5GLNA

Crystal structure of coxyl43, gh43 beta-xylosidase/alpha-arabinofuranosidase from a compostmicrobial metagenome in complex with xylotriose, calcium-bound form
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
330
structure length
330
Chain Sequence
VPRGSHMEPLVTHIYTADPSAHVFDGKVYIYPSHDIDAGTPENDMGDHFDMRDYHVLSMNSIPGEVTDHGVALDIKDIPWAGRQLWAPDAASKDGKYYLYFPAKDKEDIFRIGVAVSDSPAGPFKPESEPIKGSYSIDPAVFKDDDGKYYMYFGGIWGGQLQRWTTGEYAGHDASKTDLEQDDAPAIGPRIALMSDDMLSFAEPVKEISIVDEQGNPILGGDHDRRFFEAAWMHKYNGTYYLSYSTGDTHYIVYATGDNPYGPFTYRGVILNPVIGWTNHHSIVEFNGKWYLFYHDSSLSGGKTHLRCIKVTELTHNADGTIETISPYIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Glycoside hydrolase family 43
publication title Crystal structure of metagenomic beta-xylosidase/ alpha-l-arabinofuranosidase activated by calcium.
pubmed doi rcsb
source organism Uncultured bacterium
total genus 82
structure length 330
sequence length 330
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-07-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 5glnA00
3ZXKA 3VT0A 4NOVA 5A8DA 2EXIA 3WMYA 5FMDA 5JOYA 3C7OA 3OM7A 1GYEB 1Y9MA 3VSRA 1UV4A 3UGHA 3TAWA 2QQUA 1OYGA 4AK6A 3R67A 3U14A 3U75A 5FKBA 5FLWA 5FK8A 1GYHA 1Y9GA 4FFGA 1YI7A 1WL7A 3LIHA 3VT1A 1Y4WA 5GLRA 5A7VA 4N4BA 3OM6A 3SC7X 1Y7BA 5GLPA 3LIGA 3WAUA 3LFIA 4N2ZA 3D60A 3WPYA 3AKIA 2XQRA 3ZXLA 2X8TA 3QEDA 4O8OA 3VSFA 4O8PA 5B6TA 1ST8A 3WN1A 3AKGA 5AYEA 5GLLA 4AK5A 5A8CA 3CU9A 3D5YA 5FK7A 2EXHA 2QQWA 2ADEA 5JOXA 3AKHA 4UDKA 2B4WA 4KCAA 2YFRA 4FFHA 4AK7A 3LDKA 5AYCA 1PT2A 1VKDA 4KCBA 3KSTA 3PIGA 2VDTA 4EQVA 2OXBA 3UGGA 3PIJA 4UDIA 3WMZA 3BYLA 3OM2A 4N2RA 3QC2A 5GLQA 3K1UA 5GLMA 4ONZA 2AEYA 5JOZA 2EXKA 3QZ4A 5GLKA 4FFIA 4D47A 5ANNA 2X8FA 3WPZA 4KMIA 5GLNA 3C2UA 3WATA 5B6SA 1GYDB 2AC1A 3WPUA 3WPVA 2AEZA 2ADDA 3LF7A 3R4YA 5FMBA 1W2TA 4O8NA 3UGFA 4MLGA 3WN2A 5AYDA 3C7FA 4KC7A 4U6DA 2YFTA 4FFFA 4PVAA 4COTA 2EXJA 3C7EA 2YFSA 3VSSA 1UYPA 2QQVA 3RWKX 1YRZA 3NQHA 4PVIA 3VT2A 3WN0A 3KF3A 5A7VB 3KF5A 3OM5A 3BYJA 4UDGA 2X8SA 3ZXJA 3R4ZA 3P2NA 5FKCA 3C7GA 4N1IA 3LDRA 5GLOA 4QQSA 5AY9A 3VSZA 3WASA 3C7HA 1YIFA 3D61A 5FIXA 3BYNA 4U6BA 3AKFA 3LEMA 3QEEA 3BYKA 5FMCA 4UDJA 1W18A 4KC8A 3LV4A 3OM4A 3D5ZA 5C0PA 5JOWA 4UDKE 3QEFA
