5HL7D

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with lefamulin
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
165
structure length
165
Chain Sequence
KEKFNTEVTENLMKKFNYSSVMEVPKIDKIVVNMGVGDAVQNSKVLDNAVEELELITGQKPLVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFQGVSKKAFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTANTDEEAREL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2
publication title A novel pleuromutilin antibacterial compound, its binding mode and selectivity mechanism.
pubmed doi rcsb
total genus 21
structure length 165
sequence length 165
ec nomenclature
pdb deposition date 2016-01-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00281 Ribosomal_L5 Ribosomal protein L5
D PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A, 50s Ribosomal Protein L5; Chain: A, 5hl7D00
1VQOD 1YHQD 1YJ9D 1Q7YF 2OGKA 4WFBD 3I56D 3DLLD 2NWUA 4IOCD 1KC8F 1VQ8D 3CCVD 1MJIA 1VQ5D 5DM7D 5GADF 1W2BD 1Q81F 5MLCG 3J7ZF 3CCSD 1N8RF 2NRQA 3OW2D 3CC4D 4UY8F 3CCLD 4WFND 1Q86F 2ZJQD 4WFAD 3CCUD 4IOAD 5DM6D 1K73F 1VQ4D 1KQSD 5GAGF 5H1SH 2QA4D 3C9GA 2ZJPD 1VQND 1QVGD 1K8AF 1M90F 2PZZA 2OTJD 5GAEF 3CD6D 3CCJD 1VQ6D 3G4SD 5GAHF 3D7AA 2OTLD 3I55D 3CXCD 3PIPD 5JVGD 1VQ9D 3CC7D 1S72D 3CPWD 4U67D 4WCED 1VQKD 1K9MF 1VQ7D 1YIJD 5JVHD 1M1KF 3CC2D 2WNYA 1YI2D 1KD1F 3CCED 3G6ED 3G71D 3CF5D 1NJIF 1VQPD 1IQ4A 2QEXD 3CMAD 1YITD 1VQLD 3CCMD 2ZJRD 1YJND 1YJWD 3CMED 5HL7D 1QVFD 3CCRD 3PIOD 1Q82F 4WF9D 3CCQD 1VQMD 1JJ2D 4IO9D
chains in the Genus database with same CATH superfamily
1VQOD 1YHQD 1YJ9D 1Q7YF 2OGKA 4WFBD 3I56D 3DLLD 2NWUA 4IOCD 1KC8F 1VQ8D 3CCVD 1MJIA 1VQ5D 5DM7D 5GADF 1W2BD 1Q81F 5MLCG 3J7ZF 3CCSD 1N8RF 2NRQA 3OW2D 3CC4D 4UY8F 3CCLD 4WFND 1Q86F 2ZJQD 4WFAD 3CCUD 4IOAD 5DM6D 1K73F 1VQ4D 1KQSD 5GAGF 5H1SH 2QA4D 3C9GA 2ZJPD 1VQND 1QVGD 1K8AF 1M90F 2PZZA 2OTJD 5GAEF 3CD6D 3CCJD 1VQ6D 3G4SD 5GAHF 3D7AA 2OTLD 3I55D 3CXCD 3PIPD 5JVGD 1VQ9D 3CC7D 1S72D 3CPWD 4U67D 4WCED 1VQKD 1K9MF 1VQ7D 1YIJD 5JVHD 1M1KF 3CC2D 2WNYA 1YI2D 1KD1F 3CCED 3G6ED 3G71D 3CF5D 1NJIF 1VQPD 1IQ4A 2QEXD 3CMAD 1YITD 1VQLD 3CCMD 2ZJRD 1YJND 1YJWD 3CMED 5HL7D 1QVFD 3CCRD 3PIOD 1Q82F 4WF9D 3CCQD 1VQMD 1JJ2D 4IO9D
chains in the Genus database with same CATH topology
1VQOD 1YHQD 1YJ9D 1Q7YF 2OGKA 4WFBD 3I56D 3DLLD 2NWUA 4IOCD 1KC8F 1VQ8D 3CCVD 1MJIA 1VQ5D 5DM7D 5GADF 1W2BD 1Q81F 5MLCG 3J7ZF 3CCSD 1N8RF 2NRQA 3OW2D 3CC4D 4UY8F 3CCLD 4WFND 1Q86F 2ZJQD 4WFAD 3CCUD 4IOAD 5DM6D 1K73F 1VQ4D 1KQSD 5GAGF 5H1SH 2QA4D 3C9GA 2ZJPD 1VQND 1QVGD 1K8AF 1M90F 2PZZA 2OTJD 5GAEF 3CD6D 3CCJD 1VQ6D 3G4SD 5GAHF 3D7AA 2OTLD 3I55D 3CXCD 3PIPD 5JVGD 1VQ9D 3CC7D 1S72D 3CPWD 4U67D 4WCED 1VQKD 1K9MF 1VQ7D 1YIJD 5JVHD 1M1KF 3CC2D 2WNYA 1YI2D 1KD1F 3CCED 3G6ED 3G71D 3CF5D 1NJIF 1VQPD 1IQ4A 2QEXD 3CMAD 1YITD 1VQLD 3CCMD 2ZJRD 1YJND 1YJWD 3CMED 5HL7D 1QVFD 3CCRD 3PIOD 1Q82F 4WF9D 3CCQD 1VQMD 1JJ2D 4IO9D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQO D;  1YHQ D;  1YJ9 D;  1Q7Y F;  2OGK A;  4WFB D;  3I56 D;  3DLL D;  