5GRRA

Crystal structure of mcr-1
Total Genus 128
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
Knots found
sequence length
323
structure length
323
Chain Sequence
TIYHAKDAVQATKPDMRKPRLVVFVVGETARADHVSFNGYERDTFPQLAKIDGVTNFSNVTSCGTSTAYSVPCMFSYLGADEYDVDTAKYQENVLDTLDRLGVSILWRDNNSDSKGVMDKLPKAQFADYKSATNNAICNTNPYNECRDVGMLVGLDDFVAANNGKDMLIMLHQMGNHGPAYFKRYDEKFAKFTPVCEGNELAKCEHQSLINAYDNALLATDDFIAQSIQWLQTHSNAYDVSMLYVSDHGESLGENGVYLHGMPNAFAPKEQRSVPAFFWTDKQTGITPMATDTVLTHDAITPTLLKLFDVTADKVKDRTAFIR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Probable phosphatidylethanolamine transferase Mcr-1
publication title High resolution crystal structure of the catalytic domain of MCR-1
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase
total genus 128
structure length 323
sequence length 323
other databases KnotProt 2.0: S +31
ec nomenclature ec 2.7.-.-:
pdb deposition date 2016-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 5grrA00
4NWJA 1FSUA 3DPCA 4GTWA 5C66A 4MY4A 4CXUA 4KJGA 1P49A 4UORA 3BDFA 5DLVA 4LRAA 2W5XA 1EW2A 4LRCA 4UPLA 4MHXA 3SZYA 2VQRA 2GSOA 1ELXA 3MK2A 3T01A 1EW8A 4GTXA 4LR2A 1ALIA 2W5VA 4N7TA 4UPHA 5INHA 3E2DA 5IJQA 2XRGA 4KM4A 1K7HA 4LR9A 4ZGAA 5K4PA 1ALJA 2ANHA 3B5QA 3IGYB 4KAVA 1E33P 3UNYA 3IGZB 1AJCA 3T02A 1ANIA 2D1GA 2W5WA 3DYCA 2X98A 1EW9A 1KH5A 4UPIA 3WAXA 1AJBA 4CYRA 2W8SA 1URAA 1ELZA 4CXSA 4LRDA 2W5TA 5EGHA 5AJ9A 1ALHA 4NWXA 4ZG7A 1HJKA 3NKQA 5EGEA 1AJAA 3NKRA 2IFYA 4LR8A 3IDDA 4TN0A 5L0EA 5DLWA 3BDHA 2GSNA 3UN2A 3TX0A 1URBA 1ED9A 2W5SA 2GLQA 1HQAA 2IUCA 4KJDA 1SHQA 3CMRA 1ED8A 5IJSA 2IUCB 3NKPA 4LRBA 4LR7A 1KH4A 3M8YA 5DLTA 3WAWA 2XR9A 1E1ZP 3NKMA 4FDJA 5GOVA 4ZG6A 4ZG9A 1KHLA 3M7VA 1Y6VA 4GTZA 3M8WA 5LQQA 4LQYA 1AJDA 1ANJA 1AUKA 5LIAA 3SZZA 2W5QA 1ALKA 3BDGB 1EI6A 1EQJA 5LRMA 4QAXA 5HRTA 2GSUA 4LREA 1ELYA 1KH9A 3KD8A 3LXQA 5KXAA 5L0KA 4LRFA 4UPKA 1E3CP 3NVLA 5TJ3A 4FDIA 3MK0A 3OT9A 1HDHA 2G9YA 3M8ZA 1Y7AA 3A52A 4MIVA 2RH6A 2W5RA 1EJJA 1ZEFA 4CYSA 5LRNA 4B56A 1KHNA 3WAYA 3UO0A 1SHNA 3WBHA 1B8JA 1O99A 3BDGA 1KH7A 2QZUA 1N2LA 1ZEBA 5GRRA 3TWZA 2GA3A 4CXKA 1N2KA 3Q3QA 3UN3A 3ED4A 1ZEDA 3UN5A 1O98A 3T00A 4GTYA 2ZKTA 4UOPA 5L0BA 4KAYA 1KHJA 3NKNA 1KHKA 3NKOA 3MK1A 3WAVA 2W8DA 4YR1A 3TG0A 1E2SP 4UOOA
