5GV0A

Crystal structure of the membrane-proximal domain of mouse lysosome-associated membrane protein 1 (lamp-1)
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
162
structure length
162
Chain Sequence
b'DPTVSKYNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPNDTSSGSCGINLVTLKVENKNRALELQFGMNASSSLFFLQGVRLNMTLPDALVPTFSISNHSLKALQATVGNSYKCNTEEHIFVSKMLSLNVFSVQVQAFKVDSDRFGSVEECVQDG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Lysosome-associated membrane proteins-1 and -2 (LAMP-1 and LAMP-2) assemble via distinct modes
pubmed doi rcsb
molecule keywords Lysosome-associated membrane glycoprotein 1
source organism Mus musculus
molecule tags Membrane protein
total genus 35
structure length 162
sequence length 162
ec nomenclature
pdb deposition date 2016-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01299 Lamp Lysosome-associated membrane glycoprotein (Lamp)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.110 Mainly Beta Beta Barrel Porin Porin 5gv0A00
5GV0A 4AKMA
chains in the Genus database with same CATH superfamily
3PGSA 4AKRA 5FVNA 5D5DA 1BXWA 4FUVA 3VY9X 2KZ7B 2N2LA 5DL7A 5PRNA 4Z3TA 2FGRA 2JMMA 4JCHA 4XNLA 3WI4A 3SZVA 2F1TA 2X9KA 3HWBA 1G90A 5DL6A 3EMNX 2PORA 4O3ZA 4FQEA 1ZHXA 4O3XB 1HXTA 2ODJA 5IYUA 3HOLA 3BRYA 3DA4A 4UB8O 3AAAA 4FT6A 3KVDD 5GV0A 6PRNA 2F1VA 1GFPA 1QJPA 2R4PA 4K3BA 3T0SA 3QRCA 4C4VA 1OPFA 4FSPA 4QQ1A 1PHOA 3A2SX 4BUMX 4FZMA 4AKRB 2MHLA 1H6S1 2M06A 3PQUA 3G7GA 4FZNA 4O3YA 3VE2A 3POXA 5G26A 1GFOA 4F4BA 1MM4A 2MNHA 3LK3A 4O3WA 3VY8X 2M07A 4RLBA 2Y2XA 2Y0KA 3GP6A 3PORA 5KAIO 2AXTO 2W80C 3KZIO 5DL8A 5E79O 3NSGA 3A0HO 3T24A 2IWVA 4AUIA 1ZHZA 2ERVA 1ZHYA 3PF1A 4JFBA 4N59A 1HXXA 2K0LA 2W81C 3FYXA 3POQA 3VZWX 2J4UP 1ZHTA 5GTIO 7PRNA 4GF4A 3A0BO 3LK42 1GFMA 2WJRA 3BS0A 1P4TA 4O4XA 1QJ8A 4D65A 3AAAB 5B66O 3TZGA 3RBHA 3JCUO 3SYBA 1IZNB 2O4VA 2ZLDA 4CTDA 1ORMA 4AYNA 3POUA 3VE1A 2Y0LA 3WI5A 2ZFGA 5AFUK 1IZNA 4PUXA 2XTQA 3T20A 2XE1A 4E1TA 3UPGA 3SYSA 2XE3A 2R4LA 2LHFA 1ZHWA 3AAEA 5G38A 2K4TA 2LFUA 2XE2A 3LK3B 5ADXK 2XG6A 2YPVA 1GFQA 3QRAA 4AYEC 2J1NA 3HW9A 4LSIA 4AZLA 4FRTA 2QTKA 1T1LA 8PRNA 4RJXA 2XE5A 5KAFO 2X27X 3AA7A 1GFNA 2WVPA 2Y0HA 3DA3A 1T16A 2KXPA 2N2MA 4PR7A 5H2FO 3AA1A 4U9CA 1PRNA 4G75A 4E1SA 3AA6B 3K19A 4LSFA 1MM5A 3DZMA 4K3CA 3LK2A 3NJTA 1QJ9A 4FESA 3O0EA 3AA6A 4D5UA 5TISO 4KR4A 4LSHA 5JDPA 3HOEA 2PRNA 2F1CX 4G76A 4GCPA 2R88A 4O49A 4O4UA 2KC0A 2XTRA 4RL9A 5G3AA 1THQA 5T5FA 3PRNA 2XMXA 2YNKA 3AAEB 3PGRA 3UAQA 3WU2O 4AKMA 4UB6O 4D64A 2JQYA 5B5EO 2OMFA 1OSMA 2WJQA 4AFKA 4PJ0O 4GCSA 3VZUX 2FGQX 1YS5A 4FOZA 4KR8A 3AA7B 1HXUA 1Q9FA 3BRZA 4XNKA 2KXPB 1BT9A 1S5LO 2GE4A 3PQSA 5DL5A 5G39A 3AA1B 3UU2A 3DWOX 2KZ7A 4B61A 4N58A 2Y7SA 3LK41 3V8UA 4AYDC 4C69X 2R4OA 2IWWA 3DWNA 1E54A 3LK2B 4N75A 1BH3A 2R89A 4RJWA 3AA0B 4IL6O 4FRXA 3SY7A 2R4NA 3C5OA 4FZLA 5AFUL 3AA0A 4FMSA 3SY9A 4C4VB 3SZDA 4RLCA 4GCQA 5ADXL 1MPFA 2KDYA 4N74A 5GTHO 4GHBA 4AYID 3PGUA 4C00A 4LSEA 5EE2A 3JTYA 2R8AA 4FSOA 1Q9GA 4KRAA 4AYMC 3VZTX
chains in the Genus database with same CATH topology
4AKRA 5FVNA 5D5DA 1BXWA 4FUVA 3VY9X 2KZ7B 2N2LA 5DL7A 5PRNA 4Z3TA 2FGRA 2JMMA 4JCHA 4XNLA 3WI4A 3SZVA 2F1TA 3HWBA 1G90A 5DL6A 3EMNX 2PORA 4O3ZA 1ZHXA 4O3XB 1HXTA 2ODJA 5IYUA 3HOLA 3DA4A 3AAAA 4FT6A 3KVDD 5GV0A 6PRNA 2F1VA 1GFPA 1QJPA 3T0SA 3QRCA 1OPFA 4FSPA 4QQ1A 1PHOA 3A2SX 4BUMX 4FZMA 4AKRB 2MHLA 1H6S1 2M06A 3PQUA 3G7GA 4FZNA 4O3YA 3VE2A 3POXA 5G26A 1GFOA 1MM4A 2MNHA 3LK3A 4O3WA 3VY8X 2M07A 4RLBA 2Y2XA 2Y0KA 3GP6A 3PORA 2W80C 5DL8A 4AUIA 3NSGA 3T24A 1ZHZA 2ERVA 1ZHYA 4JFBA 4N59A 3VZWX 1HXXA 2K0LA 2W81C 3FYXA 3POQA 2J4UP 1ZHTA 7PRNA 4GF4A 3LK42 1GFMA 1P4TA 4O4XA 1QJ8A 4D65A 3AAAB 3TZGA 3RBHA 3SYBA 1IZNB 2O4VA 2ZLDA 1ORMA 4AYNA 3POUA 3VE1A 2Y0LA 3WI5A 2ZFGA 5AFUK 1IZNA 4PUXA 2XTQA 3T20A 2XE1A 4E1TA 3UPGA 3SYSA 2XE3A 2LHFA 1ZHWA 3AAEA 2K4TA 2XE2A 2LFUA 3LK3B 5ADXK 2XG6A 2YPVA 1GFQA 3QRAA 4AYEC 2J1NA 3HW9A 4LSIA 4AZLA 4FRTA 2QTKA 8PRNA 4RJXA 2XE5A 2X27X 3AA7A 1GFNA 2Y0HA 3DA3A 2N2MA 2KXPA 3AA1A 4U9CA 