chains in the Genus database with same CATH superfamily
3ZXKA 3VT0A 4NOVA 5A8DA 2EXIA 3WMYA 5FMDA 5JOYA 3C7OA 3OM7A 1GYEB 1Y9MA 3VSRA 1UV4A 3UGHA 3TAWA 2QQUA 1OYGA 4AK6A 3R67A 3U14A 3U75A 5FKBA 5FLWA 5FK8A 1GYHA 1Y9GA 4FFGA 1YI7A 1WL7A 3LIHA 3VT1A 1Y4WA 5GLRA 5A7VA 4N4BA 3OM6A 3SC7X 1Y7BA 5GLPA 3LIGA 3WAUA 3LFIA 4N2ZA 3D60A 3WPYA 3AKIA 2XQRA 3ZXLA 2X8TA 3QEDA 4O8OA 3VSFA 4O8PA 5B6TA 1ST8A 3WN1A 3AKGA 5AYEA 5GLLA 4AK5A 5A8CA 3CU9A 3D5YA 5FK7A 2EXHA 2QQWA 2ADEA 5JOXA 3AKHA 4UDKA 2B4WA 4KCAA 2YFRA 4FFHA 4AK7A 3LDKA 5AYCA 1PT2A 1VKDA 4KCBA 3KSTA 3PIGA 2VDTA 4EQVA 2OXBA 3UGGA 3PIJA 4UDIA 3WMZA 3BYLA 3OM2A 4N2RA 3QC2A 5GLQA 3K1UA 5GLMA 4ONZA 2AEYA 5JOZA 2EXKA 3QZ4A 5GLKA 4FFIA 4D47A 5ANNA 1TL2A 2X8FA 3WPZA 4KMIA 5GLNA 3C2UA 3WATA 5B6SA 1GYDB 2AC1A 3WPUA 3WPVA 2AEZA 2ADDA 3LF7A 3R4YA 5FMBA 1W2TA 4O8NA 3UGFA 4MLGA 3WN2A 5AYDA 3C7FA 4KC7A 4U6DA 2YFTA 4FFFA 4PVAA 4COTA 2EXJA 3C7EA 2YFSA 3VSSA 1UYPA 2QQVA 3RWKX 1YRZA 3NQHA 4PVIA 3VT2A 3WN0A 3KF3A 5A7VB 3KF5A 3OM5A 3BYJA 4UDGA 2X8SA 3ZXJA 3R4ZA 3P2NA 5FKCA 3C7GA 4N1IA 3LDRA 5C2MA 5GLOA 4QQSA 5AY9A 3VSZA 3WASA 3C7HA 1YIFA 3D61A 5FIXA 3BYNA 4U6BA 3AKFA 3LEMA 3QEEA 3BYKA 5FMCA 4UDJA 1W18A 4KC8A 3LV4A 3OM4A 3D5ZA 5C0PA 5JOWA 4UDKE 3QEFA
chains in the Genus database with same CATH topology
3ZXKA 3VT0A 4NOVA 5A8DA 2EXIA 3WMYA 5FMDA 5JOYA 3C7OA 3OM7A 1GYEB 1Y9MA 3VSRA 1UV4A 3UGHA 3TAWA 2QQUA 1OYGA 4AK6A 3R67A 3U14A 3U75A 5FKBA 5FLWA 5FK8A 1GYHA 1Y9GA 4FFGA 1YI7A 1WL7A 3LIHA 3VT1A 1Y4WA 5GLRA 5A7VA 4N4BA 3OM6A 3SC7X 1Y7BA 5GLPA 3LIGA 3WAUA 3LFIA 4N2ZA 3D60A 3WPYA 3AKIA 2XQRA 3ZXLA 2X8TA 3QEDA 4O8OA 3VSFA 4O8PA 5B6TA 1ST8A 3WN1A 3AKGA 5AYEA 5GLLA 4AK5A 5A8CA 3CU9A 3D5YA 5FK7A 2EXHA 2QQWA 2ADEA 5JOXA 3AKHA 4UDKA 2B4WA 4KCAA 2YFRA 4FFHA 4AK7A 3LDKA 5AYCA 1PT2A 1VKDA 4KCBA 3KSTA 3PIGA 2VDTA 4EQVA 2OXBA 3UGGA 3PIJA 4UDIA 3WMZA 3BYLA 3OM2A 