5GV0A

Crystal structure of the membrane-proximal domain of mouse lysosome-associated membrane protein 1 (lamp-1)
Total Genus 35
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
162
structure length
162
Chain Sequence
DPTVSKYNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPNDTSSGSCGINLVTLKVENKNRALELQFGMNASSSLFFLQGVRLNMTLPDALVPTFSISNHSLKALQATVGNSYKCNTEEHIFVSKMLSLNVFSVQVQAFKVDSDRFGSVEECVQDG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
molecule keywords Lysosome-associated membrane glycoprotein 1
publication title Lysosome-associated membrane proteins-1 and -2 (LAMP-1 and LAMP-2) assemble via distinct modes
pubmed doi rcsb
source organism Mus musculus
total genus 35
structure length 162
sequence length 162
ec nomenclature
pdb deposition date 2016-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01299 Lamp Lysosome-associated membrane glycoprotein (Lamp)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.110 Mainly Beta Beta Barrel Porin Porin 5gv0A00
4AKMA 5GV0A
chains in the Genus database with same CATH superfamily
3HWBA 1IZNA 4O49A 4AKRB 4FQEA 3EMNX 1QJ8A 4LSHA 3SY7A 2Y0LA 4FZMA 3V8UA 4PR7A 5TISO 5AFUL 5IYUA 4JFBA 5E79O 3SZDA 2XE3A 2XTRA 2JMMA 4G76A 3PORA 4GCSA 6PRNA 3T20A 3UAQA 5KAFO 4O4XA 4AYMC 4AYNA 2XTQA 2N2LA 4KRAA 4GHBA 3WI4A 1ZHYA 2R4NA 2R88A 4D64A 5FVNA 4GCPA 5PRNA 4FRTA 2ZFGA 3AA6A 4B61A 2KZ7A 3PGRA 2Y2XA 2XE5A 3O0EA 4K3CA 3WI5A 1ZHTA 5DL7A 5G3AA 5GV0A 5ADXK 2ODJA 3LK42 4UB8O 2YNKA 4AYEC 3TZGA 1OSMA 3KZIO 3POQA 5AFUK 4LSEA 4XNKA 5G38A 1GFPA 3SZVA 2X27X 3VZWX 2R4PA 4XNLA 4C4VB 4AYID 2R4LA 3HW9A 2QTKA 4FOZA 4O3WA 8PRNA 4CTDA 4FESA 4FSOA 4N59A 4G75A 1Q9GA 3AA1B 3FYXA 4FUVA 4LSIA 4N75A 4RL9A 2Y0HA 3NSGA 4U9CA 5DL6A 3JCUO 5B66O 2LHFA 3A2SX 2XE2A 4KR4A 4IL6O 2F1TA 4FMSA 3G7GA 3UU2A 4BUMX 1BXWA 3DA4A 3SYSA 1G90A 3PQUA 4FZLA 1MPFA 2KDYA 3JTYA 2GE4A 2O4VA 2M06A 3QRAA 4FSPA 3QRCA 2IWWA 1GFNA 2KXPB 3VY8X 3AAEB 1GFQA 2R4OA 3AA0B 1QJPA 2YPVA 1PRNA 4RLCA 4AKRA 