1PRNA 4G75A 4E1SA 3AA6B 3K19A 4LSFA 1MM5A 3LK2A 1QJ9A 4FESA 3O0EA 3AA6A 4D5UA 4KR4A 4LSHA 5JDPA 3HOEA 2PRNA 4G76A 4GCPA 4O4UA 4O49A 4RL9A 5T5FA 2KC0A 2XTRA 1THQA 4AKMA 3PRNA 2XMXA 2YNKA 3AAEB 3UAQA 4F4BA 4D64A 2OMFA 1OSMA 4AFKA 4GCSA 3VZUX 2FGQX 1YS5A 4FOZA 4KR8A 3AA7B 1HXUA 1Q9FA 4XNKA 2KXPB 1BT9A 5DL5A 2GE4A 3PQSA 3UU2A 4B61A 3AA1B 2KZ7A 4N58A 2Y7SA 3LK41 3V8UA 4AYDC 4C69X 1E54A 3LK2B 4RJWA 1BH3A 3AA0B 4FRXA 3SY7A 3C5OA 4FZLA 5AFUL 3AA0A 4FMSA 3SY9A 3SZDA 4RLCA 4GCQA 5ADXL 1MPFA 2KDYA 4GHBA 4AYID 4LSEA 5EE2A 3JTYA 4FSOA 1Q9GA 4KRAA 4AYMC 3VZTX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GV0 A;  4AKM A; 
#chains in the Genus database with same CATH topology
 3PGS A;  4AKR A;  5FVN A;  5D5D A;  1BXW A;  4FUV A;  3VY9 X;  2KZ7 B;  2N2L A;  5DL7 A;  5PRN A;  4Z3T A;  2FGR A;  2JMM A;  4JCH A;  4XNL A;  3WI4 A;  3SZV A;  2F1T A;  2X9K A;  3HWB A;  1G90 A;  5DL6 A;  3EMN X;  2POR A;  4O3Z A;  4FQE A;  1ZHX A;  4O3X B;  1HXT A;  2ODJ A;  5IYU A;  3HOL A;  3BRY A;  3DA4 A;  4UB8 O;  3AAA A;  4FT6 A;  3KVD D;  5GV0 A;  6PRN A;  2F1V A;  1GFP A;  1QJP A;  2R4P A;  4K3B A;  3T0S A;  3QRC A;  4C4V A;  1OPF A;  4FSP A;  4QQ1 A;  1PHO A;  3A2S X;  4BUM X;  4FZM A;  4AKR B;  2MHL A;  1H6S 1;  2M06 A;  3PQU A;  3G7G A;  4FZN A;  4O3Y A;  3VE2 A;  3POX A;  5G26 A;  1GFO A;  4F4B A;  1MM4 A;  2MNH A;  3LK3 A;  4O3W A;  3VY8 X;  2M07 A;  4RLB A;  2Y2X A;  2Y0K A;  3GP6 A;  3POR A;  5KAI O;  2AXT O;  2W80 C;  3KZI O;  5DL8 A;  5E79 O;  3NSG A;  3A0H O;  3T24 A;  2IWV A;  4AUI A;  1ZHZ A;  2ERV A;  1ZHY A;  3PF1 A;  4JFB A;  4N59 A;  1HXX A;  2K0L A;  2W81 C;  3FYX A;  3POQ A;  3VZW X;  2J4U P;  1ZHT A;  5GTI O;  7PRN A;  4GF4 A;  3A0B O;  3LK4 2;  1GFM A;  2WJR A;  3BS0 A;  1P4T A;  4O4X A;  1QJ8 A;  4D65 A;  3AAA B;  5B66 O;  3TZG A;  3RBH A;  3JCU O;  3SYB A;  1IZN B;  2O4V A;  2ZLD A;  4CTD A;  1ORM A;  4AYN A;  3POU A;  3VE1 A;  2Y0L A;  3WI5 A;  2ZFG A;  5AFU K;  1IZN A;  4PUX A;  2XTQ A;  3T20 A;  