5GEPA

Sulfite reductase hemoprotein carbon monoxide complex reduced with crii edta
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
490
structure length
456
Chain Sequence
LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SULFITE REDUCTASE HEMOPROTEIN
publication title Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 157
structure length 456
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 5gepA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 5gepA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 5gepA02
3B0MA 4S3FA 2V4JA 3MMAB 4G38A 6GEPA 3MM9A 2AKJA 2GEPA 1ZJ9A 2XSJB 4S23A 7GEPA 2V4JB 3VKTA 3VM0A 4S3BA 3MM9B 4AOPA 3OR1A 4S38A 5GEPA 3MM8B 5AOPA 2Y0FA 3MMCA 3B0NA 3VKSA 4G9PA 3OR1B 3NOYA 3MMBA 4S3EA 3MM5A 3OR2A 3B0LA 4GEPA 3VLZA 4G39A 4S39A 3MMCB 3VKQA 3VM1A 3VKRA 3VKPA 4HTRA 1AOPA 3MMBB 3AOPA 3MM6A 3VLYA 3GEOA 4S3DA 8GEPA 3MM5B 3MM8A 3MM7A 3OR2B 2AOPA 4S3CA 1ZJ8A 3B0GA 3B0HA 3MMAA 3VLXA 3MM6B 3B0JA 2XSJA 3MM7B 4S3AA
chains in the Genus database with same CATH superfamily
3B0MA 4S3FA 2V4JA 3MMAB 4G38A 6GEPA 3MM9A 2AKJA 2GEPA 1ZJ9A 2XSJB 4S23A 7GEPA 2V4JB 3VKTA 3VM0A 4S3BA 3MM9B 4AOPA 3OR1A 4S38A 5GEPA 3MM8B 5AOPA 2Y0FA 3MMCA 3B0NA 3VKSA 4G9PA 3OR1B 3NOYA 3MMBA 4S3EA 3MM5A 3OR2A 3B0LA 4GEPA 3VLZA 4G39A 4S39A 3MMCB 3VKQA 3VM1A 3VKRA 3VKPA 4HTRA 1AOPA 3MMBB 3AOPA 3MM6A 3VLYA 3GEOA 4S3DA 8GEPA 3MM5B 3MM8A 3MM7A 3OR2B 2AOPA 4S3CA 1ZJ8A 3B0GA 3B0HA 3MMAA 3VLXA 3MM6B 3B0JA 2XSJA 3MM7B 4S3AA
chains in the Genus database with same CATH topology
3B0MA 4S3FA 2V4JA 3MMAB 4G38A 6GEPA 3MM9A 2AKJA 2GEPA 1ZJ9A 2XSJB 4S23A 7GEPA 2V4JB 3VKTA 3VM0A 4S3BA 3MM9B 4AOPA 3OR1A 4S38A 5GEPA 3MM8B 5AOPA 2Y0FA 3MMCA 3B0NA 3VKSA 4G9PA 3OR1B 3NOYA 3MMBA 4S3EA 3MM5A 3OR2A 3B0LA 4GEPA 3VLZA 4G39A 4S39A 3MMCB 3VKQA 3VM1A 3VKRA 3VKPA 4HTRA 1AOPA 3MMBB 3AOPA 3MM6A 3VLYA 3GEOA 4S3DA 8GEPA 3MM5B 3MM8A 3MM7A 3OR2B 2AOPA 4S3CA 1ZJ8A 3B0GA 3B0HA 3MMAA 3VLXA 3MM6B 3B0JA 2XSJA 3MM7B 4S3AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B0M A;  4S3F A;  2V4J A;  3MMA B;  4G38 A;  6GEP A;  3MM9 A;  2AKJ A;  2GEP A;  1ZJ9 A;  2XSJ B;  4S23 A;  7GEP A;  2V4J B;  3VKT A;  3VM0 A;  4S3B A;  3MM9 B;  4AOP A;  3OR1 A;  4S38 A;  5GEP A;  3MM8 B;  5AOP A;  2Y0F A;  3MMC A;  3B0N A;  3VKS A;  4G9P A;  3OR1 B;  3NOY A;  3MMB A;  4S3E A;  3MM5 A;  3OR2 A;  3B0L A;  4GEP A;  3VLZ A;  4G39 A;  4S39 A;  3MMC B;  3VKQ A;  3VM1 A;  3VKR A;  3VKP A;  4HTR A;  1AOP A;  3MMB B;  3AOP A;  3MM6 A;  3VLY A;  3GEO A;  4S3D A;  8GEP A;  3MM5 B;  3MM8 A;  3MM7 A;  3OR2 B;  2AOP A;  4S3C A;  1ZJ8 A;  3B0G A;  3B0H A;  3MMA A;  3VLX A;  3MM6 B;  3B0J A;  2XSJ A;  3MM7 B;  4S3A A; 
#chains in the Genus database with same CATH topology
 3B0M A;  4S3F A;  2V4J A;  3MMA B;  4G38 A;  6GEP A;  3MM9 A;  2AKJ A;  2GEP A;  1ZJ9 A;  2XSJ B;  4S23 A;  7GEP A;  2V4J B;  3VKT A;  3VM0 A;  4S3B A;  3MM9 B;  4AOP A;  3OR1 A;  4S38 A;  5GEP A;  3MM8 B;  5AOP A;  2Y0F A;  3MMC A;  3B0N A;  3VKS A;  4G9P A;  3OR1 B;  3NOY A;  3MMB A;  4S3E A;  3MM5 A;  3OR2 A;  3B0L A;  4GEP A;  3VLZ A;  4G39 A;  4S39 A;  3MMC B;  3VKQ A;  3VM1 A;  3VKR A;  3VKP A;  4HTR A;  1AOP A;  3MMB B;  3AOP A;  3MM6 A;  3VLY A;  3GEO A;  4S3D A;  8GEP A;  3MM5 B;  3MM8 A;  3MM7 A;  3OR2 B;  2AOP A;  4S3C A;  1ZJ8 A;  3B0G A;  3B0H A;  3MMA A;  3VLX A;  3MM6 B;  3B0J A;  2XSJ A;  3MM7 B;  4S3A A; 
#chains in the Genus database with same CATH homology
 3B0M A;  4S3F A;  2V4J A;  3MMA B;  4G38 A;  6GEP A;  3MM9 A;  2AKJ A;  2GEP A;  1ZJ9 A;  2XSJ B;  4S23 A;  7GEP A;  2V4J B;  3VKT A;  3VM0 A;  4S3B A;  3MM9 B;  4AOP A;  3OR1 A;  4S38 A;  5GEP A;  3MM8 B;  5AOP A;  2Y0F A;  3MMC A;  3B0N A;  3VKS A;  4G9P A;  3OR1 B;  3NOY A;  3MMB A;  4S3E A;  3MM5 A;  3OR2 A;  3B0L A;  4GEP A;  3VLZ A;  4G39 A;  4S39 A;  3MMC B;  3VKQ A;  3VM1 A;  3VKR A;  3VKP A;  4HTR A;  1AOP A;  3MMB B;  3AOP A;  3MM6 A;  3VLY A;  3GEO A;  4S3D A;  8GEP A;  3MM5 B;  3MM8 A;  3MM7 A;  3OR2 B;  2AOP A;  4S3C A;  1ZJ8 A;  3B0G A;  3B0H A;  3MMA A;  3VLX A;  3MM6 B;  3B0J A;  2XSJ A;  3MM7 B;  4S3A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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