4LSFA 5GTIO 4N58A 3WU2O 2XMXA 5B5EO 3AA7B 2W81C 1S5LO 1OPFA 4PJ0O 4E1TA 3C5OA 4RLBA 3VY9X 3LK3B 1T16A 3AA1A 4O3ZA 4AUIA 4C69X 2R8AA 2M07A 1MM5A 3PF1A 1ZHZA 3DZMA 2ERVA 5T5FA 3KVDD 3VZTX 3VE1A 1BH3A 4GCQA 2PRNA 2WJQA 1GFMA 1ORMA 2XG6A 5DL5A 2XE1A 1BT9A 3BS0A 2X9KA 3DWOX 3NJTA 4FZNA 4UB6O 7PRNA 2J4UP 3UPGA 4AZLA 3DWNA 3LK2B 5H2FO 2FGRA 3K19A 4RJWA 1GFOA 4FRXA 3AA0A 5JDPA 2WJRA 4O3YA 4D65A 2KZ7B 2F1CX 3PGSA 2LFUA 3AA7A 1HXXA 4K3BA 5EE2A 1ZHXA 5ADXL 2N2MA 3AAAB 1H6S1 5KAIO 4AFKA 2WVPA 4FT6A 2MNHA 2MHLA 2F1VA 4KR8A 3RBHA 4D5UA 4F4BA 4C4VA 3VZUX 4QQ1A 1QJ9A 3HOLA 2R89A 4PUXA 2Y7SA 5G39A 5G26A 1IZNB 4RJXA 2K4TA 5GTHO 2K0LA 1MM4A 2J1NA 3LK2A 3POUA 4AKMA 1THQA 3PGUA 3DA3A 2PORA 3BRZA 1YS5A 2OMFA 4O3XB 2JQYA 3GP6A 3HOEA 2AXTO 2W80C 3PQSA 3VE2A 2ZLDA 1HXTA 5DL8A 3A0BO 3T0SA 4N74A 2KXPA 2IWVA 3AAAA 3AAEA 4GF4A 4O4UA 3T24A 1Q9FA 2FGQX 4E1SA 4Z3TA 2KC0A 3LK41 3SY9A 1ZHWA 3AA6B 4JCHA 1PHOA 1HXUA 3PRNA 1P4TA 4AYDC 3BRYA 5D5DA 3A0HO 3SYBA 1E54A 2Y0KA 4C00A 3LK3A 3POXA 1T1LA
chains in the Genus database with same CATH topology
3HWBA 1IZNA 4O49A 4AKRB 3EMNX 1QJ8A 4LSHA 3SY7A 2Y0LA 4FZMA 3V8UA 5IYUA 5AFUL 4JFBA 3SZDA 2XE3A 2XTRA 2JMMA 4G76A 3PORA 4GCSA 6PRNA 3T20A 3UAQA 4AYNA 4O4XA 4AYMC 2XTQA 2N2LA 4KRAA 4GHBA 3WI4A 1ZHYA 4D64A 5FVNA 4GCPA 5PRNA 4FRTA 2ZFGA 3AA6A 4B61A 2KZ7A 2Y2XA 2XE5A 3O0EA 3WI5A 5GV0A 1ZHTA 5DL7A 5ADXK 2ODJA 3LK42 2YNKA 4AYEC 3TZGA 1OSMA 3POQA 5AFUK 4LSEA 4XNKA 1GFPA 3SZVA 2X27X 3VZWX 4XNLA 4AYID 4FOZA 3HW9A 2QTKA 4O3WA 8PRNA 5JDPA 4FESA 4FSOA 4N59A 4G75A 1Q9GA 3AA1B 3FYXA 4FUVA 4LSIA 4RL9A 2Y0HA 3NSGA 4U9CA 5DL6A 2LHFA 3A2SX 2XE2A 4KR4A 2F1TA 4FMSA 3G7GA 3UU2A 4BUMX 1BXWA 3DA4A 3SYSA 1G90A 3PQUA 4FZLA 1MPFA 2KDYA 3JTYA 2GE4A 2O4VA 2M06A 3QRAA 4FSPA 3QRCA 1GFNA 2KXPB 3VY8X 3AAEB 1GFQA 3AA0B 1QJPA 2YPVA 1PRNA 4RLCA 4AKRA 4LSFA 4N58A 2XMXA 3AA7B 2W81C 1OPFA 4E1TA 3C5OA 4RLBA 3VY9X 3LK3B 3AA1A 4O3ZA 4AUIA 4C69X 2M07A 1MM5A 1ZHZA 5T5FA 2ERVA 3VZTX 3KVDD 3VE1A 1BH3A 4GCQA 2PRNA 1GFMA 