5HEIA

Structure of b. megaterium nfra2
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
246
structure length
246
Chain Sequence
MNEAIRTIQDHRSIRQYTDEAVSDEHLDTIIQSAQSAASSINGQQVTIISVQDKEKKKKLSELAGNQAWIDQAPLFLIFCADFNRAKIAAELNDAPLGVTDGLESILVGATDAGISLEAATVAAESLGLGTVPIGGIRRKPLEVIELLDLPEYVFPVSGLVVGHPSDHSAKKPRLPQAAVHHRESYNHDLKSLIQDYDAEMAEYMKKRTNGADDRNWSQTVSAIYKTIYYPEVRAMLEKQGFKFEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NfrA2
publication title Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione.
pubmed doi rcsb
source organism Bacillus megaterium
total genus 72
structure length 246
sequence length 246
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2016-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 5heiA00
2H0UA 1KQDA 2ISKA 3GBHA 2HAYA 3GFDA 2ISJA 3KOQA 4XOOA 3OF4A 5KRDA 4TTBA 3HOIA 3TO0A 4DN2A 4XOMA 2WQFA 1ICUA 4XOQA 2FREA 2I7HA 3HJ9A 4BN8A 3GR3A 1OO5A 1YWQA 4TTCA 1ZCHA 3X21A 4BN7A 2WZVA 3GB5A 5HEIA 1OOQA 3GAGA 3N2SA 4BN9A 3BM1A 3EO8A 1NECA 1DS7A 3HZNA 3H4OA 5KO7A 1IDTA 3GH8A 3X22A 2YMVA 3E39A 1BKJA 3GFAA 5KO8A 1VFRA 3K6HA 1ICVA 1YLUA 4BNBA 1OONA 1V5YA 3EK3A 3GE5A 3KWKA 3M5KA 3PXVA 3TNZA 5J6CA 4URPA 1YKIA 4QLYA 3BM2A 3G14A 3EO7A 3E10A 2R01A 1ICRA 3BEMA 5HDJA 3EOFA 1OO6A 2IFAA 2ISLA 2BKJA 1VKWA 4G8SA 2WZWA 1V5ZA 1KQCA 1KQBA 2B67A 3GE6A 1F5VA 3QDLA 4EO3A 1NOXA 1YLRA 4QLXA 4BN6A
chains in the Genus database with same CATH superfamily
2H0UA 1KQDA 2ISKA 3GBHA 2HAYA 3GFDA 2ISJA 3KOQA 4XOOA 3OF4A 5KRDA 4TTBA 3HOIA 3TO0A 4DN2A 4XOMA 2WQFA 1ICUA 4XOQA 2FREA 2I7HA 3HJ9A 4BN8A 3GR3A 1OO5A 1YWQA 4TTCA 1ZCHA 3X21A 4BN7A 2WZVA 3GB5A 5HEIA 1OOQA 3GAGA 3N2SA 4BN9A 3BM1A 3EO8A 1NECA 1DS7A 3HZNA 3H4OA 5KO7A 1IDTA 3GH8A 3X22A 1J6RA 2YMVA 3E39A 1BKJA 3GFAA 5KO8A 1VFRA 3K6HA 1ICVA 1YLUA 4BNBA 1OONA 1V5YA 3EK3A 3GE5A 3KWKA 3M5KA 3PXVA 3TNZA 5J6CA 4URPA 1YKIA 4QLYA 3BM2A 3G14A 3EO7A 3E10A 2R01A 1ICRA 3BEMA 5HDJA 3EOFA 1OO6A 2IFAA 2ISLA 2BKJA 1VKWA 4G8SA 2WZWA 1V5ZA 1KQCA 1KQBA 2B67A 3GE6A 1F5VA 3QDLA 4EO3A 1NOXA 1YLRA 4QLXA 4BN6A
chains in the Genus database with same CATH topology
2H0UA 1KQDA 2ISKA 3GBHA 2HAYA 3GFDA 2ISJA 3KOQA 4XOOA 3OF4A 5KRDA 4TTBA 3HOIA 3TO0A 4DN2A 4XOMA 2WQFA 1ICUA 4XOQA 2FREA 2I7HA 3HJ9A 4BN8A 3GR3A 1OO5A 1YWQA 4TTCA 1ZCHA 3X21A 4BN7A 2WZVA 3GB5A 5HEIA 1OOQA 3GAGA 3N2SA 4BN9A 3BM1A 3EO8A 1NECA 1DS7A 3HZNA 3H4OA 5KO7A 1IDTA 3GH8A 3X22A 1J6RA 2YMVA 3E39A 1BKJA 3GFAA 5KO8A 1VFRA 3K6HA 1ICVA 1YLUA 4BNBA 1OONA 1V5YA 3EK3A 3GE5A 3KWKA 3M5KA 3PXVA 3TNZA 5J6CA 4URPA 1YKIA 4QLYA 3BM2A 3G14A 3EO7A 3E10A 2R01A 1ICRA 3BEMA 5HDJA 3EOFA 1OO6A 2IFAA 2ISLA 2BKJA 1VKWA 4G8SA 2WZWA 1V5ZA 1KQCA 1KQBA 2B67A 3GE6A 1F5VA 3QDLA 4EO3A 1NOXA 1YLRA 4QLXA 4BN6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H0U A;  1KQD A;  2ISK A;  3GBH A;  2HAY A;  3GFD A;  2ISJ A;  3KOQ A;  4XOO A;  3OF4 A;  5KRD