5H1SO

Structure of the large subunit of the chloro-ribosome
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
134
structure length
134
Chain Sequence
LSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAASKMPIRTQFIISG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S rRNA
publication title Cryo-EM structure of the large subunit of the spinach chloroplast ribosome.
pubmed doi rcsb
total genus 19
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2016-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 5h1sO01
2QA4H 5HL7J 3CCVH 1KQSH 1Q7YJ 3CCJH 1M90J 1NJIJ 2QEXH 1Y69K 2OTLH 1VQ4H 5DM7J 5DM6J 4WCEJ 3CCUH 3CC2H 1VQKH 3PIOJ 1W2BH 2OTJH 5GADN 1VQ6H 3CC7H 1VQLH 4WF9J 3J7ZM 5JVHJ 3I55H 3I56H 5JVGJ 1JJ2H 5GAGN 4U67J 1VQMH 3CCQH 1VQ5H 1YJWH 1K73J 1K8AJ 3G4SH 1VQNH 1YJ9H 5GAHN 4IO9J 3CXCH 3G6EH 1YIJH 1VQ7H 4IOAJ 1QVGH 3CCMH 4WFNJ 3CCEH 4UY8M 2ZJPJ 5MLCO 1KC8J 3CD6H 1VQPH 2PA2A 4WFBJ 1YI2H 1QVFH 3CF5J 2ZJQJ 3DLLJ 1VQ8H 1YITH 5H1SO 1YHQH 1YJNH 1WKIA 1VQ9H 3G71H 3CMAH 5GAEN 1KD1J 5AN9F 1Q81J 2ZJRJ 3CCLH 3OW2H 3CCSH 1S72H 3CMEH 1M1KJ 4IOCJ 3CPWH 1K9MJ 3CC4H 3PIPJ 4WFAJ 1Q82J 1Q86J 1VQOH 1N8RJ 3CCRH
chains in the Genus database with same CATH superfamily
5AYZA 2QA4H 5HL7J 3CCVH 1KQSH 2J0FA 1DGJA 1Q7YJ 4GA5A 4US9A 3CCJH 1M90J 2W54B 4US8A 1NJIJ 3WNZA 2QEXH 1Y69K 3WO1A 3NVVC 3NRZC 2B7NA 2OTLH 5HULA 1VQ4H 1WYGA 5DM7J 5DM6J 4USAA 4WCEJ 3CCUH 4EADA 4EAFA 3CC2H 4C80A 3L4PA 1N5XA 1JROB 3ETRC 1VQKH 3AN1A 1OTPA 4GA4A 3C2FA 3PIOJ 1W2BH 2OMDA 2OTJH 5HUPA 1V97A 5GADN 1VQ6H 1QAPA 3CC7H 4YYYA 1VQLH 3L0GA 4WF9J 3J7ZM 5JVHJ 4ZOHA 2B7QA 3I55H 2W55B 3I56H 3TQVA 5JVGJ 1UOUA 1JJ2H 2I14A 2TPTA 1N63B 5GAGN 3NVYC 3VMMA 3SR6C 1RM6A 4U67J 1NVIE 1VQMH 3CCQH 4XR5A 1VQ5H 5AYYA 2W3RB 5HUOA 1YJWH 1QPNA 1N5WB 4C7ZA 1K73J 1AZYA 5MPOC 2Q5WE 1K8AJ 4LHMA 4GA6A 3EUB4 2JBMA 2QIEA 3AMZA 3G4SH 1VQNH 1YJ9H 5GAHN 4IO9J 3CXCH 4YEKA 1N60B 1X1OA 3C2OA 3G6EH 1YIJH 1VQ7H 1FM0E 1QVGH 4IOAJ 1YTEA 3CCMH 3C2RA 3PAJA 1VDVA 4WFNJ 3CCEH 4UY8M 2ZJPJ 5MLCO 1ZXIB 1SB3A 1KC8J 3CD6H 3FAHA 1FO4A 2E3TA 3FC4A 1VQPH 2I1OA 2PA2A 2WP4A 3C2VA 5EP8A 1QPOA 3RPFA 1N61B 4X46A 1QPQA 1FMAE 4WFBJ 1YI2H 1QVFH 3CF5J 2ZJQJ 3BIIE 2WK6A 4AP8A 3DLLJ 1VQ8H 1YITH 1O4UA 2W3SB 5EY3A 5H1SO 1YHQH 1YJNH 3NVWC 1WKIA 1VQ9H 3G71H 3CMAH 5GAEN 1KD1J 5AN9F 4KWWA 1Q81J 2ZJRJ 5AYXA 3CCLH 1YTKA 3CCSH 1NVJA 1FFUB 3B9JC 3CCRH 1QPRA 3OW2H 1S72H 3CMEH 3C2EA 2DSJA 1M1KJ 2WK5A 4IOCJ 1FIQC 4I9AA 3CPWH 1N62B 2B7PA 4KWVA 3GNNA 1SIJA 3NVZC 3WO0A 3CC4H 1K9MJ 1VLBA 1BRWA 3NS1C 3PIPJ 1FFVB 3AM9A 4WFAJ 1Q82J 1Q86J 1VQOH 1YTDA 1N8RJ 4C7YA 1JRPB 3H5QA