chains in the Genus database with same CATH superfamily
4NWJA 1FSUA 3DPCA 4GTWA 5C66A 4MY4A 4CXUA 4KJGA 1P49A 4UORA 3BDFA 5DLVA 4LRAA 2W5XA 1EW2A 4LRCA 4UPLA 4MHXA 3SZYA 2VQRA 2GSOA 1ELXA 3MK2A 3T01A 1EW8A 4GTXA 4LR2A 1ALIA 2W5VA 4N7TA 4UPHA 5INHA 3E2DA 5IJQA 2XRGA 4KM4A 1K7HA 4LR9A 4ZGAA 5K4PA 1ALJA 2ANHA 3B5QA 3IGYB 4KAVA 1E33P 3UNYA 3IGZB 1AJCA 3T02A 1ANIA 2D1GA 2W5WA 3DYCA 2X98A 1EW9A 1KH5A 4UPIA 3WAXA 1AJBA 4CYRA 2W8SA 1URAA 1ELZA 4CXSA 4LRDA 2W5TA 5EGHA 5AJ9A 1ALHA 4NWXA 4ZG7A 1HJKA 3NKQA 5EGEA 1AJAA 3NKRA 2IFYA 4LR8A 3IDDA 4TN0A 5L0EA 5DLWA 3BDHA 2GSNA 3UN2A 3TX0A 1URBA 1ED9A 2W5SA 2GLQA 1HQAA 2IUCA 4KJDA 1SHQA 3CMRA 1ED8A 5IJSA 2IUCB 3NKPA 4LRBA 4LR7A 1KH4A 3M8YA 5DLTA 3WAWA 2XR9A 1E1ZP 3NKMA 4FDJA 5GOVA 4ZG6A 4ZG9A 1KHLA 3M7VA 1Y6VA 4GTZA 3M8WA 5LQQA 4LQYA 1AJDA 1ANJA 1AUKA 5LIAA 3SZZA 2W5QA 1ALKA 3BDGB 1EI6A 1EQJA 5LRMA 4QAXA 5HRTA 2GSUA 4LREA 1ELYA 1KH9A 3KD8A 3LXQA 5KXAA 5L0KA 4LRFA 4UPKA 1E3CP 3NVLA 5TJ3A 4FDIA 3MK0A 3OT9A 1HDHA 2G9YA 3M8ZA 1Y7AA 3A52A 4MIVA 2RH6A 2W5RA 1EJJA 1ZEFA 4CYSA 5LRNA 4B56A 1KHNA 3WAYA 3UO0A 1SHNA 3WBHA 1B8JA 1O99A 3BDGA 1KH7A 2QZUA 1N2LA 1ZEBA 5GRRA 3TWZA 2GA3A 4CXKA 1N2KA 3Q3QA 3UN3A 3ED4A 1ZEDA 3UN5A 1O98A 3T00A 4GTYA 2ZKTA 4UOPA 5L0BA 4KAYA 1KHJA 3NKNA 1KHKA 3NKOA 3MK1A 3WAVA 2W8DA 4YR1A 3TG0A 1E2SP 4UOOA
chains in the Genus database with same CATH topology
4NWJA 1FSUA 3DPCA 4GTWA 5C66A 4MY4A 4CXUA 4KJGA 1P49A 4UORA 3BDFA 5DLVA 4LRAA 2W5XA 1EW2A 4LRCA 4UPLA 4MHXA 3SZYA 2VQRA 2GSOA 1ELXA 3MK2A 3T01A 1EW8A 4GTXA 4LR2A 1ALIA 2W5VA 4N7TA 4UPHA 5INHA 3E2DA 5IJQA 2XRGA 4KM4A 1K7HA 4LR9A 4ZGAA 5K4PA 1ALJA 2ANHA 3B5QA 3IGYB 4KAVA 1E33P 3UNYA 3IGZB 1AJCA 3T02A 1ANIA 2D1GA 2W5WA 3DYCA 2X98A 1EW9A 1KH5A 4UPIA 3WAXA 1AJBA 4CYRA 2W8SA 1URAA 1ELZA 4CXSA 4LRDA 2W5TA 5EGHA 5AJ9A 1ALHA 4NWXA 4ZG7A 1HJKA 3NKQA 5EGEA 1AJAA 3NKRA 2IFYA 4LR8A 3IDDA 4TN0A 5L0EA 5DLWA 3BDHA 2GSNA 3UN2A 3TX0A 1URBA 1ED9A 2W5SA 2GLQA 1HQAA 2IUCA 4KJDA 1SHQA 3CMRA 1ED8A 5IJSA 2IUCB 3NKPA 4LRBA 4LR7A 1KH4A 3M8YA 5DLTA 3WAWA 2XR9A 1E1ZP 3NKMA 4FDJA 