5H1SP

Structure of the large subunit of the chloro-ribosome
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
116
structure length
116
Chain Sequence
MKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S rRNA
publication title Cryo-EM structure of the large subunit of the spinach chloroplast ribosome.
pubmed doi rcsb
total genus 29
structure length 116
sequence length 116
ec nomenclature
pdb deposition date 2016-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF01196 Ribosomal_L17 Ribosomal protein L17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 5h1sP00
4IO9K 4WFAK 3PIPK 5DM6K 2ZJQK 1GD8A 5GAHO 4WFNK 5GAGO 3DLLK 3PIOK 5JVGK 4UY8N 2ZJRK 5DM7K 5H1SP 3CF5K 4WFBK 5HL7K 4IOCK 5GADO 5MLCP 4WCEK 4IOAK 4WF9K 3J7ZN 5JVHK 2ZJPK 4U67K 5GAEO 2CQMA
chains in the Genus database with same CATH superfamily
4IO9K 4WFAK 3PIPK 5DM6K 2ZJQK 1GD8A 5GAHO 4WFNK 5GAGO 3DLLK 3PIOK 5JVGK 4UY8N 2ZJRK 5DM7K 5H1SP 3CF5K 4WFBK 5HL7K 4IOCK 5GADO 5MLCP 4WCEK 4IOAK 4WF9K 3J7ZN 5JVHK 2ZJPK 4U67K 5GAEO 2CQMA
chains in the Genus database with same CATH topology
4IO9K 4WFAK 3PIPK 5DM6K 2ZJQK 1GD8A 5GAHO 4WFNK 5GAGO 3DLLK 3PIOK 5JVGK 4UY8N 2ZJRK 5DM7K 5H1SP 3CF5K 4WFBK 5HL7K 4IOCK 5GADO 5MLCP 4WCEK 4IOAK 4WF9K 3J7ZN 5JVHK 2ZJPK 4U67K 5GAEO 2CQMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IO9 K;  4WFA K;  3PIP K;  5DM6 K;  2ZJQ K;  1GD8 A;  5GAH O;  4WFN K;  5GAG O;  3DLL K;  3PIO K;  5JVG K;  4UY8 N;  2ZJR K;  5DM7 K;  5H1S P;  3CF5 K;  4WFB K;  5HL7 K;  4IOC K;  5GAD O;  5MLC P;  4WCE K;  4IOA K;  4WF9 K;  3J7Z N;  5JVH K;  2ZJP K;  4U67 K;  5GAE O;  2CQM A; 
#chains in the Genus database with same CATH topology
 4IO9 K;  4WFA K;  3PIP K;  5DM6 K;  2ZJQ K;  1GD8 A;  5GAH O;  4WFN K;  5GAG O;  3DLL K;  3PIO K;  5JVG K;  4UY8 N;  2ZJR K;  5DM7 K;  5H1S P;  3CF5 K;  4WFB K;  5HL7 K;  4IOC K;  5GAD O;  5MLC P;  4WCE K;  4IOA K;  4WF9 K;  3J7Z N;  5JVH K;  2ZJP K;  4U67 K;  5GAE O;  2CQM A; 
#chains in the Genus database with same CATH homology
 4IO9 K;  4WFA K;  3PIP K;  5DM6 K;  2ZJQ K;  1GD8 A;  5GAH O;  4WFN K;  5GAG O;  3DLL K;  3PIO K;  5JVG K;  4UY8 N;  2ZJR K;  5DM7 K;  5H1S P;  3CF5 K;  4WFB K;  5HL7 K;  4IOC K;  5GAD O;  5MLC P;  4WCE K;  4IOA K;  4WF9 K;  3J7Z N;  5JVH K;  2ZJP K;  4U67 K;  5GAE O;  2CQM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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