A;  4TTB A;  3HOI A;  3TO0 A;  4DN2 A;  4XOM A;  2WQF A;  1ICU A;  4XOQ A;  2FRE A;  2I7H A;  3HJ9 A;  4BN8 A;  3GR3 A;  1OO5 A;  1YWQ A;  4TTC A;  1ZCH A;  3X21 A;  4BN7 A;  2WZV A;  3GB5 A;  5HEI A;  1OOQ A;  3GAG A;  3N2S A;  4BN9 A;  3BM1 A;  3EO8 A;  1NEC A;  1DS7 A;  3HZN A;  3H4O A;  5KO7 A;  1IDT A;  3GH8 A;  3X22 A;  2YMV A;  3E39 A;  1BKJ A;  3GFA A;  5KO8 A;  1VFR A;  3K6H A;  1ICV A;  1YLU A;  4BNB A;  1OON A;  1V5Y A;  3EK3 A;  3GE5 A;  3KWK A;  3M5K A;  3PXV A;  3TNZ A;  5J6C A;  4URP A;  1YKI A;  4QLY A;  3BM2 A;  3G14 A;  3EO7 A;  3E10 A;  2R01 A;  1ICR A;  3BEM A;  5HDJ A;  3EOF A;  1OO6 A;  2IFA A;  2ISL A;  2BKJ A;  1VKW A;  4G8S A;  2WZW A;  1V5Z A;  1KQC A;  1KQB A;  2B67 A;  3GE6 A;  1F5V A;  3QDL A;  4EO3 A;  1NOX A;  1YLR A;  4QLX A;  4BN6 A; 
#chains in the Genus database with same CATH topology
 2H0U A;  1KQD A;  2ISK A;  3GBH A;  2HAY A;  3GFD A;  2ISJ A;  3KOQ A;  4XOO A;  3OF4 A;  5KRD A;  4TTB A;  3HOI A;  3TO0 A;  4DN2 A;  4XOM A;  2WQF A;  1ICU A;  4XOQ A;  2FRE A;  2I7H A;  3HJ9 A;  4BN8 A;  3GR3 A;  1OO5 A;  1YWQ A;  4TTC A;  1ZCH A;  3X21 A;  4BN7 A;  2WZV A;  3GB5 A;  5HEI A;  1OOQ A;  3GAG A;  3N2S A;  4BN9 A;  3BM1 A;  3EO8 A;  1NEC A;  1DS7 A;  3HZN A;  3H4O A;  5KO7 A;  1IDT A;  3GH8 A;  3X22 A;  1J6R A;  2YMV A;  3E39 A;  1BKJ A;  3GFA A;  5KO8 A;  1VFR A;  3K6H A;  1ICV A;  1YLU A;  4BNB A;  1OON A;  1V5Y A;  3EK3 A;  3GE5 A;  3KWK A;  3M5K A;  3PXV A;  3TNZ A;  5J6C A;  4URP A;  1YKI A;  4QLY A;  3BM2 A;  3G14 A;  3EO7 A;  3E10 A;  2R01 A;  1ICR A;  3BEM A;  5HDJ A;  3EOF A;  1OO6 A;  2IFA A;  2ISL A;  2BKJ A;  1VKW A;  4G8S A;  2WZW A;  1V5Z A;  1KQC A;  1KQB A;  2B67 A;  3GE6 A;  1F5V A;  3QDL A;  4EO3 A;  1NOX A;  1YLR A;  4QLX A;  4BN6 A; 
#chains in the Genus database with same CATH homology
 2H0U A;  1KQD A;  2ISK A;  3GBH A;  2HAY A;  3GFD A;  2ISJ A;  3KOQ A;  4XOO A;  3OF4 A;  5KRD A;  4TTB A;  3HOI A;  3TO0 A;  4DN2 A;  4XOM A;  2WQF A;  1ICU A;  4XOQ A;  2FRE A;  2I7H A;  3HJ9 A;  4BN8 A;  3GR3 A;  1OO5 A;  1YWQ A;  4TTC A;  1ZCH A;  3X21 A;  4BN7 A;  2WZV A;  3GB5 A;  5HEI A;  1OOQ A;  3GAG A;  3N2S A;  4BN9 A;  3BM1 A;  3EO8 A;  1NEC A;  1DS7 A;  3HZN A;  3H4O A;  5KO7 A;  1IDT A;  3GH8 A;  3X22 A;  1J6R A;  2YMV A;  3E39 A;  1BKJ A;  3GFA A;  5KO8 A;  1VFR A;  3K6H A;  1ICV A;  1YLU A;  4BNB A;  1OON A;  1V5Y A;  3EK3 A;  3GE5 A;  3KWK A;  3M5K A;  3PXV A;  3TNZ A;  5J6C A;  4URP A;  1YKI A;  4QLY A;  3BM2 A;  3G14 A;  3EO7 A;  3E10 A;  2R01 A;  1ICR A;  3BEM A;  5HDJ A;  3EOF A;  1OO6 A;  2IFA A;  2ISL A;  2BKJ A;  1VKW A;  4G8S A;  2WZW A;  1V5Z A;  1KQC A;  1KQB A;  2B67 A;  3GE6 A;  1F5V A;  3QDL A;  4EO3 A;  1NOX A;  1YLR A;  4QLX A;  4BN6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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