2XE1 A;  4E1T A;  3UPG A;  3SYS A;  2XE3 A;  2R4L A;  2LHF A;  1ZHW A;  3AAE A;  5G38 A;  2K4T A;  2LFU A;  2XE2 A;  3LK3 B;  5ADX K;  2XG6 A;  2YPV A;  1GFQ A;  3QRA A;  4AYE C;  2J1N A;  3HW9 A;  4LSI A;  4AZL A;  4FRT A;  2QTK A;  1T1L A;  8PRN A;  4RJX A;  2XE5 A;  5KAF O;  2X27 X;  3AA7 A;  1GFN A;  2WVP A;  2Y0H A;  3DA3 A;  1T16 A;  2KXP A;  2N2M A;  4PR7 A;  5H2F O;  3AA1 A;  4U9C A;  1PRN A;  4G75 A;  4E1S A;  3AA6 B;  3K19 A;  4LSF A;  1MM5 A;  3DZM A;  4K3C A;  3LK2 A;  3NJT A;  1QJ9 A;  4FES A;  3O0E A;  3AA6 A;  4D5U A;  5TIS O;  4KR4 A;  4LSH A;  5JDP A;  3HOE A;  2PRN A;  2F1C X;  4G76 A;  4GCP A;  2R88 A;  4O49 A;  4O4U A;  2KC0 A;  2XTR A;  4RL9 A;  5G3A A;  1THQ A;  5T5F A;  3PRN A;  2XMX A;  2YNK A;  3AAE B;  3PGR A;  3UAQ A;  3WU2 O;  4AKM A;  4UB6 O;  4D64 A;  2JQY A;  5B5E O;  2OMF A;  1OSM A;  2WJQ A;  4AFK A;  4PJ0 O;  4GCS A;  3VZU X;  2FGQ X;  1YS5 A;  4FOZ A;  4KR8 A;  3AA7 B;  1HXU A;  1Q9F A;  3BRZ A;  4XNK A;  2KXP B;  1BT9 A;  1S5L O;  2GE4 A;  3PQS A;  5DL5 A;  5G39 A;  3AA1 B;  3UU2 A;  3DWO X;  2KZ7 A;  4B61 A;  4N58 A;  2Y7S A;  3LK4 1;  3V8U A;  4AYD C;  4C69 X;  2R4O A;  2IWW A;  3DWN A;  1E54 A;  3LK2 B;  4N75 A;  1BH3 A;  2R89 A;  4RJW A;  3AA0 B;  4IL6 O;  4FRX A;  3SY7 A;  2R4N A;  3C5O A;  4FZL A;  5AFU L;  3AA0 A;  4FMS A;  3SY9 A;  4C4V B;  3SZD A;  4RLC A;  4GCQ A;  5ADX L;  1MPF A;  2KDY A;  4N74 A;  5GTH O;  4GHB A;  4AYI D;  3PGU A;  4C00 A;  4LSE A;  5EE2 A;  3JTY A;  2R8A A;  4FSO A;  1Q9G A;  4KRA A;  4AYM C;  3VZT X; 
#chains in the Genus database with same CATH homology
 4AKR A;  5FVN A;  5D5D A;  1BXW A;  4FUV A;  3VY9 X;  2KZ7 B;  2N2L A;  5DL7 A;  5PRN A;  4Z3T A;  2FGR A;  2JMM A;  4JCH A;  4XNL A;  3WI4 A;  3SZV A;  2F1T A;  3HWB A;  1G90 A;  5DL6 A;  3EMN X;  2POR A;  4O3Z A;  1ZHX A;  4O3X B;  1HXT A;  2ODJ A;  5IYU A;  3HOL A;  3DA4 A;  3AAA A;  4FT6 A;  3KVD D;  5GV0 A;  6PRN A;  2F1V A;  1GFP A;  1QJP A;  3T0S A;  3QRC A;  1OPF