1ORMA 2XG6A 5DL5A 2XE1A 1BT9A 7PRNA 4FZNA 2J4UP 3UPGA 4AZLA 3LK2B 2FGRA 3K19A 4RJWA 1GFOA 4FRXA 3AA0A 4O3YA 4D65A 2KZ7B 2LFUA 3AA7A 1HXXA 5EE2A 1ZHXA 5ADXL 2N2MA 3AAAB 1H6S1 4AFKA 4FT6A 2MNHA 2MHLA 2F1VA 4KR8A 3RBHA 4D5UA 4F4BA 3VZUX 4QQ1A 1QJ9A 3HOLA 4PUXA 2Y7SA 5G26A 1IZNB 4RJXA 2K4TA 2K0LA 1MM4A 2J1NA 3LK2A 3POUA 4AKMA 1THQA 3DA3A 2PORA 1YS5A 2OMFA 4O3XB 3GP6A 3HOEA 2W80C 3PQSA 3VE2A 2ZLDA 1HXTA 5DL8A 3T0SA 2KXPA 3AAAA 3AAEA 4GF4A 4O4UA 3T24A 1Q9FA 2FGQX 4E1SA 4Z3TA 2KC0A 3LK41 3SY9A 1ZHWA 3AA6B 4JCHA 1PHOA 1HXUA 3PRNA 1P4TA 4AYDC 5D5DA 3SYBA 1E54A 2Y0KA 3LK3A 3POXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AKM A;  5GV0 A; 
#chains in the Genus database with same CATH topology
 3HWB A;  1IZN A;  4O49 A;  4AKR B;  4FQE A;  3EMN X;  1QJ8 A;  4LSH A;  3SY7 A;  2Y0L A;  4FZM A;  3V8U A;  4PR7 A;  5TIS O;  5AFU L;  5IYU A;  4JFB A;  5E79 O;  3SZD A;  2XE3 A;  2XTR A;  2JMM A;  4G76 A;  3POR A;  4GCS A;  6PRN A;  3T20 A;  3UAQ A;  5KAF O;  4O4X A;  4AYM C;  4AYN A;  2XTQ A;  2N2L A;  4KRA A;  4GHB A;  3WI4 A;  1ZHY A;  2R4N A;  2R88 A;  4D64 A;  5FVN A;  4GCP A;  5PRN A;  4FRT A;  2ZFG A;  3AA6 A;  4B61 A;  2KZ7 A;  3PGR A;  2Y2X A;  2XE5 A;  3O0E A;  4K3C A;  3WI5 A;  1ZHT A;  5DL7 A;  5G3A A;  5GV0 A;  5ADX K;  2ODJ A;  3LK4 2;  4UB8 O;  2YNK A;  4AYE C;  3TZG A;  1OSM A;  3KZI O;  3POQ A;  5AFU K;  4LSE A;  4XNK A;  5G38 A;  1GFP A;  3SZV A;  2X27 X;  3VZW X;  2R4P A;  4XNL A;  4C4V B;  4AYI D;  2R4L A;  3HW9 A;  2QTK A;  4FOZ A;  4O3W A;  8PRN A;  4CTD A;  4FES A;  4FSO A;  4N59 A;  4G75 A;  1Q9G A;  3AA1 B;  3FYX A;  4FUV A;  4LSI A;  4N75 A;  4RL9 A;  2Y0H A;  3NSG A;  4U9C A;  5DL6 A;  3JCU O;  5B66 O;  2LHF A;  3A2S X;  2XE2 A;  4KR4 A;  4IL6 O;  2F1T A;  4FMS A;  3G7G A;  3UU2 A;  4BUM X;  1BXW A;  3DA4 A;  3SYS A;  1G90 A;  3PQU A;  4FZL A;  1MPF A;  2KDY A;  3JTY A;  2GE4 A;  2O4V A;  2M06 A;  3QRA A;  4FSP A;  3QRC A;  2IWW A;  1GFN A;  2KXP B;  3VY8 X;  3AAE B;  1GFQ A;  2R4O A;  3AA0 B;  1QJP A;  2YPV A;  1PRN A;  4RLC A;  4AKR A;  4LSF A;  5GTI O;  4N58 A;  3WU2 O;  2XMX A;  5B5E O;  3AA7 B;  2W81 C;  1S5L O;  1OPF A;  4PJ0 O;  4E1T A;  3C5O A;  4RLB A;  3VY9 X;  3LK3 B;  1T16 A;  3AA1 A;  4O3Z A;  4AUI A;  4C69 X;  2R8A A;  2M07 A;  1MM5 A;  3PF1 A;  1ZHZ A;  3DZM A;  2ERV A;  5T5F A;  3KVD D;  3VZT X;  3VE1 A;  1BH3 A;  4GCQ A;  2PRN A;  2WJQ A;  1GFM A;  1ORM A;  2XG6 A;  5DL5 A;  2XE1 A;  1BT9 A;  3BS0 A;  2X9K A;  3DWO X;  3NJT A;  4FZN A;  4UB6 O;  7PRN A;  2J4U P;  3UPG A;  4AZL A;  3DWN A;  3LK2 B;  5H2F O;  2FGR A;  3K19 A;  4RJW A;  1GFO A;  4FRX A;  3AA0 A;  5JDP A;  2WJR A;  4O3Y A;  4D65 A;  2KZ7 B;  2F1C X;  3PGS A;  2LFU A;  3AA7 A;  1HXX A;  4K3B A;  5EE2 A;  1ZHX A;  5ADX L;  2N2M A;  3AAA B;  1H6S 1;  5KAI O;  4AFK A;  2WVP A;  4FT6 A;  2MNH A;  2MHL A;  2F1V A;  4KR8 A;  3RBH A;  4D5U A;  4F4B A;  4C4V A;  3VZU X;  4QQ1 A;  1QJ9 A;  3HOL A;  2R89 A;  4PUX A;  2Y7S A;  5G39 A;  5G26 A;  1IZN B;  4RJX A;  2K4T A;  5GTH O;  2K0L A;  1MM4 A;  2J1N A;  3LK2 A;  3POU A;  4AKM A;  1THQ A;  3PGU A;  3DA3 A;  2POR A;  3BRZ A;  1YS5 A;  2OMF A;  4O3X B;  2JQY A;  3GP6 A;  3HOE A;  2AXT O;  2W80 C;  3PQS A;  3VE2 A;  2ZLD A;  1HXT A;  5DL8 A;  3A0B O;  3T0S A;  4N74 A;  2KXP A;  2IWV A;  3AAA A;  3AAE A;  4GF4 A;  4O4U A;  3T24 A;  1Q9F A;  2FGQ X;  4E1S A;  4Z3T A;  2KC0 A;  3LK4 1;  3SY9 A;  1ZHW A;  3AA6 B;  4JCH A;  1PHO A;  1HXU A;  3PRN A;  1P4T A;  4AYD C;  3BRY A;  5D5D A;  3A0H O;  3SYB A;  1E54 A;  2Y0K A;  4C00 A;  3LK3 A;  3POX A;  1T1L A; 
#chains in the Genus database with same CATH homology
 3HWB A;  1IZN A;  4O49 A;  4AKR B;  3EMN X;  1QJ8 A;  4LSH A;  3SY7 A;  2Y0L A;  4FZM A;  3V8U A;  5IYU A;  5AFU L;  4JFB A;  3SZD A;  2XE3 A;  2XTR A;  2JMM A;  4G76 A;  3POR A;  4GCS A;  6PRN A;  3T20 A;  3UAQ A;  4AYN A;  4O4X A;  4AYM C;  2XTQ A;  2N2L A;  4KRA A;  4GHB A;  3WI4 A;  1ZHY A;  4D64 A;  5FVN A;  4GCP A;  5PRN A;  