5GEPA

Sulfite reductase hemoprotein carbon monoxide complex reduced with crii edta
Total Genus 157
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
490
structure length
456
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords SULFITE REDUCTASE HEMOPROTEIN
publication title Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
pubmed doi rcsb
source organism Escherichia coli
total genus 157
structure length 456
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 5gepA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 5gepA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 5gepA02
4G39A 3VKQA 3MM6A 3MM7B 2Y0FA 3MMCA 3MMAA 3VM1A 3VKPA 3NOYA 3MM9B 3MM5A 4S3CA 4S3AA 4G9PA 4S3EA 2AKJA 3MM8B 2XSJB 3OR2A 3OR1B 4S3BA 3B0GA 4G38A 4S3FA 5GEPA 3VM0A 4AOPA 3B0NA 2V4JA 3MMBB 3VKTA 3VKRA 3VLZA 3MM7A 4S3DA 2GEPA 3GEOA 8GEPA 1AOPA 2AOPA 5AOPA 3MM6B 1ZJ9A 3MM9A 3B0LA 3B0MA 3MMCB 3MM8A 4HTRA 3MMAB 1ZJ8A 3OR1A 2XSJA 3MM5B 4GEPA 4S39A 3VLXA 6GEPA 4S23A 3B0HA 3MMBA 3B0JA 3OR2B 3AOPA 4S38A 3VKSA 3VLYA 7GEPA 2V4JB
chains in the Genus database with same CATH superfamily
4G39A 3VKQA 3MM6A 3MM7B 2Y0FA 3MMCA 3MMAA 3VM1A 3VKPA 3NOYA 3MM9B 3MM5A 4S3CA 4S3AA 4G9PA 4S3EA 2AKJA 3MM8B 2XSJB 3OR2A 3OR1B 4S3BA 3B0GA 4G38A 4S3FA 5GEPA 3VM0A 4AOPA 3B0NA 2V4JA 3MMBB 3VKTA 3VKRA 3VLZA 3MM7A 4S3DA 2GEPA 3GEOA 8GEPA 1AOPA 2AOPA 5AOPA 3MM6B 1ZJ9A 3MM9A 3B0LA 3B0MA 3MMCB 3MM8A 4HTRA 3MMAB 1ZJ8A 3OR1A 2XSJA 3MM5B 4GEPA 4S39A 3VLXA 6GEPA 4S23A 3B0HA 3MMBA 3B0JA 3OR2B 3AOPA 4S38A 3VKSA 3VLYA 7GEPA 2V4JB
chains in the Genus database with same CATH topology
4G39A 3VKQA 3MM6A 3MM7B 2Y0FA 3MMCA 3MMAA 3VM1A 3VKPA 3NOYA 3MM9B 3MM5A 4S3CA 4S3AA 4G9PA 4S3EA 2AKJA 3MM8B 2XSJB 3OR2A 3OR1B 4S3BA 3B0GA 4G38A 4S3FA 5GEPA 3VM0A 4AOPA 3B0NA 2V4JA 3MMBB 3VKTA 3VKRA 3VLZA 3MM7A 4S3DA 2GEPA 3GEOA 8GEPA 1AOPA 2AOPA 5AOPA 3MM6B 1ZJ9A 3MM9A 3B0LA 3B0MA 3MMCB 3MM8A 4HTRA 3MMAB 1ZJ8A 3OR1A 2XSJA 3MM5B 4GEPA 4S39A 3VLXA 6GEPA 4S23A 3B0HA 3MMBA 3B0JA 3OR2B 3AOPA 4S38A 3VKSA 3VLYA 7GEPA 2V4JB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G39 A;  3VKQ A;  3MM6 A;  3MM7 B;  2Y0F A;  3MMC A;  3MMA A;  3VM1 A;  3VKP A;  3NOY A;  3MM9 B;  3MM5 A;  4S3C A;  4S3A A;  4G9P A;  4S3E A;  2AKJ A;  3MM8 B;  2XSJ B;  3OR2 A;  3OR1 B;  4S3B A;  3B0G A;  4G38 A;  4S3F A;  5GEP A;  3VM0 A;  4AOP A;  3B0N A;  2V4J A;  3MMB B;  3VKT A;  3VKR A;  3VLZ A;  3MM7 A;  4S3D A;  2GEP A;  3GEO A;  8GEP A;  1AOP A;  2AOP A;  5AOP A;  3MM6 B;  1ZJ9 A;  3MM9 A;  3B0L A;  3B0M A;  3MMC B;  3MM8 A;  4HTR A;  3MMA B;  1ZJ8 A;  3OR1 A;  2XSJ A;  3MM5 B;  4GEP A;  4S39 A;  3VLX A;  6GEP A;  4S23 A;  3B0H A;  3MMB A;  3B0J A;  3OR2 B;  3AOP A;  4S38 A;  3VKS A;  3VLY A;  7GEP A;  2V4J B; 
#chains in the Genus database with same CATH topology
 4G39 A;  3VKQ A;  3MM6 A;  3MM7 B;  2Y0F A;  3MMC A;  3MMA A;  3VM1 A;  3VKP A;  3NOY A;  3MM9 B;  3MM5 A;  4S3C A;  4S3A A;  4G9P A;  4S3E A;  2AKJ A;  3MM8 B;  2XSJ B;  3OR2 A;  3OR1 B;  4S3B A;  3B0G A;  4G38 A;  4S3F A;  5GEP A;  3VM0 A;  4AOP A;  3B0N A;  2V4J A;  3MMB B;  3VKT A;  3VKR A;  3VLZ A;  3MM7 A;  4S3D A;  2GEP A;  3GEO A;  8GEP A;  1AOP A;  2AOP A;  5AOP A;  3MM6 B;  1ZJ9 A;  3MM9 A;  3B0L A;  3B0M A;  3MMC B;  3MM8 A;  4HTR A;  3MMA B;  1ZJ8 A;  3OR1 A;  2XSJ A;  3MM5 B;  4GEP A;  4S39 A;  3VLX A;  6GEP A;  4S23 A;  3B0H A;  3MMB A;  3B0J A;  3OR2 B;  3AOP A;  4S38 A;  3VKS A;  3VLY A;  7GEP A;  2V4J B; 
#chains in the Genus database with same CATH homology
 4G39 A;  3VKQ A;  3MM6 A;  3MM7 B;  2Y0F A;  3MMC A;  3MMA A;  3VM1 A;  3VKP A;  3NOY A;  3MM9 B;  3MM5 A;  4S3C A;  4S3A A;  4G9P A;  4S3E A;  2AKJ A;  3MM8 B;  2XSJ B;  3OR2 A;  3OR1 B;  4S3B A;  3B0G A;  4G38 A;  4S3F A;  5GEP A;  3VM0 A;  4AOP A;  3B0N A;  2V4J A;  3MMB B;  3VKT A;  3VKR A;  3VLZ A;  3MM7 A;  4S3D A;  2GEP A;  3GEO A;  8GEP A;  1AOP A;  2AOP A;  5AOP A;  3MM6 B;  1ZJ9 A;  3MM9 A;  3B0L A;  3B0M A;  3MMC B;  3MM8 A;  4HTR A;  3MMA B;  1ZJ8 A;  3OR1 A;  2XSJ A;  3MM5 B;  4GEP A;  4S39 A;  3VLX A;  6GEP A;  4S23 A;  3B0H A;  3MMB A;  3B0J A;  3OR2 B;  3AOP A;  4S38 A;  3VKS A;  3VLY A;  7GEP A;  2V4J B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...