5GL4A

Crystal structure of ton_0340 in complex with mn
Total Genus 96
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
269
structure length
269
Chain Sequence
b'MIAHLINTDIGNRGVLKVYLDYRRKNFNFLHNSTKMFLDNLERVLIVTGFPIPPMMVAETDGPPGALAIYRAVEMLGGKAEILTYSEVEKALEPFGVSLARTPEPEDYSLIISVETPGRAADGRYYSMSALEIKRDPLDGIFLKARALGIPTIGVGDGGNEIGMGKIRELVVGHVPHGEKIASVVETDELIVSAVSNWGAYGLVAQASIEVGRNLLEGWDERRVIEAISSAGLIDGVSKTLAPSVDGIRLMVHEGIVELLKAVVDEAIL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Uncharacterized protein
publication title Identification of a Highly Conserved Hypothetical Protein TON_0340 as a Probable Manganese-Dependent Phosphatase.
pubmed doi rcsb
source organism Thermococcus onnurineus (strain na1)
molecule tags Unknown function
total genus 96
structure length 269
sequence length 269
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2016-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14336 DUF4392 Domain of unknown function (DUF4392)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1640.20 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 5gl4A00
5GKXA 5GL4A 4DWZA 5GL3A 5GL2A 4FC5A
chains in the Genus database with same CATH superfamily
5GL4A 4DWZA 1K23A 2ZXOA 1K20A 4FC5A 1IR6A 4RPAA 1WPPA 2QB6A 2QB8A 2ZXRA 3W5WA 3DEVA 1WPMA 2QB7A 2HAWA 2ENXA 2EB0A 5GKXA 2IW4A 5GL3A 4LS9A 5GL2A 1I74A 4PY9A 1WPNA 2ZXPA
chains in the Genus database with same CATH topology
5GL4A 4DWZA 1K23A 2ZXOA 1K20A 4FC5A 1IR6A 4RPAA 1WPPA 2QB6A 2QB8A 2ZXRA 3W5WA 3DEVA 1WPMA 2QB7A 2HAWA 2ENXA 2EB0A 5GKXA 2IW4A 5GL3A 4LS9A 5GL2A 1I74A 4PY9A 1WPNA 2ZXPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GKX A;  5GL4 A;  4DWZ A;  5GL3 A;  5GL2 A;  4FC5 A; 
#chains in the Genus database with same CATH topology
 5GL4 A;  4DWZ A;  1K23 A;  2ZXO A;  1K20 A;  4FC5 A;  1IR6 A;  4RPA A;  1WPP A;  2QB6 A;  2QB8 A;  2ZXR A;  3W5W A;  3DEV A;  1WPM A;  2QB7 A;  2HAW A;  2ENX A;  2EB0 A;  5GKX A;  2IW4 A;  5GL3 A;  4LS9 A;  5GL2 A;  1I74 A;  4PY9 A;  1WPN A;  2ZXP A; 
#chains in the Genus database with same CATH homology
 5GL4 A;  4DWZ A;  1K23 A;  2ZXO A;  1K20 A;  4FC5 A;  1IR6 A;  4RPA A;  1WPP A;  2QB6 A;  2QB8 A;  2ZXR A;  3W5W A;  3DEV A;  1WPM A;  2QB7 A;  2HAW A;  2ENX A;  2EB0 A;  5GKX A;  2IW4 A;  5GL3 A;  4LS9 A;  5GL2 A;  1I74 A;  4PY9 A;  1WPN A;  2ZXP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...