5HA4A

Structure of a diaminopimelate epimerase from acinetobacter baumannii
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
280
structure length
280
Chain Sequence
b'MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLPNEIPFVAEEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLTADVAGIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLRYFQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Diaminopimelate epimerase
publication title Structure of a diaminopimelate epimerase from Acinetobacter baumannii
rcsb
source organism Acinetobacter baumannii (strain ab307-0294)
molecule tags Isomerase
total genus 81
structure length 280
sequence length 280
chains with identical sequence B
ec nomenclature ec 5.1.1.7: Diaminopimelate epimerase.
pdb deposition date 2015-12-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01678 DAP_epimerase Diaminopimelate epimerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 5ha4A02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 5ha4A01
1S7JA 1U0KA 5IWEA 1W61A 2GKJA 1TM0A 1XUBA 4DUNA 1QY9A 1U1WA 1GQZA 5M47A 2OTNA 2GKEA 4K7GB 1W62A 3G7KA 4IK0A 2H9FA 3EKMA 1BWZA 4LB0A 4JUUA 4Q2HA 5H2GA 4Q60A 4IJZA 3FVEA 4K7XA 2Q9HA 4JCIA 1U1XA 2PW0A 2Q9JA 3EJXA 4K8LA 5H2YA 5HA4A 3EDNA 4JBDA 1QYAA 1T6KA 2PVZA 1YM5A 4JD7A 4J9WA 1SDJA 4J9XA 2AZPA 1U1VA 1XUAA
chains in the Genus database with same CATH superfamily
4GL6A 3WQZA 2GKJA 1TM0A 4DUNA 2OTNA 1I74A 3G7KA 3PW9A 1BWZA 2QB7A 4Q60A 4IJZA 4RPAA 4JCIA 1U1XA 2Q9JA 2ZVFA 3ICJA 5H2YA 3DEVA 3EDNA 5ANPA 1YM5A 2LT2A 2AZPA 1GQZA 4LS9A 4LG3A 4K7GB 1W62A 4IK0A 4LB0A 3FVEA 2Q9HA 3EJXA 1WPMA 4JBDA 1T6KA 2PVZA 2IW4A 4J9WA 1U1VA 5IWEA 1XUBA 2KW7A 3PVHA 1U1WA 2MPBA 2ZXRA 1K23A 2ZXPA 4JUUA 4PY9A 4K7XA 2PW0A 4K8LA 2HAWA 3W5WA 1K20A 3IGHX 5HA4A 3G98A 4J9XA 1XUAA 1IR6A 1S7JA 1U0KA 1W61A 1QY9A 2ENXA 2GKEA 2YMAA 2ZXOA 2KPTA 4OA3A 2H9FA 3EKMA 4Q2HA 5H2GA 2QB8A 2QB6A 1QYAA 2EB0A 4JD7A 1SDJA 3PTJA 1WPPA 5M47A
chains in the Genus database with same CATH topology
4GL6A 3WQZA 2GKJA 1TM0A 4DUNA 2OTNA 1I74A 3G7KA 3PW9A 1BWZA 2QB7A 4Q60A 4IJZA 4RPAA 4JCIA 1U1XA 2Q9JA 2ZVFA 3ICJA 5H2YA 3DEVA 3EDNA 5ANPA 1YM5A 2LT2A 2AZPA 1GQZA 4LS9A 4LG3A 4K7GB 1W62A 4IK0A 4LB0A 3FVEA 2Q9HA 3EJXA 1WPMA 4JBDA 1T6KA 2PVZA 2IW4A 4J9WA 1U1VA 5IWEA 1XUBA 2KW7A 3PVHA 1U1WA 2MPBA 2ZXRA 1K23A 2ZXPA 4JUUA 4PY9A 4K7XA 2PW0A 4K8LA 2HAWA 3W5WA 1K20A 3IGHX 5HA4A 3G98A 4J9XA 1XUAA 1IR6A 1S7JA 1U0KA 1W61A 1QY9A 2ENXA 2GKEA 2YMAA 2ZXOA 2KPTA 