5GV0A

Crystal structure of the membrane-proximal domain of mouse lysosome-associated membrane protein 1 (lamp-1)
Total Genus 35
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
162
structure length
162
Chain Sequence
DPTVSKYNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPNDTSSGSCGINLVTLKVENKNRALELQFGMNASSSLFFLQGVRLNMTLPDALVPTFSISNHSLKALQATVGNSYKCNTEEHIFVSKMLSLNVFSVQVQAFKVDSDRFGSVEECVQDG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
source organism Mus musculus
publication title Lysosome-associated membrane proteins-1 and -2 (LAMP-1 and LAMP-2) assemble via distinct modes
pubmed doi rcsb
molecule keywords Lysosome-associated membrane glycoprotein 1
total genus 35
structure length 162
sequence length 162
ec nomenclature
pdb deposition date 2016-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01299 Lamp Lysosome-associated membrane glycoprotein (Lamp)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.110 Mainly Beta Beta Barrel Porin Porin 5gv0A00
4AKMA 5GV0A
chains in the Genus database with same CATH superfamily
3AAEA 4RLBA 2IWWA 3LK41 4D5UA 4N75A 4PR7A 4FOZA 4KRAA 3KVDD 5ADXL 2Y2XA 4U9CA 2Y0KA 4FZLA 4XNLA 4K3BA 3BRZA 2F1TA 4PUXA 2N2LA 4AYMC 1ZHYA 2YPVA 2PRNA 2ERVA 3PF1A 5G39A 3AA1B 4Z3TA 1P4TA 1IZNA 4O4XA 4FSPA 2K4TA 2ZLDA 1Q9FA 3POUA 4G75A 2F1VA 4XNKA 5B66O 1THQA 3AA7A 5G26A 3AA6B 5DL5A 5DL7A 4F4BA 1T1LA 1YS5A 1T16A 2XTRA 3BRYA 3POXA 2R89A 4O3YA 4RLCA 3NSGA 3AA0B 4FZNA 1MM4A 4FESA 2K0LA 2KXPA 1HXUA 2R8AA 2Y0LA 3EMNX 3POQA 1G90A 5DL8A 5EE2A 3AA0A 1ZHWA 4KR8A 5KAIO 3WI5A 1OPFA 4FRXA 4AYDC 4D65A 1ZHZA 1ZHXA 4E1TA 2AXTO 1GFPA 4UB6O 4FT6A 3LK42 5TISO 2Y0HA 4FZMA 3VE2A 2QTKA 3DA4A 4N58A 4E1SA 4KR4A 2OMFA 3HOLA 5D5DA 3UPGA 3A2SX 3KZIO 2F1CX 2YNKA 3JTYA 4FQEA 3SY9A 2O4VA 1BXWA 2Y7SA 3DA3A 1HXXA 1E54A 5JDPA 3HW9A 1IZNB 2XE2A 3T24A 2XG6A 4BUMX 4RJWA 3VZWX 2PORA 3AA7B 4LSIA 5IYUA 1MPFA 3PRNA 3SZVA 1GFQA 3UU2A 3UAQA 2WJRA 5DL6A 2WJQA 1Q9GA 5G3AA 2KXPB 4AUIA 3QRAA 