4N2RA 3QC2A 5GLQA 3K1UA 5GLMA 4ONZA 2AEYA 5JOZA 2EXKA 3QZ4A 5GLKA 4FFIA 4D47A 5ANNA 2X8FA 3WPZA 4KMIA 5GLNA 3C2UA 3WATA 5B6SA 1GYDB 2AC1A 3WPUA 3WPVA 2AEZA 2ADDA 3LF7A 3R4YA 5FMBA 1W2TA 4O8NA 3UGFA 4MLGA 3WN2A 5AYDA 3C7FA 4KC7A 4U6DA 2YFTA 4FFFA 4PVAA 4COTA 2EXJA 3C7EA 2YFSA 3VSSA 1UYPA 2QQVA 3RWKX 1YRZA 3NQHA 4PVIA 3VT2A 3WN0A 3KF3A 5A7VB 3KF5A 3OM5A 3BYJA 4UDGA 2X8SA 3ZXJA 3R4ZA 3P2NA 5FKCA 3C7GA 4N1IA 3LDRA 5GLOA 4QQSA 5AY9A 3VSZA 3WASA 3C7HA 1YIFA 3D61A 5FIXA 3BYNA 4U6BA 3AKFA 3LEMA 3QEEA 3BYKA 5FMCA 4UDJA 1W18A 4KC8A 3LV4A 3OM4A 3D5ZA 5C0PA 5JOWA 4UDKE 3QEFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZXK A;  3VT0 A;  4NOV A;  5A8D A;  2EXI A;  3WMY A;  5FMD A;  5JOY A;  3C7O A;  3OM7 A;  1GYE B;  1Y9M A;  3VSR A;  1UV4 A;  3UGH A;  3TAW A;  2QQU A;  1OYG A;  4AK6 A;  3R67 A;  3U14 A;  3U75 A;  5FKB A;  5FLW A;  5FK8 A;  1GYH A;  1Y9G A;  4FFG A;  1YI7 A;  1WL7 A;  3LIH A;  3VT1 A;  1Y4W A;  5GLR A;  5A7V A;  4N4B A;  3OM6 A;  3SC7 X;  1Y7B A;  5GLP A;  3LIG A;  3WAU A;  3LFI A;  4N2Z A;  3D60 A;  3WPY A;  3AKI A;  2XQR A;  3ZXL A;  2X8T A;  3QED A;  4O8O A;  3VSF A;  4O8P A;  5B6T A;  1ST8 A;  3WN1 A;  3AKG A;  5AYE A;  5GLL A;  4AK5 A;  5A8C A;  3CU9 A;  3D5Y A;  5FK7 A;  2EXH A;  2QQW A;  2ADE A;  5JOX A;  3AKH A;  4UDK A;  2B4W A;  4KCA A;  2YFR A;  4FFH A;  4AK7 A;  3LDK A;  5AYC A;  1PT2 A;  1VKD A;  4KCB A;  3KST A;  3PIG A;  2VDT A;  4EQV A;  2OXB A;  3UGG A;  3PIJ A;  4UDI A;  3WMZ A;  3BYL A;  3OM2 A;  4N2R A;  3QC2 A;  5GLQ A;  3K1U A;  5GLM A;  4ONZ A;  2AEY A;  5JOZ A;  2EXK A;  3QZ4 A;  5GLK A;  4FFI A;  4D47 A;  5ANN A;  2X8F A;  3WPZ A;  4KMI A;  5GLN A;  3C2U A;  3WAT A;  5B6S A;  1GYD B;  2AC1 A;  3WPU A;  3WPV A;  2AEZ A;  2ADD A;  3LF7 A;  3R4Y A;  5FMB A;  1W2T A;  4O8N A;  3UGF A;  4MLG A;  3WN2 A;  5AYD A;  3C7F A;  4KC7 A;  4U6D A;  2YFT A;  4FFF A;  4PVA A;  4COT A;  2EXJ A;  3C7E A;  2YFS A;  3VSS A;  1UYP A;  2QQV A;  3RWK X;  1YRZ A;  3NQH A;  4PVI A;  3VT2 A;  3WN0 A;  3KF3 A;  5A7V B;  3KF5 