4OA3A 2H9FA 3EKMA 4Q2HA 5H2GA 2QB8A 2QB6A 1QYAA 2EB0A 4JD7A 1SDJA 3PTJA 1WPPA 5M47A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S7J A;  1U0K A;  5IWE A;  1W61 A;  2GKJ A;  1TM0 A;  1XUB A;  4DUN A;  1QY9 A;  1U1W A;  1GQZ A;  5M47 A;  2OTN A;  2GKE A;  4K7G B;  1W62 A;  3G7K A;  4IK0 A;  2H9F A;  3EKM A;  1BWZ A;  4LB0 A;  4JUU A;  4Q2H A;  5H2G A;  4Q60 A;  4IJZ A;  3FVE A;  4K7X A;  2Q9H A;  4JCI A;  1U1X A;  2PW0 A;  2Q9J A;  3EJX A;  4K8L A;  5H2Y A;  5HA4 A;  3EDN A;  4JBD A;  1QYA A;  1T6K A;  2PVZ A;  1YM5 A;  4JD7 A;  4J9W A;  1SDJ A;  4J9X A;  2AZP A;  1U1V A;  1XUA A; 
#chains in the Genus database with same CATH topology
 4GL6 A;  3WQZ A;  2GKJ A;  1TM0 A;  4DUN A;  2OTN A;  1I74 A;  3G7K A;  3PW9 A;  1BWZ A;  2QB7 A;  4Q60 A;  4IJZ A;  4RPA A;  4JCI A;  1U1X A;  2Q9J A;  2ZVF A;  3ICJ A;  5H2Y A;  3DEV A;  3EDN A;  5ANP A;  1YM5 A;  2LT2 A;  2AZP A;  1GQZ A;  4LS9 A;  4LG3 A;  4K7G B;  1W62 A;  4IK0 A;  4LB0 A;  3FVE A;  2Q9H A;  3EJX A;  1WPM A;  4JBD A;  1T6K A;  2PVZ A;  2IW4 A;  4J9W A;  1U1V A;  5IWE A;  1XUB A;  2KW7 A;  3PVH A;  1U1W A;  2MPB A;  2ZXR A;  1K23 A;  2ZXP A;  4JUU A;  4PY9 A;  4K7X A;  2PW0 A;  4K8L A;  2HAW A;  3W5W A;  1K20 A;  3IGH X;  5HA4 A;  3G98 A;  4J9X A;  1XUA A;  1IR6 A;  1S7J A;  1U0K A;  1W61 A;  1QY9 A;  2ENX A;  2GKE A;  2YMA A;  2ZXO A;  2KPT A;  4OA3 A;  2H9F A;  3EKM A;  4Q2H A;  5H2G A;  2QB8 A;  2QB6 A;  1QYA A;  2EB0 A;  4JD7 A;  1SDJ A;  3PTJ A;  1WPP A;  5M47 A; 
#chains in the Genus database with same CATH homology
 4GL6 A;  3WQZ A;  2GKJ A;  1TM0 A;  4DUN A;  2OTN A;  1I74 A;  3G7K A;  3PW9 A;  1BWZ A;  2QB7 A;  4Q60 A;  4IJZ A;  4RPA A;  4JCI A;  1U1X A;  2Q9J A;  2ZVF A;  3ICJ A;  5H2Y A;  3DEV A;  3EDN A;  5ANP A;  1YM5 A;  2LT2 A;  2AZP A;  1GQZ A;  4LS9 A;  4LG3 A;  4K7G B;  1W62 A;  4IK0 A;  4LB0 A;  3FVE A;  2Q9H A;  3EJX A;  1WPM A;  4JBD A;  1T6K A;  2PVZ A;  2IW4 A;  4J9W A;  1U1V A;  5IWE A;  1XUB A;  2KW7 A;  3PVH A;  1U1W A;  2MPB A;  2ZXR A;  1K23 A;  2ZXP A;  4JUU A;  4PY9 A;  4K7X A;  2PW0 A;  4K8L A;  2HAW A;  3W5W A;  1K20 A;  3IGH X;  5HA4 A;  3G98 A;  4J9X A;  1XUA A;  1IR6 A;  1S7J A;  1U0K A;  1W61 A;  1QY9 A;  2ENX A;  2GKE A;  2YMA A;  2ZXO A;  2KPT A;  4OA3 A;  2H9F A;  3EKM A;  4Q2H A;  5H2G A;  2QB8 A;  2QB6 A;  1QYA A;  2EB0 A;  4JD7 A;  1SDJ A;  3PTJ A;  1WPP A;  5M47 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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