5GUJA

Crystal structure of the bacillus subtilis dnag rna polymerase domain, natural degradation of full length dnag
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
324
structure length
324
Chain Sequence
SGEQKMAEAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRGFSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRALGSQQPKYMNSPETPLFHKSKLLYNFYKARLHIRKQERAVLFEGFADVISAVSSDVKESIATMGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASELLQKKGCKVRVAMIPDGLDPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLSGSLEQEVYVKQLASEFSLSQESLTEQLSVFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA primase
publication title Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria
pubmed doi rcsb
source organism Bacillus subtilis (strain 168)
molecule tags Transferase
total genus 113
structure length 324
sequence length 324
ec nomenclature ec 2.7.7.-:
pdb deposition date 2016-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01751 Toprim Toprim domain
A PF08275 Toprim_N DNA primase catalytic core, N-terminal domain
A PF10410 DnaB_bind DnaB-helicase binding domain of primase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1360.10 Alpha Beta 3-Layer(aba) Sandwich Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 5gujA02
3.90.980.10 Alpha Beta Alpha-Beta Complex DNA primase DNAg catalytic core, N-terminal domain DNA primase, catalytic core, N-terminal domain 5gujA01
4O6OA 4EDTA 4EDGA 1T6T1 1VDDA 4EDVA 4EDKA 4O6PB 1D3YA 1EQNA 2Q2EA 2ZBKA 2V1CA 3VDUA 3VDPA 2AU3A 3VE5A 1DDEA 1DD9A 4EE1A 4E2KA 5GUJA 4EDRA 4JCVA 3B39A
chains in the Genus database with same CATH superfamily
4O6OA 4EDTA 4EDGA 1T6T1 2FCJA 1VDDA 4EDVA 4EDKA 4O6PB 1D3YA 1EQNA 2Q2EA 2ZBKA 2V1CA 3VDUA 3VDPA 2AU3A 3VE5A 1DDEA 1DD9A 4EE1A 4E2KA 5GUJA 4EDRA 2I5RA 4JCVA 3B39A
chains in the Genus database with same CATH topology
4O6OA 4EDTA 4EDGA 1T6T1 1VDDA 4EDVA 4EDKA 4O6PB 1D3YA 1EQNA 2Q2EA 2ZBKA 2V1CA 3VDUA 3VDPA 2AU3A 3VE5A 1DDEA 1DD9A 4EE1A 4E2KA 5GUJA 4EDRA 4JCVA 3B39A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O6O A;  4EDT A;  4EDG A;  1T6T 1;  1VDD A;  4EDV A;  4EDK A;  4O6P B;  1D3Y A;  1EQN A;  2Q2E A;  2ZBK A;  2V1C A;  3VDU A;  3VDP A;  2AU3 A;  3VE5 A;  1DDE A;  1DD9 A;  4EE1 A;  4E2K A;  5GUJ A;  4EDR A;  4JCV A;  3B39 A; 
#chains in the Genus database with same CATH topology
 4O6O A;  4EDT A;  4EDG A;  1T6T 1;  2FCJ A;  1VDD A;  4EDV A;  4EDK A;  4O6P B;  1D3Y A;  1EQN A;  2Q2E A;  2ZBK A;  2V1C A;  3VDU A;  3VDP A;  2AU3 A;  3VE5 A;  1DDE A;  1DD9 A;  4EE1 A;  4E2K A;  5GUJ A;  4EDR A;  2I5R A;  4JCV A;  3B39 A; 
#chains in the Genus database with same CATH homology
 4O6O A;  4EDT A;  4EDG A;  1T6T 1;  1VDD A;  4EDV A;  4EDK A;  4O6P B;  1D3Y A;  1EQN A;  2Q2E A;  2ZBK A;  2V1C A;  3VDU A;  3VDP A;  2AU3 A;  3VE5 A;  1DDE A;  1DD9 A;  4EE1 A;  4E2K A;  5GUJ A;  4EDR A;  4JCV A;  3B39 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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