4FRT A;  2ZFG A;  3AA6 A;  4B61 A;  2KZ7 A;  2Y2X A;  2XE5 A;  3O0E A;  3WI5 A;  5GV0 A;  1ZHT A;  5DL7 A;  5ADX K;  2ODJ A;  3LK4 2;  2YNK A;  4AYE C;  3TZG A;  1OSM A;  3POQ A;  5AFU K;  4LSE A;  4XNK A;  1GFP A;  3SZV A;  2X27 X;  3VZW X;  4XNL A;  4AYI D;  4FOZ A;  3HW9 A;  2QTK A;  4O3W A;  8PRN A;  5JDP A;  4FES A;  4FSO A;  4N59 A;  4G75 A;  1Q9G A;  3AA1 B;  3FYX A;  4FUV A;  4LSI A;  4RL9 A;  2Y0H A;  3NSG A;  4U9C A;  5DL6 A;  2LHF A;  3A2S X;  2XE2 A;  4KR4 A;  2F1T A;  4FMS A;  3G7G A;  3UU2 A;  4BUM X;  1BXW A;  3DA4 A;  3SYS A;  1G90 A;  3PQU A;  4FZL A;  1MPF A;  2KDY A;  3JTY A;  2GE4 A;  2O4V A;  2M06 A;  3QRA A;  4FSP A;  3QRC A;  1GFN A;  2KXP B;  3VY8 X;  3AAE B;  1GFQ A;  3AA0 B;  1QJP A;  2YPV A;  1PRN A;  4RLC A;  4AKR A;  4LSF A;  4N58 A;  2XMX A;  3AA7 B;  2W81 C;  1OPF A;  4E1T A;  3C5O A;  4RLB A;  3VY9 X;  3LK3 B;  3AA1 A;  4O3Z A;  4AUI A;  4C69 X;  2M07 A;  1MM5 A;  1ZHZ A;  5T5F A;  2ERV A;  3VZT X;  3KVD D;  3VE1 A;  1BH3 A;  4GCQ A;  2PRN A;  1GFM A;  1ORM A;  2XG6 A;  5DL5 A;  2XE1 A;  1BT9 A;  7PRN A;  4FZN A;  2J4U P;  3UPG A;  4AZL A;  3LK2 B;  2FGR A;  3K19 A;  4RJW A;  1GFO A;  4FRX A;  3AA0 A;  4O3Y A;  4D65 A;  2KZ7 B;  2LFU A;  3AA7 A;  1HXX A;  5EE2 A;  1ZHX A;  5ADX L;  2N2M A;  3AAA B;  1H6S 1;  4AFK A;  4FT6 A;  2MNH A;  2MHL A;  2F1V A;  4KR8 A;  3RBH A;  4D5U A;  4F4B A;  3VZU X;  4QQ1 A;  1QJ9 A;  3HOL A;  4PUX A;  2Y7S A;  5G26 A;  1IZN B;  4RJX A;  2K4T A;  2K0L A;  1MM4 A;  2J1N A;  3LK2 A;  3POU A;  4AKM A;  1THQ A;  3DA3 A;  2POR A;  1YS5 A;  2OMF A;  4O3X B;  3GP6 A;  3HOE A;  2W80 C;  3PQS A;  3VE2 A;  2ZLD A;  1HXT A;  5DL8 A;  3T0S A;  2KXP A;  3AAA A;  3AAE A;  4GF4 A;  4O4U A;  3T24 A;  1Q9F A;  2FGQ X;  4E1S A;  4Z3T A;  2KC0 A;  3LK4 1;  3SY9 A;  1ZHW A;  3AA6 B;  4JCH A;  1PHO A;  1HXU A;  3PRN A;  1P4T A;  4AYD C;  5D5D A;  3SYB A;  1E54 A;  2Y0K A;  3LK3 A;  3POX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...