5GL4A

Crystal structure of ton_0340 in complex with mn
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
269
structure length
269
Chain Sequence
MIAHLINTDIGNRGVLKVYLDYRRKNFNFLHNSTKMFLDNLERVLIVTGFPIPPMMVAETDGPPGALAIYRAVEMLGGKAEILTYSEVEKALEPFGVSLARTPEPEDYSLIISVETPGRAADGRYYSMSALEIKRDPLDGIFLKARALGIPTIGVGDGGNEIGMGKIRELVVGHVPHGEKIASVVETDELIVSAVSNWGAYGLVAQASIEVGRNLLEGWDERRVIEAISSAGLIDGVSKTLAPSVDGIRLMVHEGIVELLKAVVDEAIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Identification of a Highly Conserved Hypothetical Protein TON_0340 as a Probable Manganese-Dependent Phosphatase.
pubmed doi rcsb
source organism Thermococcus onnurineus (strain na1)
molecule tags Unknown function
molecule keywords Uncharacterized protein
total genus 96
structure length 269
sequence length 269
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2016-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14336 DUF4392 Domain of unknown function (DUF4392)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1640.20 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 5gl4A00
5GL4A 5GL3A 5GKXA 5GL2A 4DWZA 4FC5A
chains in the Genus database with same CATH superfamily
2QB6A 1K20A 2QB8A 5GL3A 3DEVA 1WPMA 2HAWA 4FC5A 2ZXRA 1IR6A 1I74A 4RPAA 2ZXPA 2IW4A 1WPNA 3W5WA 4PY9A 1K23A 1WPPA 2ZXOA 2QB7A 5GL4A 2ENXA 5GKXA 5GL2A 4DWZA 4LS9A 2EB0A
chains in the Genus database with same CATH topology
2QB6A 1K20A 2QB8A 5GL3A 3DEVA 1WPMA 2HAWA 4FC5A 2ZXRA 1IR6A 1I74A 4RPAA 2ZXPA 2IW4A 1WPNA 3W5WA 4PY9A 1K23A 1WPPA 2ZXOA 2QB7A 5GL4A 2ENXA 5GKXA 5GL2A 4DWZA 4LS9A 2EB0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GL4 A;  5GL3 A;  5GKX A;  5GL2 A;  4DWZ A;  4FC5 A; 
#chains in the Genus database with same CATH topology
 2QB6 A;  1K20 A;  2QB8 A;  5GL3 A;  3DEV A;  1WPM A;  2HAW A;  4FC5 A;  2ZXR A;  1IR6 A;  1I74 A;  4RPA A;  2ZXP A;  2IW4 A;  1WPN A;  3W5W A;  4PY9 A;  1K23 A;  1WPP A;  2ZXO A;  2QB7 A;  5GL4 A;  2ENX A;  5GKX A;  5GL2 A;  4DWZ A;  4LS9 A;  2EB0 A; 
#chains in the Genus database with same CATH homology
 2QB6 A;  1K20 A;  2QB8 A;  5GL3 A;  3DEV A;  1WPM A;  2HAW A;  4FC5 A;  2ZXR A;  1IR6 A;  1I74 A;  4RPA A;  2ZXP A;  2IW4 A;  1WPN A;  3W5W A;  4PY9 A;  1K23 A;  1WPP A;  2ZXO A;  2QB7 A;  5GL4 A;  2ENX A;  5GKX A;  5GL2 A;  4DWZ A;  4LS9 A;  2EB0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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