5H2FO

Crystal structure of the psbm-deletion mutant of photosystem ii
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
243
structure length
243
Chain Sequence
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords Photosystem II protein D1 1
publication title Mutual relationships between structural and functional changes in a PsbM-deletion mutant of photosystem II.
pubmed doi rcsb
total genus 52
structure length 243
sequence length 243
chains with identical sequence o
ec nomenclature
pdb deposition date 2016-10-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5h2fO01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 5h2fO02
3WU2O 5GTIO 5KAFO 4UB6O 3KZIO 3A0BO 1S5LO 3A0HO 5E79O 5G38A 5GTHO 4UB8O 5G39A 5B66O 5KAIO 4IL6O 4PJ0O 5G3AA 5TISO 5B5EO 3JCUO 5H2FO 2AXTO
chains in the Genus database with same CATH superfamily
3LK41 3VY9X 3WU2O 2O4VA 2KZ7B 2MHLA 3LK42 4G76A 4LSIA 4AFKA 2J4UP 3O0EA 3AA1A 3HOEA 4C00A 3UAQA 4O4UA 4QQ1A 3VZUX 4XNLA 4G75A 1BXWA 1S5LO 4F4BA 4N74A 4AKRB 5PRNA 1MM5A 4FSPA 2WJQA 2KXPA 5KAIO 4K3CA 3SY7A 3NJTA 3AAAA 3KVDD 4JCHA 3QRCA 5DL7A 2Y0HA 3TZGA 1YS5A 5DL6A 4O3WA 5D5DA 2IWVA 3AA7B 3PGRA 4FRXA 4XNKA 3FYXA 1BT9A 4FZMA 5EE2A 2R88A 3HW9A 3SYBA 1H6S1 5G3AA 4O4XA 4C4VB 5AFUK 2XE5A 1THQA 5B5EO 2KC0A 2K0LA 2W81C 4RLCA 3RBHA 5H2FO 1G90A 4RJWA 2R4NA 2LFUA 3VZWX 3LK3A 3BRZA 3WI4A 2Y2XA 4JFBA 2IWWA 3QRAA 4AUIA 1ZHZA 5KAFO 7PRNA 1HXXA 2LHFA 5ADXL 2Y0LA 4PUXA 5T5FA 3A0BO 4GHBA 3T20A 1P4TA 3G7GA 1PRNA 2GE4A 1GFPA 1IZNA 3A0HO 3AA1B 1T1LA 5ADXK 1GFOA 1MM4A 2F1VA 4KR8A 4N59A 4B61A 5GTHO 1ZHXA 4RLBA 4GF4A 2W80C 4D5UA 3PQUA 4K3BA 1GFQA 2MNHA 2J1NA 3LK2A 2KDYA 3PF1A 4AYEC 3HOLA 3SZDA 1OSMA 4C69X 2XE2A 2KXPB 2X9KA 2XE3A 3A2SX 3AA0A 2R8AA 1GFMA 3PRNA 4FQEA 4U9CA 3AAAB 4E1SA 4D64A 4LSEA 3T24A 4BUMX 1T16A 4KRAA 2F1CX 5TISO 4FZLA 1BH3A 4O49A 1OPFA 3JCUO 4FSOA 4D65A 2WVPA 4E1TA 4AYNA 1HXTA 2Y7SA 4FZNA 3DWNA 4GCSA 5DL8A 5GTIO 2K4TA 3V8UA 4UB6O 3KZIO 3VZTX 3LK3B 4AYID 2ERVA 3UU2A 1E54A 3BRYA 3EMNX 5FVNA 1QJPA 3DA3A 2JMMA 5E79O 4RL9A 4N75A 2XTRA 3POQA 4O3XB 5B66O 3POUA 5GV0A 3DWOX 1IZNB 2JQYA 3JTYA 4AYDC 2XG6A 3AAEA 5DL5A 2OMFA 2FGRA 2XE1A 3DA4A 1MPFA 2M06A 