5E79O 4O3WA 2XMXA 4G76A 5GTHO 3BS0A 3AAAB 2R4PA 6PRNA 4AZLA 4D64A 2IWVA 3AAAA 1S5LO 4O49A 3T20A 4FUVA 4N59A 4RJXA 4O3ZA 2W80C 3PORA 3RBHA 3SYBA 1QJ8A 1BH3A 1BT9A 2R4LA 3LK3B 4GHBA 4AKRA 4UB8O 3DZMA 1OSMA 3A0HO 8PRNA 4C00A 3LK3A 4LSEA 3SZDA 1PRNA 2J1NA 2R88A 1GFOA 2KDYA 7PRNA 2GE4A 2KC0A 4N74A 5GV0A 4GF4A 3A0BO 3DWOX 2XE1A 3WI4A 2XE3A 3LK2B 4AYID 3GP6A 5AFUL 2LHFA 4GCQA 3VZTX 2FGRA 5FVNA 3LK2A 1ORMA 5KAFO 3JCUO 2KZ7B 4FMSA 3TZGA 2FGQX 3SY7A 2XE5A 2W81C 3VY8X 2R4NA 4QQ1A 3FYXA 4K3CA 2KZ7A 1PHOA 4O4UA 3T0SA 2M07A 4JCHA 4LSHA 1MM5A 3WU2O 2X27X 3DWNA 1QJ9A 3PGRA 4O3XB 3V8UA 1H6S1 3PGSA 4GCPA 2ODJA 3VE1A 2N2MA 2X9KA 5PRNA 4AKRB 5GTIO 1ZHTA 5AFUK 2JMMA 1GFMA 3K19A 3PQUA 3VY9X 2ZFGA 4C4VB 2J4UP 2LFUA 3G7GA 3QRCA 3HOEA 4AFKA 4C4VA 3O0EA 1QJPA 2MNHA 4FSOA 4PJ0O 4AYNA 4AYEC 3AA1A 2M06A 3HWBA 3VZUX 1HXTA 4C69X 5ADXK 3SYSA 4LSFA 2WVPA 3PGUA 2MHLA 2JQYA 4GCSA 2XTQA 4RL9A 3NJTA 5B5EO 4JFBA 1GFNA 3AA6A 4AKMA 4CTDA 4FRTA 3AAEB 4B61A 5H2FO 2R4OA 5T5FA 5G38A 3C5OA 4IL6O 3PQSA
chains in the Genus database with same CATH topology
3AAEA 4RLBA 3LK41 4D5UA 4FOZA 4KRAA 3KVDD 5ADXL 2Y2XA 4U9CA 2Y0KA 4FZLA 4XNLA 2F1TA 4PUXA 2N2LA 4AYMC 1ZHYA 2YPVA 2PRNA 2ERVA 3AA1B 4Z3TA 1P4TA 1IZNA 4O4XA 4FSPA 2ZLDA 1Q9FA 3POUA 4G75A 2F1VA 4XNKA 1THQA 3AA7A 5G26A 3AA6B 5DL5A 4F4BA 3T20A 1YS5A 2XTRA 3POXA 4O3YA 4RLCA 3NSGA 3AA0B 4FZNA 1MM4A 4FESA 2K0LA 2KXPA 1HXUA 2Y0LA 3EMNX 3POQA 1G90A 5DL8A 5EE2A 3AA0A 1ZHWA 4KR8A 3WI5A 1OPFA 4FRXA 4AYDC 4D65A 1ZHZA 1ZHXA 4E1TA 1GFPA 4FT6A 3LK42 4E1SA 2Y0HA 4FZMA 3VE2A 2QTKA 3DA4A 4N58A 4KR4A 2OMFA 3HOLA 5D5DA 3UPGA 3A2SX 2YNKA 3JTYA 3SY9A 2O4VA 1BXWA 2Y7SA 3DA3A 1HXXA 1E54A 5JDPA 3HW9A 1IZNB 2XE2A 3T24A 2XG6A 4BUMX 4RJWA 3VZWX 2PORA 3AA7B 4LSIA 5IYUA 1MPFA 3PRNA 3SZVA 1GFQA 3UU2A 3UAQA 5DL6A 1Q9GA 2KXPB 4AUIA 3QRAA 4O3WA 2XMXA 4G76A 3AAAB 6PRNA 4AZLA 4D64A 3AAAA 4O49A 4FUVA 4N59A 4RJXA 4O3ZA 2W80C 3PORA 3RBHA 3SYBA 1QJ8A 1BH3A 1BT9A 3LK3B 4GHBA 4AKRA 1OSMA 8PRNA 3LK3A 4LSEA 3SZDA 1PRNA 2J1NA 