5GUIA

Crystal structure of the n-terminal domain of caseinolytic protease associated chaperone clpc1 from arabidopsis thaliana
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
148
structure length
148
Chain Sequence
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGENLEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures reveal N-terminal Domain of Arabidopsis thaliana ClpD to be highly divergent from that of ClpC1
doi rcsb
molecule tags Chaperone
source organism Arabidopsis thaliana
molecule keywords Chaperone protein ClpC1, chloroplastic
total genus 62
structure length 148
sequence length 148
ec nomenclature
pdb deposition date 2016-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 5guiA00
1QVRA 3WDDA 3FH2A 4HH6A 4Y0CA 1MBUA 4IODA 3WDEA 1K6KA 1KHYA 1KSFX 3WDCA 5GUIA 2K77A 1MBXA 1R6BX 1R6QA 5HBNA 1MBVA 3ZRIA 3ZRJA 2Y1QA 4P15A 1R6CX 4HH5A 1MG9B 1LZWB 3PXGA 3WDBA 4UQWA 3FESA 1R6OA 4IRFA 4Y0BA 2Y1RA
chains in the Genus database with same CATH superfamily
1QVRA 3WDDA 3FH2A 4HH6A 4Y0CA 1MBUA 4IODA 3WDEA 1K6KA 1KHYA 1KSFX 3WDCA 5GUIA 2K77A 1MBXA 1R6BX 1R6QA 5HBNA 1MBVA 3ZRIA 3ZRJA 2Y1QA 4P15A 1R6CX 4HH5A 1MG9B 1LZWB 3PXGA 3WDBA 4UQWA 3FESA 1R6OA 4IRFA 4Y0BA 2Y1RA
chains in the Genus database with same CATH topology
1QVRA 3WDDA 3FH2A 4HH6A 4Y0CA 1MBUA 4IODA 3WDEA 1K6KA 1KHYA 1KSFX 3WDCA 5GUIA 2K77A 1MBXA 1R6BX 1R6QA 5HBNA 1MBVA 3ZRIA 3ZRJA 2Y1QA 4P15A 1R6CX 4HH5A 1MG9B 1LZWB 3PXGA 3WDBA 4UQWA 3FESA 1R6OA 4IRFA 4Y0BA 2Y1RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QVR A;  3WDD A;  3FH2 A;  4HH6 A;  4Y0C A;  1MBU A;  4IOD A;  3WDE A;  1K6K A;  1KHY A;  1KSF X;  3WDC A;  5GUI A;  2K77 A;  1MBX A;  1R6B X;  1R6Q A;  5HBN A;  1MBV A;  3ZRI A;  3ZRJ A;  2Y1Q A;  4P15 A;  1R6C X;  4HH5 A;  1MG9 B;  1LZW B;  3PXG A;  3WDB A;  4UQW A;  3FES A;  1R6O A;  4IRF A;  4Y0B A;  2Y1R A; 
#chains in the Genus database with same CATH topology
 1QVR A;  3WDD A;  3FH2 A;  4HH6 A;  4Y0C A;  1MBU A;  4IOD A;  3WDE A;  1K6K A;  1KHY A;  1KSF X;  3WDC A;  5GUI A;  2K77 A;  1MBX A;  1R6B X;  1R6Q A;  5HBN A;  1MBV A;  3ZRI A;  3ZRJ A;  2Y1Q A;  4P15 A;  1R6C X;  4HH5 A;  1MG9 B;  1LZW B;  3PXG A;  3WDB A;  4UQW A;  3FES A;  1R6O A;  4IRF A;  4Y0B A;  2Y1R A; 
#chains in the Genus database with same CATH homology
 1QVR A;  3WDD A;  3FH2 A;  4HH6 A;  4Y0C A;  1MBU A;  4IOD A;  3WDE A;  1K6K A;  1KHY A;  1KSF X;  3WDC A;  5GUI A;  2K77 A;  1MBX A;  1R6B X;  1R6Q A;  5HBN A;  1MBV A;  3ZRI A;  3ZRJ A;  2Y1Q A;  4P15 A;  1R6C X;  4HH5 A;  1MG9 B;  1LZW B;  3PXG A;  3WDB A;  4UQW A;  3FES A;  1R6O A;  4IRF A;  4Y0B A;  2Y1R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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