4FMSA 4O3YA 3PGSA 3C5OA 4PR7A 2FGQX 1ZHYA 4N58A 4PJ0O 3LK2B 3VE2A 2R89A 3PORA 1GFNA 4RJXA 3SZVA 3AA0B 3SY9A 1ZHWA 1HXUA 2ZFGA 4FRTA 2WJRA 1Q9FA 2R4LA 4FOZA 4O3ZA 2N2LA 2R4OA 2R4PA 2XTQA 3DZMA 4AKRA 3POXA 4FT6A 3T0SA 2PORA 2YNKA 4GCQA 3BS0A 1Q9GA 3NSGA 3PGUA 1QJ8A 4FESA 2ODJA 5G38A 2QTKA 4UB8O 3VE1A 2Y0KA 4FUVA 5G39A 6PRNA 2X27X 3HWBA 5AFUL 3AA7A 3PQSA 3K19A 5G26A 3WI5A 3AA6A 4GCPA 3UPGA 3GP6A 4C4VA 5IYUA 4AZLA 2XMXA 3SYSA 1ZHTA 3AA6B 4IL6O 2ZLDA 4LSHA 4AYMC 5JDPA 3AAEB 2N2MA 2YPVA 3VY8X 2PRNA 1PHOA 4AKMA 2M07A 1QJ9A 4Z3TA 4LSFA 4CTDA 2KZ7A 4KR4A 2AXTO 8PRNA 2F1TA 1ORMA
chains in the Genus database with same CATH topology
3WU2O 5GTIO 5KAFO 4UB6O 3KZIO 3A0BO 1S5LO 3A0HO 5E79O 5G38A 5GTHO 4UB8O 5G39A 5B66O 5KAIO 4IL6O 4PJ0O 5G3AA 5TISO 5B5EO 3JCUO 5H2FO 2AXTO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WU2 O;  5GTI O;  5KAF O;  4UB6 O;  3KZI O;  3A0B O;  1S5L O;  3A0H O;  5E79 O;  5G38 A;  5GTH O;  4UB8 O;  5G39 A;  5B66 O;  5KAI O;  4IL6 O;  4PJ0 O;  5G3A A;  5TIS O;  5B5E O;  3JCU O;  5H2F O;  2AXT O; 
#chains in the Genus database with same CATH topology
 3LK4 1;  3VY9 X;  3WU2 O;  2O4V A;  2KZ7 B;  2MHL A;  3LK4 2;  4G76 A;  4LSI A;  4AFK A;  2J4U P;  3O0E A;  3AA1 A;  3HOE A;  4C00 A;  3UAQ A;  4O4U A;  4QQ1 A;  3VZU X;  4XNL A;  4G75 A;  1BXW A;  1S5L O;  4F4B A;  4N74 A;  4AKR B;  5PRN A;  1MM5 A;  4FSP A;  2WJQ A;  2KXP A;  5KAI O;  4K3C A;  3SY7 A;  3NJT A;  3AAA A;  3KVD D;  4JCH A;  3QRC A;  5DL7 A;  2Y0H A;  3TZG A;  1YS5 A;  5DL6 A;  4O3W A;  5D5D A;  2IWV A;  3AA7 B;  3PGR A;  4FRX A;  4XNK A;  3FYX A;  1BT9 A;  4FZM A;  5EE2 A;  2R88 A;  3HW9 A;  3SYB A;  1H6S 1;  5G3A A;  4O4X A;  4C4V B;  5AFU K;  2XE5 A;  1THQ A;  5B5E O;  2KC0 A;  2K0L A;  2W81 C;  4RLC A;  3RBH A;  5H2F O;  1G90 A;  4RJW A;  2R4N A;  2LFU A;  3VZW X;  3LK3 A;  3BRZ A;  3WI4 A;  2Y2X A;  4JFB A;  2IWW A;  3QRA A;  4AUI A;  1ZHZ A;  5KAF O;  7PRN A;  1HXX A;  2LHF A;  5ADX L;  2Y0L A;  4PUX A;  5T5F A;  3A0B O;  4GHB A;  3T20 A;  1P4T A;  3G7G A;  1PRN A;  2GE4 A;  1GFP A;  1IZN A;  3A0H O;  3AA1 B;  1T1L A;  5ADX K;  1GFO A;  1MM4 A;  2F1V A;  4KR8 A;  4N59 A;  4B61 