1GFOA 2KDYA 7PRNA 2GE4A 2KC0A 5GV0A 4GF4A 2XE1A 3WI4A 2XE3A 3LK2B 4AYID 3GP6A 5AFUL 2LHFA 4GCQA 3VZTX 2FGRA 5FVNA 3LK2A 1ORMA 2KZ7B 4FMSA 3TZGA 2FGQX 3SY7A 2XE5A 2W81C 3VY8X 4QQ1A 3FYXA 2KZ7A 1PHOA 4O4UA 3T0SA 2M07A 4JCHA 4LSHA 1MM5A 2X27X 1QJ9A 4O3XB 3V8UA 1H6S1 4GCPA 2ODJA 3VE1A 2N2MA 5PRNA 4AKRB 1ZHTA 5AFUK 2JMMA 1GFMA 3K19A 3PQUA 3VY9X 2ZFGA 2J4UP 2LFUA 3G7GA 3QRCA 3HOEA 4AFKA 3O0EA 1QJPA 2MNHA 4FSOA 4AYNA 4AYEC 3AA1A 2M06A 3HWBA 3VZUX 1HXTA 4C69X 5ADXK 3SYSA 4LSFA 4GCSA 4RL9A 2MHLA 2XTQA 4JFBA 1GFNA 3AA6A 4AKMA 4FRTA 3AAEB 4B61A 2K4TA 5T5FA 3C5OA 5DL7A 3PQSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AKM A;  5GV0 A; 
#chains in the Genus database with same CATH topology
 3AAE A;  4RLB A;  2IWW A;  3LK4 1;  4D5U A;  4N75 A;  4PR7 A;  4FOZ A;  4KRA A;  3KVD D;  5ADX L;  2Y2X A;  4U9C A;  2Y0K A;  4FZL A;  4XNL A;  4K3B A;  3BRZ A;  2F1T A;  4PUX A;  2N2L A;  4AYM C;  1ZHY A;  2YPV A;  2PRN A;  2ERV A;  3PF1 A;  5G39 A;  3AA1 B;  4Z3T A;  1P4T A;  1IZN A;  4O4X A;  4FSP A;  2K4T A;  2ZLD A;  1Q9F A;  3POU A;  4G75 A;  2F1V A;  4XNK A;  5B66 O;  1THQ A;  3AA7 A;  5G26 A;  3AA6 B;  5DL5 A;  5DL7 A;  4F4B A;  1T1L A;  1YS5 A;  1T16 A;  2XTR A;  3BRY A;  3POX A;  2R89 A;  4O3Y A;  4RLC A;  3NSG A;  3AA0 B;  4FZN A;  1MM4 A;  4FES A;  2K0L A;  2KXP A;  1HXU A;  2R8A A;  2Y0L A;  3EMN X;  3POQ A;  1G90 A;  5DL8 A;  5EE2 A;  3AA0 A;  1ZHW A;  4KR8 A;  5KAI O;  3WI5 A;  1OPF A;  4FRX A;  4AYD C;  4D65 A;  1ZHZ A;  1ZHX A;  4E1T A;  2AXT O;  1GFP A;  4UB6 O;  4FT6 A;  3LK4 2;  5TIS O;  2Y0H A;  4FZM A;  3VE2 A;  2QTK A;  3DA4 A;  4N58 A;  4E1S A;  4KR4 A;  2OMF A;  3HOL A;  5D5D A;  3UPG A;  3A2S X;  3KZI O;  2F1C X;  2YNK A;  3JTY A;  4FQE A;  3SY9 A;  2O4V A;  1BXW A;  2Y7S A;  3DA3 A;  1HXX A;  1E54 A;  5JDP A;  3HW9 A;  1IZN B;  2XE2 A;  3T24 A;  2XG6 A;  4BUM X;  4RJW A;  3VZW X;  2POR A;  3AA7 B;  4LSI A;  5IYU A;  1MPF A;  3PRN A;  3SZV A;  1GFQ A;  3UU2 A;  3UAQ A;  2WJR