chains in the Genus database with same CATH topology
2QA4H 5HL7J 3CCVH 1KQSH 1Q7YJ 3CCJH 1M90J 1NJIJ 2QEXH 1Y69K 2OTLH 1VQ4H 5DM7J 5DM6J 4WCEJ 3CCUH 3CC2H 1VQKH 3PIOJ 1W2BH 2OTJH 5GADN 1VQ6H 3CC7H 1VQLH 4WF9J 3J7ZM 5JVHJ 3I55H 3I56H 5JVGJ 1JJ2H 5GAGN 4U67J 1VQMH 3CCQH 1VQ5H 1YJWH 1K73J 1K8AJ 3G4SH 1VQNH 1YJ9H 5GAHN 4IO9J 3CXCH 3G6EH 1YIJH 1VQ7H 4IOAJ 1QVGH 3CCMH 4WFNJ 3CCEH 4UY8M 2ZJPJ 5MLCO 1KC8J 3CD6H 1VQPH 2PA2A 4WFBJ 1YI2H 1QVFH 3CF5J 2ZJQJ 3DLLJ 1VQ8H 1YITH 5H1SO 1YHQH 1YJNH 1WKIA 1VQ9H 3G71H 3CMAH 5GAEN 1KD1J 5AN9F 1Q81J 2ZJRJ 3CCLH 3OW2H 3CCSH 1S72H 3CMEH 1M1KJ 4IOCJ 3CPWH 1K9MJ 3CC4H 3PIPJ 4WFAJ 1Q82J 1Q86J 1VQOH 1N8RJ 3CCRH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QA4 H;  5HL7 J;  3CCV H;  1KQS H;  1Q7Y J;  3CCJ H;  1M90 J;  1NJI J;  2QEX H;  1Y69 K;  2OTL H;  1VQ4 H;  5DM7 J;  5DM6 J;  4WCE J;  3CCU H;  3CC2 H;  1VQK H;  3PIO J;  1W2B H;  2OTJ H;  5GAD N;  1VQ6 H;  3CC7 H;  1VQL H;  4WF9 J;  3J7Z M;  5JVH J;  3I55 H;  3I56 H;  5JVG J;  1JJ2 H;  5GAG N;  4U67 J;  1VQM H;  3CCQ H;  1VQ5 H;  1YJW H;  1K73 J;  1K8A J;  3G4S H;  1VQN H;  1YJ9 H;  5GAH N;  4IO9 J;  3CXC H;  3G6E H;  1YIJ H;  1VQ7 H;  4IOA J;  1QVG H;  3CCM H;  4WFN J;  3CCE H;  4UY8 M;  2ZJP J;  5MLC O;  1KC8 J;  3CD6 H;  1VQP H;  2PA2 A;  4WFB J;  1YI2 H;  1QVF H;  3CF5 J;  2ZJQ J;  3DLL J;  1VQ8 H;  1YIT H;  5H1S O;  1YHQ H;  1YJN H;  1WKI A;  1VQ9 H;  3G71 H;  3CMA H;  5GAE N;  1KD1 J;  5AN9 F;  1Q81 J;  2ZJR J;  3CCL H;  3OW2 H;  3CCS H;  1S72 H;  3CME H;  1M1K J;  4IOC J;  3CPW H;  1K9M J;  3CC4 H;  3PIP J;  4WFA J;  1Q82 J;  1Q86 J;  1VQO H;  1N8R J;  3CCR H; 
#chains in the Genus database with same CATH topology
 5AYZ A;  2QA4 H;  5HL7 J;  3CCV H;  1KQS H;  2J0F A;  1DGJ A;  1Q7Y J;  4GA5 A;  4US9 A;  3CCJ H;  1M90 J;  2W54 B;  4US8 A;  1NJI J;  3WNZ A;  2QEX H;  1Y69 K;  3WO1 A;  3NVV C;  3NRZ C;  2B7N A;  2OTL H;  5HUL A;  1VQ4 H;  1WYG A;  5DM7 J;  5DM6 J;  4USA A;  4WCE J;  3CCU H;  4EAD A;  4EAF A;  3CC2 H;  4C80 A;  3L4P A;  1N5X A;  1JRO B;  3ETR C;  1VQK H;  3AN1 A;  1OTP A;  4GA4 A;  3C2F A;  3PIO J;  1W2B H;  2OMD A;  2OTJ H;  5HUP A;  1V97 A;  5GAD N;  1VQ6 H;  1QAP A;  3CC7 H;  4YYY A;  1VQL H;  3L0G A;  4WF9 J;  3J7Z M;  5JVH J;  4ZOH A;  2B7Q A;  3I55 H;  2W55 B;  3I56 H;  3TQV A;  5JVG J;  1UOU A;  1JJ2 H;  2I14 A;  2TPT