5GOVA 4ZG6A 4ZG9A 1KHLA 3M7VA 1Y6VA 4GTZA 3M8WA 5LQQA 4LQYA 1AJDA 1ANJA 1AUKA 5LIAA 3SZZA 2W5QA 1ALKA 3BDGB 1EI6A 1EQJA 5LRMA 4QAXA 5HRTA 2GSUA 4LREA 1ELYA 1KH9A 3KD8A 3LXQA 5KXAA 5L0KA 4LRFA 4UPKA 1E3CP 3NVLA 5TJ3A 4FDIA 3MK0A 3OT9A 1HDHA 2G9YA 3M8ZA 1Y7AA 3A52A 4MIVA 2RH6A 2W5RA 1EJJA 1ZEFA 4CYSA 5LRNA 4B56A 1KHNA 3WAYA 3UO0A 1SHNA 3WBHA 1B8JA 1O99A 3BDGA 1KH7A 2QZUA 1N2LA 1ZEBA 5GRRA 3TWZA 2GA3A 4CXKA 1N2KA 3Q3QA 3UN3A 3ED4A 1ZEDA 3UN5A 1O98A 3T00A 4GTYA 2ZKTA 4UOPA 5L0BA 4KAYA 1KHJA 3NKNA 1KHKA 3NKOA 3MK1A 3WAVA 2W8DA 4YR1A 3TG0A 1E2SP 4UOOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NWJ A;  1FSU A;  3DPC A;  4GTW A;  5C66 A;  4MY4 A;  4CXU A;  4KJG A;  1P49 A;  4UOR A;  3BDF A;  5DLV A;  4LRA A;  2W5X A;  1EW2 A;  4LRC A;  4UPL A;  4MHX A;  3SZY A;  2VQR A;  2GSO A;  1ELX A;  3MK2 A;  3T01 A;  1EW8 A;  4GTX A;  4LR2 A;  1ALI A;  2W5V A;  4N7T A;  4UPH A;  5INH A;  3E2D A;  5IJQ A;  2XRG A;  4KM4 A;  1K7H A;  4LR9 A;  4ZGA A;  5K4P A;  1ALJ A;  2ANH A;  3B5Q A;  3IGY B;  4KAV A;  1E33 P;  3UNY A;  3IGZ B;  1AJC A;  3T02 A;  1ANI A;  2D1G A;  2W5W A;  3DYC A;  2X98 A;  1EW9 A;  1KH5 A;  4UPI A;  3WAX A;  1AJB A;  4CYR A;  2W8S A;  1URA A;  1ELZ A;  4CXS A;  4LRD A;  2W5T A;  5EGH A;  5AJ9 A;  1ALH A;  4NWX A;  4ZG7 A;  1HJK A;  3NKQ A;  5EGE A;  1AJA A;  3NKR A;  2IFY A;  4LR8 A;  3IDD A;  4TN0 A;  5L0E A;  5DLW A;  3BDH A;  2GSN A;  3UN2 A;  3TX0 A;  1URB A;  1ED9 A;  2W5S A;  2GLQ A;  1HQA A;  2IUC A;  4KJD A;  1SHQ A;  3CMR A;  1ED8 A;  5IJS A;  2IUC B;  3NKP A;  4LRB A;  4LR7 A;  1KH4 A;  3M8Y A;  5DLT A;  3WAW A;  2XR9 A;  1E1Z P;  3NKM A;  4FDJ A;  5GOV A;  4ZG6 A;  4ZG9 A;  1KHL A;  3M7V A;  1Y6V A;  4GTZ A;  3M8W A;  5LQQ A;  4LQY A;  1AJD A;  1ANJ A;  1AUK A;  5LIA A;  3SZZ A;  2W5Q A;  1ALK A;  3BDG B;  1EI6 A;  1EQJ A;  5LRM A;  4QAX A;  5HRT A;  2GSU A;  4LRE A;  1ELY A;  1KH9 A;  3KD8 A;  3LXQ A;  5KXA A;  5L0K A;  4LRF A;  4UPK A;  1E3C P;  3NVL A;  5TJ3 A;  4FDI A;  3MK0 A;  3OT9 A;  1HDH A;  2G9Y A;  3M8Z A;  1Y7A A;  3A52 A;  4MIV A;  2RH6 A;  2W5R A;  1EJJ A;  1ZEF A;  4CYS A;  5LRN A;  4B56 A;  1KHN A;  3WAY