5HBQA

C63d mutant of the rhodanese domain of ygap
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
103
structure length
103
Chain Sequence
TTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQIIFHDQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLPVAVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Inner membrane protein YgaP
publication title S-Nitrosylation Induces Structural and Dynamical Changes in a Rhodanese Family Protein.
pubmed doi rcsb
source organism Escherichia coli
total genus 35
structure length 103
sequence length 103
ec nomenclature
pdb deposition date 2016-01-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 5hbqA00
3AAYA 2FSXA 1BOIA 1DP2A 2VSWA 3NTAA 2A2KA 2GWFA 1VEEA 3P3AA 3FS5A 5HBQA 2WLRA 1RHDA 5HBPA 2JTSA 4WH7A 5LAOA 2MOIA 2DCQA 2J6PA 3IPOA 1H4KX 1HZMA 2KL3A 3R2UA 1UARA 3I2VA 3TG1B 3TP9A 3NHVA 3AAXA 3NT6A 2EG3A 3I3UA 1TQ1A 5HBOA 3OP3A 3HWIA 3ICRA 2MOLA 5LAMA 1CWSA 1YMKA 1E0CA 1YT8A 3IWHA 1QB0A 2EG4B 5HBLA 3HIXA 1CWTA 4WH9A 1RHSA 3F4AA 1YMDA 1C25A 1URHA 3FOJA 1CWRA 1T3KA 3FLHA 2IFDA 2JTRA 3G5JA 3ICTA 1WV9A 3HZUA 1WHBA 2WLXA 2IFVA 2MRMA 2K0ZA 2EG4A 3TG3A 3NTDA 1BOHA 3FNJA 2OUCA 1QXNA 3K9RA 3ILMA 1YM9A 3GK5A 3MZZA 4OCGA 2ORAA 3OLHA 1YS0A 3IPPA 1H4MX 4JGTA 3ICSA 2HHGA 3O3WA 2UZQA 1GN0A 2JTQA 1ORBA 1YMLA 3UTNX 1GMXA 4F67A 5HPAA 3D1PA 1OKGA
chains in the Genus database with same CATH superfamily
3AAYA 2FSXA 1BOIA 1DP2A 2VSWA 3NTAA 2A2KA 2GWFA 1VEEA 3P3AA 3FS5A 5HBQA 2WLRA 1RHDA 5HBPA 2JTSA 4WH7A 5LAOA 2MOIA 2DCQA 2J6PA 3IPOA 1H4KX 1HZMA 2KL3A 3R2UA 1UARA 3I2VA 2Q82A 3TG1B 3TP9A 3NHVA 3AAXA 3NT6A 2EG3A 3I3UA 1TQ1A 5HBOA 3OP3A 3HWIA 3ICRA 2MOLA 5LAMA 1CWSA 1YMKA 1E0CA 1YT8A 3IWHA 1QB0A 2EG4B 5HBLA 3HIXA 1CWTA 4WH9A 1RHSA 3F4AA 1YMDA 1C25A 1URHA 3FOJA 1CWRA 1T3KA 3FLHA 2IFDA 2JTRA 3G5JA 3ICTA 1WV9A 3HZUA 1WHBA 2WLXA 2IFVA 2MRMA 2K0ZA 2EG4A 3TG3A 3NTDA 1BOHA 3FNJA 2OUCA 1QXNA 3K9RA 3ILMA 1YM9A 3GK5A 3MZZA 4OCGA 2ORAA 3OLHA 1YS0A 3IPPA 1H4MX 4JGTA 3ICSA 2HHGA 3O3WA 2UZQA 1GN0A 2JTQA 1ORBA 1YMLA 3UTNX 1GMXA 4F67A 5HPAA 3D1PA 1OKGA
chains in the Genus database with same CATH topology
3AAYA 2FSXA 1BOIA 1DP2A 2VSWA 3NTAA 2A2KA 2GWFA 1VEEA 3P3AA 3FS5A 5HBQA 2WLRA 1RHDA 5HBPA 2JTSA 4WH7A 5LAOA 2MOIA 2DCQA 2J6PA 3IPOA 1H4KX 1HZMA 2KL3A 3R2UA 1UARA 3I2VA 3TG1B 3TP9A 3NHVA 3AAXA 3NT6A 2EG3A 3I3UA 1TQ1A 5HBOA 3OP3A 3HWIA 3ICRA 2MOLA 5LAMA 1CWSA 1YMKA 1E0CA 1YT8A 3IWHA 1QB0A 2EG4B 5HBLA 3HIXA 1CWTA 4WH9A 1RHSA 3F4AA 1YMDA 1C25A 1URHA 3FOJA 1CWRA 1T3KA 3FLHA 2IFDA 2JTRA 3G5JA 3ICTA 1WV9A 3HZUA 1WHBA 2WLXA 2IFVA 2MRMA 2K0ZA 2EG4A 3TG3A 3NTDA 1BOHA 3FNJA 2OUCA 1QXNA 3K9RA 3ILMA 1YM9A 3GK5A 3MZZA 4OCGA 2ORAA 3OLHA 1YS0A 3IPPA 1H4MX 4JGTA 3ICSA 2HHGA 3O3WA 2UZQA 1GN0A 2JTQA 1ORBA 1YMLA 3UTNX 1GMXA 4F67A 5HPAA 3D1PA 1OKGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAY A;  2FSX A;  1BOI A;  1DP2 A;  2VSW A;  3NTA A;  2A2K A;  2GWF A;  1VEE A;  3P3A A;  3FS5 A;  5HBQ A;  2WLR A;  1RHD A;  5HBP A;  2JTS A;  4WH7 A;  5LAO A;  2MOI A;  