A;  3OM5 A;  3BYJ A;  4UDG A;  2X8S A;  3ZXJ A;  3R4Z A;  3P2N A;  5FKC A;  3C7G A;  4N1I A;  3LDR A;  5GLO A;  4QQS A;  5AY9 A;  3VSZ A;  3WAS A;  3C7H A;  1YIF A;  3D61 A;  5FIX A;  3BYN A;  4U6B A;  3AKF A;  3LEM A;  3QEE A;  3BYK A;  5FMC A;  4UDJ A;  1W18 A;  4KC8 A;  3LV4 A;  3OM4 A;  3D5Z A;  5C0P A;  5JOW A;  4UDK E;  3QEF A; 
#chains in the Genus database with same CATH topology
 3ZXK A;  3VT0 A;  4NOV A;  5A8D A;  2EXI A;  3WMY A;  5FMD A;  5JOY A;  3C7O A;  3OM7 A;  1GYE B;  1Y9M A;  3VSR A;  1UV4 A;  3UGH A;  3TAW A;  2QQU A;  1OYG A;  4AK6 A;  3R67 A;  3U14 A;  3U75 A;  5FKB A;  5FLW A;  5FK8 A;  1GYH A;  1Y9G A;  4FFG A;  1YI7 A;  1WL7 A;  3LIH A;  3VT1 A;  1Y4W A;  5GLR A;  5A7V A;  4N4B A;  3OM6 A;  3SC7 X;  1Y7B A;  5GLP A;  3LIG A;  3WAU A;  3LFI A;  4N2Z A;  3D60 A;  3WPY A;  3AKI A;  2XQR A;  3ZXL A;  2X8T A;  3QED A;  4O8O A;  3VSF A;  4O8P A;  5B6T A;  1ST8 A;  3WN1 A;  3AKG A;  5AYE A;  5GLL A;  4AK5 A;  5A8C A;  3CU9 A;  3D5Y A;  5FK7 A;  2EXH A;  2QQW A;  2ADE A;  5JOX A;  3AKH A;  4UDK A;  2B4W A;  4KCA A;  2YFR A;  4FFH A;  4AK7 A;  3LDK A;  5AYC A;  1PT2 A;  1VKD A;  4KCB A;  3KST A;  3PIG A;  2VDT A;  4EQV A;  2OXB A;  3UGG A;  3PIJ A;  4UDI A;  3WMZ A;  3BYL A;  3OM2 A;  4N2R A;  3QC2 A;  5GLQ A;  3K1U A;  5GLM A;  4ONZ A;  2AEY A;  5JOZ A;  2EXK A;  3QZ4 A;  5GLK A;  4FFI A;  4D47 A;  5ANN A;  1TL2 A;  2X8F A;  3WPZ A;  4KMI A;  5GLN A;  3C2U A;  3WAT A;  5B6S A;  1GYD B;  2AC1 A;  3WPU A;  3WPV A;  2AEZ A;  2ADD A;  3LF7 A;  3R4Y A;  5FMB A;  1W2T A;  4O8N A;  3UGF A;  4MLG A;  3WN2 A;  5AYD A;  3C7F A;  4KC7 A;  4U6D A;  2YFT A;  4FFF A;  4PVA A;  4COT A;  2EXJ A;  3C7E A;  2YFS A;  3VSS A;  1UYP A;  2QQV A;  3RWK X;  1YRZ A;  3NQH A;  4PVI A;  3VT2 A;  3WN0 A;  3KF3 A;  5A7V B;  3KF5 A;  3OM5 A;  3BYJ A;  4UDG A;  2X8S A;  3ZXJ A;  3R4Z A;  3P2N A;  5FKC A;  3C7G A;  4N1I A;  3LDR A;  5C2M A;  5GLO A;  4QQS A;  5AY9 A;  3VSZ A;  3WAS A;  3C7H A;  1YIF A;  3D61 A;  5FIX A;  3BYN A;  4U6B A;  3AKF A;  3LEM A;  3QEE A;  3BYK A;  5FMC A;  4UDJ A;  1W18 A;  4KC8 A;  3LV4 A;  3OM4 A;  3D5Z A;  5C0P A;  5JOW A;  4UDK E;  3QEF A; 