A;  4FSP A;  4QQ1 A;  1PHO A;  3A2S X;  4BUM X;  4FZM A;  4AKR B;  2MHL A;  1H6S 1;  2M06 A;  3PQU A;  3G7G A;  4FZN A;  4O3Y A;  3VE2 A;  3POX A;  5G26 A;  1GFO A;  1MM4 A;  2MNH A;  3LK3 A;  4O3W A;  3VY8 X;  2M07 A;  4RLB A;  2Y2X A;  2Y0K A;  3GP6 A;  3POR A;  2W80 C;  5DL8 A;  4AUI A;  3NSG A;  3T24 A;  1ZHZ A;  2ERV A;  1ZHY A;  4JFB A;  4N59 A;  3VZW X;  1HXX A;  2K0L A;  2W81 C;  3FYX A;  3POQ A;  2J4U P;  1ZHT A;  7PRN A;  4GF4 A;  3LK4 2;  1GFM A;  1P4T A;  4O4X A;  1QJ8 A;  4D65 A;  3AAA B;  3TZG A;  3RBH A;  3SYB A;  1IZN B;  2O4V A;  2ZLD A;  1ORM A;  4AYN A;  3POU A;  3VE1 A;  2Y0L A;  3WI5 A;  2ZFG A;  5AFU K;  1IZN A;  4PUX A;  2XTQ A;  3T20 A;  2XE1 A;  4E1T A;  3UPG A;  3SYS A;  2XE3 A;  2LHF A;  1ZHW A;  3AAE A;  2K4T A;  2XE2 A;  2LFU A;  3LK3 B;  5ADX K;  2XG6 A;  2YPV A;  1GFQ A;  3QRA A;  4AYE C;  2J1N A;  3HW9 A;  4LSI A;  4AZL A;  4FRT A;  2QTK A;  8PRN A;  4RJX A;  2XE5 A;  2X27 X;  3AA7 A;  1GFN A;  2Y0H A;  3DA3 A;  2N2M A;  2KXP A;  3AA1 A;  4U9C A;  1PRN A;  4G75 A;  4E1S A;  3AA6 B;  3K19 A;  4LSF A;  1MM5 A;  3LK2 A;  1QJ9 A;  4FES A;  3O0E A;  3AA6 A;  4D5U A;  4KR4 A;  4LSH A;  5JDP A;  3HOE A;  2PRN A;  4G76 A;  4GCP A;  4O4U A;  4O49 A;  4RL9 A;  5T5F A;  2KC0 A;  2XTR A;  1THQ A;  4AKM A;  3PRN A;  2XMX A;  2YNK A;  3AAE B;  3UAQ A;  4F4B A;  4D64 A;  2OMF A;  1OSM A;  4AFK A;  4GCS A;  3VZU X;  2FGQ X;  1YS5 A;  4FOZ A;  4KR8 A;  3AA7 B;  1HXU A;  1Q9F A;  4XNK A;  2KXP B;  1BT9 A;  5DL5 A;  2GE4 A;  3PQS A;  3UU2 A;  4B61 A;  3AA1 B;  2KZ7 A;  4N58 A;  2Y7S A;  3LK4 1;  3V8U A;  4AYD C;  4C69 X;  1E54 A;  3LK2 B;  4RJW A;  1BH3 A;  3AA0 B;  4FRX A;  3SY7 A;  3C5O A;  4FZL A;  5AFU L;  3AA0 A;  4FMS A;  3SY9 A;  3SZD A;  4RLC A;  4GCQ A;  5ADX L;  1MPF A;  2KDY A;  4GHB A;  4AYI D;  4LSE A;  5EE2 A;  3JTY A;  4FSO A;  1Q9G A;  4KRA A;  4AYM C;  3VZT X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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