A;  5GTH O;  1ZHX A;  4RLB A;  4GF4 A;  2W80 C;  4D5U A;  3PQU A;  4K3B A;  1GFQ A;  2MNH A;  2J1N A;  3LK2 A;  2KDY A;  3PF1 A;  4AYE C;  3HOL A;  3SZD A;  1OSM A;  4C69 X;  2XE2 A;  2KXP B;  2X9K A;  2XE3 A;  3A2S X;  3AA0 A;  2R8A A;  1GFM A;  3PRN A;  4FQE A;  4U9C A;  3AAA B;  4E1S A;  4D64 A;  4LSE A;  3T24 A;  4BUM X;  1T16 A;  4KRA A;  2F1C X;  5TIS O;  4FZL A;  1BH3 A;  4O49 A;  1OPF A;  3JCU O;  4FSO A;  4D65 A;  2WVP A;  4E1T A;  4AYN A;  1HXT A;  2Y7S A;  4FZN A;  3DWN A;  4GCS A;  5DL8 A;  5GTI O;  2K4T A;  3V8U A;  4UB6 O;  3KZI O;  3VZT X;  3LK3 B;  4AYI D;  2ERV A;  3UU2 A;  1E54 A;  3BRY A;  3EMN X;  5FVN A;  1QJP A;  3DA3 A;  2JMM A;  5E79 O;  4RL9 A;  4N75 A;  2XTR A;  3POQ A;  4O3X B;  5B66 O;  3POU A;  5GV0 A;  3DWO X;  1IZN B;  2JQY A;  3JTY A;  4AYD C;  2XG6 A;  3AAE A;  5DL5 A;  2OMF A;  2FGR A;  2XE1 A;  3DA4 A;  1MPF A;  2M06 A;  4FMS A;  4O3Y A;  3PGS A;  3C5O A;  4PR7 A;  2FGQ X;  1ZHY A;  4N58 A;  4PJ0 O;  3LK2 B;  3VE2 A;  2R89 A;  3POR A;  1GFN A;  4RJX A;  3SZV A;  3AA0 B;  3SY9 A;  1ZHW A;  1HXU A;  2ZFG A;  4FRT A;  2WJR A;  1Q9F A;  2R4L A;  4FOZ A;  4O3Z A;  2N2L A;  2R4O A;  2R4P A;  2XTQ A;  3DZM A;  4AKR A;  3POX A;  4FT6 A;  3T0S A;  2POR A;  2YNK A;  4GCQ A;  3BS0 A;  1Q9G A;  3NSG A;  3PGU A;  1QJ8 A;  4FES A;  2ODJ A;  5G38 A;  2QTK A;  4UB8 O;  3VE1 A;  2Y0K A;  4FUV A;  5G39 A;  6PRN A;  2X27 X;  3HWB A;  5AFU L;  3AA7 A;  3PQS A;  3K19 A;  5G26 A;  3WI5 A;  3AA6 A;  4GCP A;  3UPG A;  3GP6 A;  4C4V A;  5IYU A;  4AZL A;  2XMX A;  3SYS A;  1ZHT A;  3AA6 B;  4IL6 O;  2ZLD A;  4LSH A;  4AYM C;  5JDP A;  3AAE B;  2N2M A;  2YPV A;  3VY8 X;  2PRN A;  1PHO A;  4AKM A;  2M07 A;  1QJ9 A;  4Z3T A;  4LSF A;  4CTD A;  2KZ7 A;  4KR4 A;  2AXT O;  8PRN A;  2F1T A;  1ORM A; 
#chains in the Genus database with same CATH homology
 3WU2 O;  5GTI O;  5KAF O;  4UB6 O;  3KZI O;  3A0B O;  1S5L O;  3A0H O;  5E79 O;  5G38 A;  5GTH O;  4UB8 O;  5G39 A;  5B66 O;  5KAI O;  4IL6 O;  4PJ0 O;  5G3A A;  5TIS O;  5B5E O;  3JCU O;  5H2F O;  2AXT O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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