#chains in the Genus database with same CATH homology
 3ZXK A;  3VT0 A;  4NOV A;  5A8D A;  2EXI A;  3WMY A;  5FMD A;  5JOY A;  3C7O A;  3OM7 A;  1GYE B;  1Y9M A;  3VSR A;  1UV4 A;  3UGH A;  3TAW A;  2QQU A;  1OYG A;  4AK6 A;  3R67 A;  3U14 A;  3U75 A;  5FKB A;  5FLW A;  5FK8 A;  1GYH A;  1Y9G A;  4FFG A;  1YI7 A;  1WL7 A;  3LIH A;  3VT1 A;  1Y4W A;  5GLR A;  5A7V A;  4N4B A;  3OM6 A;  3SC7 X;  1Y7B A;  5GLP A;  3LIG A;  3WAU A;  3LFI A;  4N2Z A;  3D60 A;  3WPY A;  3AKI A;  2XQR A;  3ZXL A;  2X8T A;  3QED A;  4O8O A;  3VSF A;  4O8P A;  5B6T A;  1ST8 A;  3WN1 A;  3AKG A;  5AYE A;  5GLL A;  4AK5 A;  5A8C A;  3CU9 A;  3D5Y A;  5FK7 A;  2EXH A;  2QQW A;  2ADE A;  5JOX A;  3AKH A;  4UDK A;  2B4W A;  4KCA A;  2YFR A;  4FFH A;  4AK7 A;  3LDK A;  5AYC A;  1PT2 A;  1VKD A;  4KCB A;  3KST A;  3PIG A;  2VDT A;  4EQV A;  2OXB A;  3UGG A;  3PIJ A;  4UDI A;  3WMZ A;  3BYL A;  3OM2 A;  4N2R A;  3QC2 A;  5GLQ A;  3K1U A;  5GLM A;  4ONZ A;  2AEY A;  5JOZ A;  2EXK A;  3QZ4 A;  5GLK A;  4FFI A;  4D47 A;  5ANN A;  2X8F A;  3WPZ A;  4KMI A;  5GLN A;  3C2U A;  3WAT A;  5B6S A;  1GYD B;  2AC1 A;  3WPU A;  3WPV A;  2AEZ A;  2ADD A;  3LF7 A;  3R4Y A;  5FMB A;  1W2T A;  4O8N A;  3UGF A;  4MLG A;  3WN2 A;  5AYD A;  3C7F A;  4KC7 A;  4U6D A;  2YFT A;  4FFF A;  4PVA A;  4COT A;  2EXJ A;  3C7E A;  2YFS A;  3VSS A;  1UYP A;  2QQV A;  3RWK X;  1YRZ A;  3NQH A;  4PVI A;  3VT2 A;  3WN0 A;  3KF3 A;  5A7V B;  3KF5 A;  3OM5 A;  3BYJ A;  4UDG A;  2X8S A;  3ZXJ A;  3R4Z A;  3P2N A;  5FKC A;  3C7G A;  4N1I A;  3LDR A;  5GLO A;  4QQS A;  5AY9 A;  3VSZ A;  3WAS A;  3C7H A;  1YIF A;  3D61 A;  5FIX A;  3BYN A;  4U6B A;  3AKF A;  3LEM A;  3QEE A;  3BYK A;  5FMC A;  4UDJ A;  1W18 A;  4KC8 A;  3LV4 A;  3OM4 A;  3D5Z A;  5C0P A;  5JOW A;  4UDK E;  3QEF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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