2DCQ A;  2J6P A;  3IPO A;  1H4K X;  1HZM A;  2KL3 A;  3R2U A;  1UAR A;  3I2V A;  3TG1 B;  3TP9 A;  3NHV A;  3AAX A;  3NT6 A;  2EG3 A;  3I3U A;  1TQ1 A;  5HBO A;  3OP3 A;  3HWI A;  3ICR A;  2MOL A;  5LAM A;  1CWS A;  1YMK A;  1E0C A;  1YT8 A;  3IWH A;  1QB0 A;  2EG4 B;  5HBL A;  3HIX A;  1CWT A;  4WH9 A;  1RHS A;  3F4A A;  1YMD A;  1C25 A;  1URH A;  3FOJ A;  1CWR A;  1T3K A;  3FLH A;  2IFD A;  2JTR A;  3G5J A;  3ICT A;  1WV9 A;  3HZU A;  1WHB A;  2WLX A;  2IFV A;  2MRM A;  2K0Z A;  2EG4 A;  3TG3 A;  3NTD A;  1BOH A;  3FNJ A;  2OUC A;  1QXN A;  3K9R A;  3ILM A;  1YM9 A;  3GK5 A;  3MZZ A;  4OCG A;  2ORA A;  3OLH A;  1YS0 A;  3IPP A;  1H4M X;  4JGT A;  3ICS A;  2HHG A;  3O3W A;  2UZQ A;  1GN0 A;  2JTQ A;  1ORB A;  1YML A;  3UTN X;  1GMX A;  4F67 A;  5HPA A;  3D1P A;  1OKG A; 
#chains in the Genus database with same CATH topology
 3AAY A;  2FSX A;  1BOI A;  1DP2 A;  2VSW A;  3NTA A;  2A2K A;  2GWF A;  1VEE A;  3P3A A;  3FS5 A;  5HBQ A;  2WLR A;  1RHD A;  5HBP A;  2JTS A;  4WH7 A;  5LAO A;  2MOI A;  2DCQ A;  2J6P A;  3IPO A;  1H4K X;  1HZM A;  2KL3 A;  3R2U A;  1UAR A;  3I2V A;  2Q82 A;  3TG1 B;  3TP9 A;  3NHV A;  3AAX A;  3NT6 A;  2EG3 A;  3I3U A;  1TQ1 A;  5HBO A;  3OP3 A;  3HWI A;  3ICR A;  2MOL A;  5LAM A;  1CWS A;  1YMK A;  1E0C A;  1YT8 A;  3IWH A;  1QB0 A;  2EG4 B;  5HBL A;  3HIX A;  1CWT A;  4WH9 A;  1RHS A;  3F4A A;  1YMD A;  1C25 A;  1URH A;  3FOJ A;  1CWR A;  1T3K A;  3FLH A;  2IFD A;  2JTR A;  3G5J A;  3ICT A;  1WV9 A;  3HZU A;  1WHB A;  2WLX A;  2IFV A;  2MRM A;  2K0Z A;  2EG4 A;  3TG3 A;  3NTD A;  1BOH A;  3FNJ A;  2OUC A;  1QXN A;  3K9R A;  3ILM A;  1YM9 A;  3GK5 A;  3MZZ A;  4OCG A;  2ORA A;  3OLH A;  1YS0 A;  3IPP A;  1H4M X;  4JGT A;  3ICS A;  2HHG A;  3O3W A;  2UZQ A;  1GN0 A;  2JTQ A;  1ORB A;  1YML A;  3UTN X;  1GMX A;  4F67 A;  5HPA A;  3D1P A;  1OKG A; 
#chains in the Genus database with same CATH homology
 3AAY A;  2FSX A;  1BOI A;  1DP2 A;  2VSW A;  3NTA A;  2A2K A;  2GWF A;  1VEE A;  3P3A A;  3FS5 A;  5HBQ A;  2WLR A;  1RHD A;  5HBP A;  2JTS A;  4WH7 A;  5LAO A;  2MOI A;  2DCQ A;  2J6P A;  3IPO A;  1H4K X;  1HZM A;  2KL3 A;  3R2U A;  1UAR A;  3I2V A;  3TG1 B;  3TP9 A;  3NHV A;  3AAX A;  3NT6 A;  2EG3 A;  3I3U A;  1TQ1 A;  5HBO A;  3OP3 A;  3HWI A;  3ICR A;  2MOL A;  5LAM A;  1CWS A;  1YMK A;  1E0C A;  1YT8 A;  3IWH A;  1QB0 A;  2EG4 B;  5HBL A;  3HIX A;  1CWT A;  4WH9 A;  1RHS A;  3F4A A;  1YMD A;  1C25 A;  1URH A;  3FOJ A;  1CWR A;  1T3K A;  3FLH A;  2IFD A;  2JTR A;  3G5J A;  3ICT A;  1WV9 A;  3HZU A;  1WHB A;  2WLX A;  2IFV A;  2MRM A;  2K0Z A;  2EG4 A;  3TG3 A;  3NTD A;  1BOH A;  3FNJ A;  2OUC A;  1QXN A;  3K9R A;  3ILM A;  1YM9 A;  3GK5 A;  3MZZ A;  4OCG A;  2ORA A;  3OLH A;  1YS0 A;  3IPP A;  1H4M X;  4JGT A;  3ICS A;  2HHG A;  3O3W A;  2UZQ A;  1GN0 A;  2JTQ A;  1ORB A;  1YML A;  3UTN X;  1GMX A;  4F67 A;  5HPA A;  3D1P A;  1OKG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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