A;  3UO0 A;  1SHN A;  3WBH A;  1B8J A;  1O99 A;  3BDG A;  1KH7 A;  2QZU A;  1N2L A;  1ZEB A;  5GRR A;  3TWZ A;  2GA3 A;  4CXK A;  1N2K A;  3Q3Q A;  3UN3 A;  3ED4 A;  1ZED A;  3UN5 A;  1O98 A;  3T00 A;  4GTY A;  2ZKT A;  4UOP A;  5L0B A;  4KAY A;  1KHJ A;  3NKN A;  1KHK A;  3NKO A;  3MK1 A;  3WAV A;  2W8D A;  4YR1 A;  3TG0 A;  1E2S P;  4UOO A; 
#chains in the Genus database with same CATH topology
 4NWJ A;  1FSU A;  3DPC A;  4GTW A;  5C66 A;  4MY4 A;  4CXU A;  4KJG A;  1P49 A;  4UOR A;  3BDF A;  5DLV A;  4LRA A;  2W5X A;  1EW2 A;  4LRC A;  4UPL A;  4MHX A;  3SZY A;  2VQR A;  2GSO A;  1ELX A;  3MK2 A;  3T01 A;  1EW8 A;  4GTX A;  4LR2 A;  1ALI A;  2W5V A;  4N7T A;  4UPH A;  5INH A;  3E2D A;  5IJQ A;  2XRG A;  4KM4 A;  1K7H A;  4LR9 A;  4ZGA A;  5K4P A;  1ALJ A;  2ANH A;  3B5Q A;  3IGY B;  4KAV A;  1E33 P;  3UNY A;  3IGZ B;  1AJC A;  3T02 A;  1ANI A;  2D1G A;  2W5W A;  3DYC A;  2X98 A;  1EW9 A;  1KH5 A;  4UPI A;  3WAX A;  1AJB A;  4CYR A;  2W8S A;  1URA A;  1ELZ A;  4CXS A;  4LRD A;  2W5T A;  5EGH A;  5AJ9 A;  1ALH A;  4NWX A;  4ZG7 A;  1HJK A;  3NKQ A;  5EGE A;  1AJA A;  3NKR A;  2IFY A;  4LR8 A;  3IDD A;  4TN0 A;  5L0E A;  5DLW A;  3BDH A;  2GSN A;  3UN2 A;  3TX0 A;  1URB A;  1ED9 A;  2W5S A;  2GLQ A;  1HQA A;  2IUC A;  4KJD A;  1SHQ A;  3CMR A;  1ED8 A;  5IJS A;  2IUC B;  3NKP A;  4LRB A;  4LR7 A;  1KH4 A;  3M8Y A;  5DLT A;  3WAW A;  2XR9 A;  1E1Z P;  3NKM A;  4FDJ A;  5GOV A;  4ZG6 A;  4ZG9 A;  1KHL A;  3M7V A;  1Y6V A;  4GTZ A;  3M8W A;  5LQQ A;  4LQY A;  1AJD A;  1ANJ A;  1AUK A;  5LIA A;  3SZZ A;  2W5Q A;  1ALK A;  3BDG B;  1EI6 A;  1EQJ A;  5LRM A;  4QAX A;  5HRT A;  2GSU A;  4LRE A;  1ELY A;  1KH9 A;  3KD8 A;  3LXQ A;  5KXA A;  5L0K A;  4LRF A;  4UPK A;  1E3C P;  3NVL A;  5TJ3 A;  4FDI A;  3MK0 A;  3OT9 A;  1HDH A;  2G9Y A;  3M8Z A;  1Y7A A;  3A52 A;  4MIV A;  2RH6 A;  2W5R A;  1EJJ A;  1ZEF A;  4CYS A;  5LRN A;  4B56 A;  1KHN A;  3WAY A;  3UO0 A;  1SHN A;  3WBH A;  1B8J A;  1O99 A;  3BDG A;  1KH7 A;  2QZU A;  1N2L A;  1ZEB A;  5GRR A;  3TWZ A;  2GA3 A;  4CXK A;  1N2K A;  3Q3Q A;  3UN3 A;  3ED4 A;  1ZED A;  3UN5 A;  1O98 A;  3T00 A;  4GTY A;  2ZKT A;  4UOP A;  5L0B A;  4KAY A;  1KHJ A;  3NKN A;  1KHK A;  3NKO A;  3MK1 A;  3WAV A;  2W8D A;  4YR1 A;  3TG0 A;  1E2S P;  4UOO A; 