2NWU A;  4IOC D;  1KC8 F;  1VQ8 D;  3CCV D;  1MJI A;  1VQ5 D;  5DM7 D;  5GAD F;  1W2B D;  1Q81 F;  5MLC G;  3J7Z F;  3CCS D;  1N8R F;  2NRQ A;  3OW2 D;  3CC4 D;  4UY8 F;  3CCL D;  4WFN D;  1Q86 F;  2ZJQ D;  4WFA D;  3CCU D;  4IOA D;  5DM6 D;  1K73 F;  1VQ4 D;  1KQS D;  5GAG F;  5H1S H;  2QA4 D;  3C9G A;  2ZJP D;  1VQN D;  1QVG D;  1K8A F;  1M90 F;  2PZZ A;  2OTJ D;  5GAE F;  3CD6 D;  3CCJ D;  1VQ6 D;  3G4S D;  5GAH F;  3D7A A;  2OTL D;  3I55 D;  3CXC D;  3PIP D;  5JVG D;  1VQ9 D;  3CC7 D;  1S72 D;  3CPW D;  4U67 D;  4WCE D;  1VQK D;  1K9M F;  1VQ7 D;  1YIJ D;  5JVH D;  1M1K F;  3CC2 D;  2WNY A;  1YI2 D;  1KD1 F;  3CCE D;  3G6E D;  3G71 D;  3CF5 D;  1NJI F;  1VQP D;  1IQ4 A;  2QEX D;  3CMA D;  1YIT D;  1VQL D;  3CCM D;  2ZJR D;  1YJN D;  1YJW D;  3CME D;  5HL7 D;  1QVF D;  3CCR D;  3PIO D;  1Q82 F;  4WF9 D;  3CCQ D;  1VQM D;  1JJ2 D;  4IO9 D; 
#chains in the Genus database with same CATH topology
 1VQO D;  1YHQ D;  1YJ9 D;  1Q7Y F;  2OGK A;  4WFB D;  3I56 D;  3DLL D;  2NWU A;  4IOC D;  1KC8 F;  1VQ8 D;  3CCV D;  1MJI A;  1VQ5 D;  5DM7 D;  5GAD F;  1W2B D;  1Q81 F;  5MLC G;  3J7Z F;  3CCS D;  1N8R F;  2NRQ A;  3OW2 D;  3CC4 D;  4UY8 F;  3CCL D;  4WFN D;  1Q86 F;  2ZJQ D;  4WFA D;  3CCU D;  4IOA D;  5DM6 D;  1K73 F;  1VQ4 D;  1KQS D;  5GAG F;  5H1S H;  2QA4 D;  3C9G A;  2ZJP D;  1VQN D;  1QVG D;  1K8A F;  1M90 F;  2PZZ A;  2OTJ D;  5GAE F;  3CD6 D;  3CCJ D;  1VQ6 D;  3G4S D;  5GAH F;  3D7A A;  2OTL D;  3I55 D;  3CXC D;  3PIP D;  5JVG D;  1VQ9 D;  3CC7 D;  1S72 D;  3CPW D;  4U67 D;  4WCE D;  1VQK D;  1K9M F;  1VQ7 D;  1YIJ D;  5JVH D;  1M1K F;  3CC2 D;  2WNY A;  1YI2 D;  1KD1 F;  3CCE D;  3G6E D;  3G71 D;  3CF5 D;  1NJI F;  1VQP D;  1IQ4 A;  2QEX D;  3CMA D;  1YIT D;  1VQL D;  3CCM D;  2ZJR D;  1YJN D;  1YJW D;  3CME D;  5HL7 D;  1QVF D;  3CCR D;  3PIO D;  1Q82 F;  4WF9 D;  3CCQ D;  1VQM D;  1JJ2 D;  4IO9 D; 
#chains in the Genus database with same CATH homology
 1VQO D;  1YHQ D;  1YJ9 D;  1Q7Y F;  2OGK A;  4WFB D;  3I56 D;  3DLL D;  2NWU A;  4IOC D;  1KC8 F;  1VQ8 D;  3CCV D;  1MJI A;  1VQ5 D;  5DM7 D;  5GAD F;  1W2B D;  1Q81 F;  5MLC G;  3J7Z F;  3CCS D;  1N8R F;  2NRQ A;  3OW2 D;  3CC4 D;  4UY8 F;  3CCL D;  4WFN D;  1Q86 F;  2ZJQ D;  4WFA D;  3CCU D;  4IOA D;  5DM6 D;  1K73 F;  1VQ4 D;  1KQS D;  5GAG F;  5H1S H;  2QA4 D;  3C9G A;  2ZJP D;  1VQN D;  1QVG D;  1K8A F;  1M90 F;  2PZZ A;  2OTJ D;  5GAE F;  3CD6 D;  3CCJ D;  1VQ6 D;  3G4S D;  5GAH F;  3D7A A;  2OTL D;  3I55 D;  3CXC D;  3PIP D;  5JVG D;  1VQ9 D;  3CC7 D;  1S72 D;  3CPW D;  4U67 D;  4WCE D;  1VQK D;  1K9M F;  1VQ7 D;  1YIJ D;  5JVH D;  1M1K F;  3CC2 D;  2WNY A;  1YI2 D;  1KD1 F;  3CCE D;  3G6E D;  3G71 D;  3CF5 D;  1NJI F;  1VQP D;  1IQ4 A;  2QEX D;  3CMA D;  1YIT D;  1VQL D;  3CCM D;  2ZJR D;  1YJN D;  1YJW D;  3CME D;  5HL7 D;  1QVF D;  3CCR D;  3PIO D;  1Q82 F;  4WF9 D;  3CCQ D;  1VQM D;  1JJ2 D;  4IO9 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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