5GEPA

Sulfite reductase hemoprotein carbon monoxide complex reduced with crii edta
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
490
structure length
456
Chain Sequence
b'LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SULFITE REDUCTASE HEMOPROTEIN
publication title Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 157
structure length 456
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 5gepA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 5gepA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 5gepA02
4S3DA 6GEPA 4S39A 4AOPA 2V4JB 3VKTA 5AOPA 3VKQA 4S3AA 1AOPA 3MM9A 3VLXA 2XSJA 3MM8B 2AKJA 4S3BA 4S3CA 3AOPA 3VKPA 3VM1A 3MM6A 3MMAA 3VM0A 3MMCA 1ZJ8A 5GEPA 3B0MA 3MM5A 3OR1B 3NOYA 3OR2A 4G38A 4GEPA 3MM7A 3MMBB 3MMBA 2Y0FA 3GEOA 4S23A 3VKRA 2AOPA 7GEPA 4S3FA 1ZJ9A 3B0HA 2V4JA 2XSJB 3MM9B 3VLYA 3B0LA 3VKSA 3MM6B 2GEPA 4G9PA 3VLZA 3MM8A 3MMAB 4G39A 3MM5B 3MMCB 4S38A 4S3EA 8GEPA 3B0GA 3MM7B 3OR2B 3B0NA 3OR1A 3B0JA 4HTRA
chains in the Genus database with same CATH superfamily
4S3DA 6GEPA 4S39A 4AOPA 2V4JB 3VKTA 5AOPA 3VKQA 4S3AA 1AOPA 3MM9A 3VLXA 2XSJA 3MM8B 2AKJA 4S3BA 4S3CA 3AOPA 3VKPA 3VM1A 3MM6A 3MMAA 3VM0A 3MMCA 1ZJ8A 5GEPA 3B0MA 3MM5A 3OR1B 3NOYA 3OR2A 4G38A 4GEPA 3MM7A 3MMBB 3MMBA 2Y0FA 3GEOA 4S23A 3VKRA 2AOPA 7GEPA 4S3FA 1ZJ9A 3B0HA 2V4JA 2XSJB 3MM9B 3VLYA 3B0LA 3VKSA 3MM6B 2GEPA 4G9PA 3VLZA 3MM8A 3MMAB 4G39A 3MM5B 3MMCB 4S38A 4S3EA 8GEPA 3B0GA 3MM7B 3OR2B 3B0NA 3OR1A 3B0JA 4HTRA
chains in the Genus database with same CATH topology
4S3DA 6GEPA 4S39A 4AOPA 2V4JB 3VKTA 5AOPA 3VKQA 4S3AA 1AOPA 3MM9A 3VLXA 2XSJA 3MM8B 2AKJA 4S3BA 4S3CA 3AOPA 3VKPA 3VM1A 3MM6A 3MMAA 3VM0A 3MMCA 1ZJ8A 5GEPA 3B0MA 3MM5A 3OR1B 3NOYA 3OR2A 4G38A 4GEPA 3MM7A 3MMBB 3MMBA 2Y0FA 3GEOA 4S23A 3VKRA 2AOPA 7GEPA 4S3FA 1ZJ9A 3B0HA 2V4JA 2XSJB 3MM9B 3VLYA 3B0LA 3VKSA 3MM6B 2GEPA 4G9PA 3VLZA 3MM8A 3MMAB 4G39A 3MM5B 3MMCB 4S38A 4S3EA 8GEPA 3B0GA 3MM7B 3OR2B 3B0NA 3OR1A 3B0JA 4HTRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4S3D A;  6GEP A;  4S39 A;  4AOP A;  2V4J B;  3VKT A;  5AOP A;  3VKQ A;  4S3A A;  1AOP A;  3MM9 A;  3VLX A;  2XSJ A;  3MM8 B;  2AKJ A;  4S3B A;  4S3C A;  3AOP A;  3VKP A;  3VM1 A;  3MM6 A;  3MMA A;  3VM0 A;  3MMC A;  1ZJ8 A;  5GEP A;  3B0M A;  3MM5 A;  3OR1 B;  3NOY A;  3OR2 A;  4G38 A;  4GEP A;  3MM7 A;  3MMB B;  3MMB A;  2Y0F A;  3GEO A;  4S23 A;  3VKR A;  2AOP A;  7GEP A;  4S3F A;  1ZJ9 A;  3B0H A;  2V4J A;  2XSJ B;  3MM9 B;  3VLY A;  3B0L A;  3VKS A;  3MM6 B;  2GEP A;  4G9P A;  3VLZ A;  3MM8 A;  3MMA B;  4G39 A;  3MM5 B;  3MMC B;  4S38 A;  4S3E A;  8GEP A;  3B0G A;  3MM7 B;  3OR2 B;  3B0N A;  3OR1 A;  3B0J A;  4HTR A; 
#chains in the Genus database with same CATH topology
 4S3D A;  6GEP A;  4S39 A;  4AOP A;  2V4J B;  3VKT A;  5AOP A;  3VKQ A;  4S3A A;  1AOP A;  3MM9 A;  3VLX A;  2XSJ A;  3MM8 B;  2AKJ A;  4S3B A;  4S3C A;  3AOP A;  3VKP A;  3VM1 A;  3MM6 A;  3MMA A;  3VM0 A;  3MMC A;  1ZJ8 A;  5GEP A;  3B0M A;  3MM5 A;  3OR1 B;  3NOY A;  3OR2 A;  4G38 A;  4GEP A;  3MM7 A;  3MMB B;  3MMB A;  2Y0F A;  3GEO A;  4S23 A;  3VKR A;  2AOP A;  7GEP A;  4S3F A;  1ZJ9 A;  3B0H A;  2V4J A;  2XSJ B;  3MM9 B;  3VLY A;  3B0L A;  3VKS A;  3MM6 B;  2GEP A;  4G9P A;  3VLZ A;  3MM8 A;  3MMA B;  4G39 A;  3MM5 B;  3MMC B;  4S38 A;  4S3E A;  8GEP A;  3B0G A;  3MM7 B;  3OR2 B;  3B0N A;  3OR1 A;  3B0J A;  4HTR A; 
#chains in the Genus database with same CATH homology
 4S3D A;  6GEP A;  4S39 A;  4AOP A;  2V4J B;  3VKT A;  5AOP A;  3VKQ A;  4S3A A;  1AOP A;  3MM9 A;  3VLX A;  2XSJ A;  3MM8 B;  2AKJ A;  4S3B A;  4S3C A;  3AOP A;  3VKP A;  3VM1 A;  3MM6 A;  3MMA A;  3VM0 A;  3MMC A;  1ZJ8 A;  5GEP A;  3B0M A;  3MM5 A;  3OR1 B;  3NOY A;  3OR2 A;  4G38 A;  4GEP A;  3MM7 A;  3MMB B;  3MMB A;  2Y0F A;  3GEO A;  4S23 A;  3VKR A;  2AOP A;  7GEP A;  4S3F A;  1ZJ9 A;  3B0H A;  2V4J A;  2XSJ B;  3MM9 B;  3VLY A;  3B0L A;  3VKS A;  3MM6 B;  2GEP A;  4G9P A;  3VLZ A;  3MM8 A;  3MMA B;  4G39 A;  3MM5 B;  3MMC B;  4S38 A;  4S3E A;  8GEP A;  3B0G A;  3MM7 B;  3OR2 B;  3B0N A;  3OR1 A;  3B0J A;  4HTR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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