#chains in the Genus database with same CATH homology
 4NWJ A;  1FSU A;  3DPC A;  4GTW A;  5C66 A;  4MY4 A;  4CXU A;  4KJG A;  1P49 A;  4UOR A;  3BDF A;  5DLV A;  4LRA A;  2W5X A;  1EW2 A;  4LRC A;  4UPL A;  4MHX A;  3SZY A;  2VQR A;  2GSO A;  1ELX A;  3MK2 A;  3T01 A;  1EW8 A;  4GTX A;  4LR2 A;  1ALI A;  2W5V A;  4N7T A;  4UPH A;  5INH A;  3E2D A;  5IJQ A;  2XRG A;  4KM4 A;  1K7H A;  4LR9 A;  4ZGA A;  5K4P A;  1ALJ A;  2ANH A;  3B5Q A;  3IGY B;  4KAV A;  1E33 P;  3UNY A;  3IGZ B;  1AJC A;  3T02 A;  1ANI A;  2D1G A;  2W5W A;  3DYC A;  2X98 A;  1EW9 A;  1KH5 A;  4UPI A;  3WAX A;  1AJB A;  4CYR A;  2W8S A;  1URA A;  1ELZ A;  4CXS A;  4LRD A;  2W5T A;  5EGH A;  5AJ9 A;  1ALH A;  4NWX A;  4ZG7 A;  1HJK A;  3NKQ A;  5EGE A;  1AJA A;  3NKR A;  2IFY A;  4LR8 A;  3IDD A;  4TN0 A;  5L0E A;  5DLW A;  3BDH A;  2GSN A;  3UN2 A;  3TX0 A;  1URB A;  1ED9 A;  2W5S A;  2GLQ A;  1HQA A;  2IUC A;  4KJD A;  1SHQ A;  3CMR A;  1ED8 A;  5IJS A;  2IUC B;  3NKP A;  4LRB A;  4LR7 A;  1KH4 A;  3M8Y A;  5DLT A;  3WAW A;  2XR9 A;  1E1Z P;  3NKM A;  4FDJ A;  5GOV A;  4ZG6 A;  4ZG9 A;  1KHL A;  3M7V A;  1Y6V A;  4GTZ A;  3M8W A;  5LQQ A;  4LQY A;  1AJD A;  1ANJ A;  1AUK A;  5LIA A;  3SZZ A;  2W5Q A;  1ALK A;  3BDG B;  1EI6 A;  1EQJ A;  5LRM A;  4QAX A;  5HRT A;  2GSU A;  4LRE A;  1ELY A;  1KH9 A;  3KD8 A;  3LXQ A;  5KXA A;  5L0K A;  4LRF A;  4UPK A;  1E3C P;  3NVL A;  5TJ3 A;  4FDI A;  3MK0 A;  3OT9 A;  1HDH A;  2G9Y A;  3M8Z A;  1Y7A A;  3A52 A;  4MIV A;  2RH6 A;  2W5R A;  1EJJ A;  1ZEF A;  4CYS A;  5LRN A;  4B56 A;  1KHN A;  3WAY A;  3UO0 A;  1SHN A;  3WBH A;  1B8J A;  1O99 A;  3BDG A;  1KH7 A;  2QZU A;  1N2L A;  1ZEB A;  5GRR A;  3TWZ A;  2GA3 A;  4CXK A;  1N2K A;  3Q3Q A;  3UN3 A;  3ED4 A;  1ZED A;  3UN5 A;  1O98 A;  3T00 A;  4GTY A;  2ZKT A;  4UOP A;  5L0B A;  4KAY A;  1KHJ A;  3NKN A;  1KHK A;  3NKO A;  3MK1 A;  3WAV A;  2W8D A;  4YR1 A;  3TG0 A;  1E2S P;  4UOO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...