A;  5DL6 A;  2WJQ A;  1Q9G A;  5G3A A;  2KXP B;  4AUI A;  3QRA A;  5E79 O;  4O3W A;  2XMX A;  4G76 A;  5GTH O;  3BS0 A;  3AAA B;  2R4P A;  6PRN A;  4AZL A;  4D64 A;  2IWV A;  3AAA A;  1S5L O;  4O49 A;  3T20 A;  4FUV A;  4N59 A;  4RJX A;  4O3Z A;  2W80 C;  3POR A;  3RBH A;  3SYB A;  1QJ8 A;  1BH3 A;  1BT9 A;  2R4L A;  3LK3 B;  4GHB A;  4AKR A;  4UB8 O;  3DZM A;  1OSM A;  3A0H O;  8PRN A;  4C00 A;  3LK3 A;  4LSE A;  3SZD A;  1PRN A;  2J1N A;  2R88 A;  1GFO A;  2KDY A;  7PRN A;  2GE4 A;  2KC0 A;  4N74 A;  5GV0 A;  4GF4 A;  3A0B O;  3DWO X;  2XE1 A;  3WI4 A;  2XE3 A;  3LK2 B;  4AYI D;  3GP6 A;  5AFU L;  2LHF A;  4GCQ A;  3VZT X;  2FGR A;  5FVN A;  3LK2 A;  1ORM A;  5KAF O;  3JCU O;  2KZ7 B;  4FMS A;  3TZG A;  2FGQ X;  3SY7 A;  2XE5 A;  2W81 C;  3VY8 X;  2R4N A;  4QQ1 A;  3FYX A;  4K3C A;  2KZ7 A;  1PHO A;  4O4U A;  3T0S A;  2M07 A;  4JCH A;  4LSH A;  1MM5 A;  3WU2 O;  2X27 X;  3DWN A;  1QJ9 A;  3PGR A;  4O3X B;  3V8U A;  1H6S 1;  3PGS A;  4GCP A;  2ODJ A;  3VE1 A;  2N2M A;  2X9K A;  5PRN A;  4AKR B;  5GTI O;  1ZHT A;  5AFU K;  2JMM A;  1GFM A;  3K19 A;  3PQU A;  3VY9 X;  2ZFG A;  4C4V B;  2J4U P;  2LFU A;  3G7G A;  3QRC A;  3HOE A;  4AFK A;  4C4V A;  3O0E A;  1QJP A;  2MNH A;  4FSO A;  4PJ0 O;  4AYN A;  4AYE C;  3AA1 A;  2M06 A;  3HWB A;  3VZU X;  1HXT A;  4C69 X;  5ADX K;  3SYS A;  4LSF A;  2WVP A;  3PGU A;  2MHL A;  2JQY A;  4GCS A;  2XTQ A;  4RL9 A;  3NJT A;  5B5E O;  4JFB A;  1GFN A;  3AA6 A;  4AKM A;  4CTD A;  4FRT A;  3AAE B;  4B61 A;  5H2F O;  2R4O A;  5T5F A;  5G38 A;  3C5O A;  4IL6 O;  3PQS A; 
#chains in the Genus database with same CATH homology
 3AAE A;  4RLB A;  3LK4 1;  4D5U A;  4FOZ A;  4KRA A;  3KVD D;  5ADX L;  2Y2X A;  4U9C A;  2Y0K A;  4FZL A;  4XNL A;  2F1T A;  4PUX A;  2N2L A;  4AYM C;  1ZHY A;  2YPV A;  2PRN A;  2ERV A;  3AA1 B;  4Z3T A;  1P4T A;  1IZN A;  4O4X A;  4FSP A;  2ZLD A;  1Q9F A;  3POU A;  4G75 A;  2F1V A;  4XNK A;  1THQ A;  3AA7 A;  5G26 A;  3AA6 B;  