A;  1N63 B;  5GAG N;  3NVY C;  3VMM A;  3SR6 C;  1RM6 A;  4U67 J;  1NVI E;  1VQM H;  3CCQ H;  4XR5 A;  1VQ5 H;  5AYY A;  2W3R B;  5HUO A;  1YJW H;  1QPN A;  1N5W B;  4C7Z A;  1K73 J;  1AZY A;  5MPO C;  2Q5W E;  1K8A J;  4LHM A;  4GA6 A;  3EUB 4;  2JBM A;  2QIE A;  3AMZ A;  3G4S H;  1VQN H;  1YJ9 H;  5GAH N;  4IO9 J;  3CXC H;  4YEK A;  1N60 B;  1X1O A;  3C2O A;  3G6E H;  1YIJ H;  1VQ7 H;  1FM0 E;  1QVG H;  4IOA J;  1YTE A;  3CCM H;  3C2R A;  3PAJ A;  1VDV A;  4WFN J;  3CCE H;  4UY8 M;  2ZJP J;  5MLC O;  1ZXI B;  1SB3 A;  1KC8 J;  3CD6 H;  3FAH A;  1FO4 A;  2E3T A;  3FC4 A;  1VQP H;  2I1O A;  2PA2 A;  2WP4 A;  3C2V A;  5EP8 A;  1QPO A;  3RPF A;  1N61 B;  4X46 A;  1QPQ A;  1FMA E;  4WFB J;  1YI2 H;  1QVF H;  3CF5 J;  2ZJQ J;  3BII E;  2WK6 A;  4AP8 A;  3DLL J;  1VQ8 H;  1YIT H;  1O4U A;  2W3S B;  5EY3 A;  5H1S O;  1YHQ H;  1YJN H;  3NVW C;  1WKI A;  1VQ9 H;  3G71 H;  3CMA H;  5GAE N;  1KD1 J;  5AN9 F;  4KWW A;  1Q81 J;  2ZJR J;  5AYX A;  3CCL H;  1YTK A;  3CCS H;  1NVJ A;  1FFU B;  3B9J C;  3CCR H;  1QPR A;  3OW2 H;  1S72 H;  3CME H;  3C2E A;  2DSJ A;  1M1K J;  2WK5 A;  4IOC J;  1FIQ C;  4I9A A;  3CPW H;  1N62 B;  2B7P A;  4KWV A;  3GNN A;  1SIJ A;  3NVZ C;  3WO0 A;  3CC4 H;  1K9M J;  1VLB A;  1BRW A;  3NS1 C;  3PIP J;  1FFV B;  3AM9 A;  4WFA J;  1Q82 J;  1Q86 J;  1VQO H;  1YTD A;  1N8R J;  4C7Y A;  1JRP B;  3H5Q A; 
#chains in the Genus database with same CATH homology
 2QA4 H;  5HL7 J;  3CCV H;  1KQS H;  1Q7Y J;  3CCJ H;  1M90 J;  1NJI J;  2QEX H;  1Y69 K;  2OTL H;  1VQ4 H;  5DM7 J;  5DM6 J;  4WCE J;  3CCU H;  3CC2 H;  1VQK H;  3PIO J;  1W2B H;  2OTJ H;  5GAD N;  1VQ6 H;  3CC7 H;  1VQL H;  4WF9 J;  3J7Z M;  5JVH J;  3I55 H;  3I56 H;  5JVG J;  1JJ2 H;  5GAG N;  4U67 J;  1VQM H;  3CCQ H;  1VQ5 H;  1YJW H;  1K73 J;  1K8A J;  3G4S H;  1VQN H;  1YJ9 H;  5GAH N;  4IO9 J;  3CXC H;  3G6E H;  1YIJ H;  1VQ7 H;  4IOA J;  1QVG H;  3CCM H;  4WFN J;  3CCE H;  4UY8 M;  2ZJP J;  5MLC O;  1KC8 J;  3CD6 H;  1VQP H;  2PA2 A;  4WFB J;  1YI2 H;  1QVF H;  3CF5 J;  2ZJQ J;  3DLL J;  1VQ8 H;  1YIT H;  5H1S O;  1YHQ H;  1YJN H;  1WKI A;  1VQ9 H;  3G71 H;  3CMA H;  5GAE N;  1KD1 J;  5AN9 F;  1Q81 J;  2ZJR J;  3CCL H;  3OW2 H;  3CCS H;  1S72 H;  3CME H;  1M1K J;  4IOC J;  3CPW H;  1K9M J;  3CC4 H;  3PIP J;  4WFA J;  1Q82 J;  1Q86 J;  1VQO H;  1N8R J;  3CCR H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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