A;  1WKQ A;  4P9C A;  2HXV A;  2PW9 A;  3MPZ A;  2KCQ A;  1RB7 A;  4OCL B;  2G6V A;  4MSJ A;  4K1R A;  4HRQ A;  4ZFR A;  3R2N A;  4MSM A;  4ZFT A;  4LD2 A;  1YSB A;  4OCM B;  2D5N A;  4OCN A;  1OI0 A;  2NYT A;  2O7P A;  3RZV A;  2OG4 A;  2Z3I A;  5CW6 A;  4O8Y A;  2ZNV A;  3G8Q A;  3EX8 A;  2B3Z A;  4OCL A;  1WN5 A;  2NX8 A;  2P8R A;  2HVV A;  4ILG C;  2FR5 A;  1R5T A;  1UX1 A;  1R5X A;  1JTK A;  4JXE A;  4LC5 A;  1UWZ A;  4E0Q A;  2OBC A;  1P6O A;  2A8N A;  2D30 A;  4OCM A;  5M52 C;  4D10 F;  5C2O A;  2Z3G A;  1YSD A;  1MQ0 A;  4BGD C;  1CTT A;  4ZD5 A;  4P9E A;  5DCA J;  2O3K A;  2P87 A;  1TIY A;  2FR6 A;  4F7O A;  1UX0 A;  5GAO A;  1WN6 A;  4NQL A; 
#chains in the Genus database with same CATH topology
 1AF2 A;  2O96 A;  2W4L A;  4MSD A;  4KIT C;  2RPZ A;  3DH1 A;  4QFT A;  2ZNR A;  1ZAB A;  1PL0 A;  4OWP B;  3OJ6 A;  3SBG A;  1OX7 A;  4HRW A;  4WIF A;  2IU0 A;  5M59 B;  2B3J A;  2HVW A;  4O8X B;  2IU3 A;  4LCN A;  1WWR A;  3ZEF B;  3DMO A;  4LD4 A;  1PKX A;  1VQ2 A;  1UAQ A;  1THZ A;  2O95 A;  2Z3J A;  3E1U A;  4GGM X;  3B8F A;  4P9D A;  3ZPG A;  1M9N A;  4EG2 A;  1ALN A;  2G84 A;  1ZCZ A;  3IJF X;  4LCP A;  4LCO A;  2KKS A;  4MSQ A;  4OWP A;  4A1O A;  1CTU A;  4G3M A;  1Z3A A;  4PQT A;  2QLC A;  4OCN B;  1VK9 A;  4I43 B;  4O8X A;  4ZD4 A;  3OCQ A;  2Z3H A;  3RZU A;  3ZPC A;  4F3W A;  4O8Y B;  4MS7 A;  4WIG A;  1WKQ A;  4P9C A;  2HXV A;  2PW9 A;  3MPZ A;  2KCQ A;  1G8M A;  1RB7 A;  4OCL B;  2G6V A;  4MSJ A;  4K1R A;  4HRQ A;  4ZFR A;  4J6E A;  3R2N A;  4MSM A;  4ZFT A;  4LD2 A;  1YSB A;  4OCM B;  2D5N A;  4OCN A;  1OI0 A;  2NYT A;  3BH1 A;  2O7P A;  3RZV A;  2OG4 A;  2Z3I A;  5CW6 A;  4O8Y A;  2ZNV A;  3G8Q A;  3EX8 A;  1OZ0 A;  2B3Z A;  4OCL A;  1WN5 A;  2NX8 A;  2P8R A;  4EHI A;  2HVV A;  4ILG C;  2FR5 A;  2B1G A;  1R5T A;  1UX1 A;  1WN6 A;  3VX8 A;  1R5X A;  1JTK A;  4JXE A;  4LC5 A;  1UWZ A;  4E0Q A;  3ZZM A;  2OBC A;  1P6O A;  2A8N A;  2D30 A;  4OCM A;  5M52 C;  4D10 F;  2B1I A;  5C2O A;  2Z3G A;  1YSD A;  1MQ0 A;  4BGD C;  1CTT A;  4ZD5 A;  4P9E A;  5DCA J;  2O3K A;  2P87 A;  1TIY A;  2FR6 A;  4F7O A;  1UX0 A;  5GAO A;  1P4R A;  4NQL A; 
#chains in the Genus database with same CATH homology
 1AF2 A;  2O96 A;  2W4L A;  4MSD A;  4KIT C;  2RPZ A;  3DH1 A;  4QFT A;  2ZNR A;  1ZAB A;  4OWP B;  3OJ6 A;  3SBG A;  1OX7 A;  4HRW A;  4WIF A;  5M59 B;  2B3J A;  2HVW A;  4O8X B;  3ZEF B;  4LCN A;  1WWR A;  3DMO A;  4LD4 A;  1VQ2 A;  1UAQ A;  2O95 A;  2Z3J A;  3E1U A;  3B8F A;  4P9D A;  3ZPG A;  4EG2 A;  1ALN A;  2G84 A;  3IJF X;  4LCP A;  4LCO A;  2KKS A;  4MSQ A;  4OWP A;  1CTU A;  4G3M A;  1Z3A A;  4PQT A;  2QLC A;  4OCN B;  4I43 B;  4O8X A;  4ZD4 A;  3OCQ A;  2Z3H A;  3RZU A;  3ZPC A;  4F3W A;  4O8Y B;  4MS7 A;  4WIG A;  1WKQ A;  4P9C A;  2HXV A;  2PW9 A;  3MPZ A;  2KCQ A;  1RB7 A;  4OCL B;  2G6V A;  4MSJ A;  4K1R A;  4HRQ A;  4ZFR A;  3R2N A;  4MSM A;  4ZFT A;  4LD2 A;  1YSB A;  4OCM B;  2D5N A;  4OCN A;  1OI0 A;  2NYT A;  2O7P A;  3RZV A;  2OG4 A;  2Z3I A;  5CW6 A;  4O8Y A;  2ZNV A;  3G8Q A;  3EX8 A;  2B3Z A;  4OCL A;  1WN5 A;  2NX8 A;  2P8R A;  2HVV A;  4ILG C;  2FR5 A;  1R5T A;  1UX1 A;  1R5X A;  1JTK A;  4JXE A;  4LC5 A;  1UWZ A;  4E0Q A;  2OBC A;  1P6O A;  2A8N A;  2D30 A;  4OCM A;  5M52 C;  4D10 F;  5C2O A;  2Z3G A;  1YSD A;  1MQ0 A;  4BGD C;  1CTT A;  4ZD5 A;  4P9E A;  5DCA J;  2O3K A;  2P87 A;  1TIY A;  2FR6 A;  4F7O A;  1UX0 A;  5GAO A;  1WN6 A;  4NQL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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