5DL5 A;  4F4B A;  3T20 A;  1YS5 A;  2XTR A;  3POX A;  4O3Y A;  4RLC A;  3NSG A;  3AA0 B;  4FZN A;  1MM4 A;  4FES A;  2K0L A;  2KXP A;  1HXU A;  2Y0L A;  3EMN X;  3POQ A;  1G90 A;  5DL8 A;  5EE2 A;  3AA0 A;  1ZHW A;  4KR8 A;  3WI5 A;  1OPF A;  4FRX A;  4AYD C;  4D65 A;  1ZHZ A;  1ZHX A;  4E1T A;  1GFP A;  4FT6 A;  3LK4 2;  4E1S A;  2Y0H A;  4FZM A;  3VE2 A;  2QTK A;  3DA4 A;  4N58 A;  4KR4 A;  2OMF A;  3HOL A;  5D5D A;  3UPG A;  3A2S X;  2YNK A;  3JTY A;  3SY9 A;  2O4V A;  1BXW A;  2Y7S A;  3DA3 A;  1HXX A;  1E54 A;  5JDP A;  3HW9 A;  1IZN B;  2XE2 A;  3T24 A;  2XG6 A;  4BUM X;  4RJW A;  3VZW X;  2POR A;  3AA7 B;  4LSI A;  5IYU A;  1MPF A;  3PRN A;  3SZV A;  1GFQ A;  3UU2 A;  3UAQ A;  5DL6 A;  1Q9G A;  2KXP B;  4AUI A;  3QRA A;  4O3W A;  2XMX A;  4G76 A;  3AAA B;  6PRN A;  4AZL A;  4D64 A;  3AAA A;  4O49 A;  4FUV A;  4N59 A;  4RJX A;  4O3Z A;  2W80 C;  3POR A;  3RBH A;  3SYB A;  1QJ8 A;  1BH3 A;  1BT9 A;  3LK3 B;  4GHB A;  4AKR A;  1OSM A;  8PRN A;  3LK3 A;  4LSE A;  3SZD A;  1PRN A;  2J1N A;  1GFO A;  2KDY A;  7PRN A;  2GE4 A;  2KC0 A;  5GV0 A;  4GF4 A;  2XE1 A;  3WI4 A;  2XE3 A;  3LK2 B;  4AYI D;  3GP6 A;  5AFU L;  2LHF A;  4GCQ A;  3VZT X;  2FGR A;  5FVN A;  3LK2 A;  1ORM A;  2KZ7 B;  4FMS A;  3TZG A;  2FGQ X;  3SY7 A;  2XE5 A;  2W81 C;  3VY8 X;  4QQ1 A;  3FYX A;  2KZ7 A;  1PHO A;  4O4U A;  3T0S A;  2M07 A;  4JCH A;  4LSH A;  1MM5 A;  2X27 X;  1QJ9 A;  4O3X B;  3V8U A;  1H6S 1;  4GCP A;  2ODJ A;  3VE1 A;  2N2M A;  5PRN A;  4AKR B;  1ZHT A;  5AFU K;  2JMM A;  1GFM A;  3K19 A;  3PQU A;  3VY9 X;  2ZFG A;  2J4U P;  2LFU A;  3G7G A;  3QRC A;  3HOE A;  4AFK A;  3O0E A;  1QJP A;  2MNH A;  4FSO A;  4AYN A;  4AYE C;  3AA1 A;  2M06 A;  3HWB A;  3VZU X;  1HXT A;  4C69 X;  5ADX K;  3SYS A;  4LSF A;  4GCS A;  4RL9 A;  2MHL A;  2XTQ A;  4JFB A;  1GFN A;  3AA6 A;  4AKM A;  4FRT A;  3AAE B;  4B61 A;  2K4T A;  5T5F A;  3C5O A;  5DL7 A;  3PQS A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...