The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
54
|
sequence length |
167
|
structure length |
167
|
Chain Sequence |
MDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Viral protein
|
| molecule keywords |
ORF1a
|
| publication title |
Nsp3 of coronaviruses: Structures and functions of a large multi-domain protein.
pubmed doi rcsb |
| source organism |
Middle east respiratory syndrome coronavirus
|
| total genus |
54
|
| structure length |
167
|
| sequence length |
167
|
| ec nomenclature |
ec
2.7.7.48: RNA-directed RNA polymerase. |
| pdb deposition date | 2016-01-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01661 | Macro | Macro domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Leucine Aminopeptidase, subunit E; domain 1 | Leucine Aminopeptidase, subunit E, domain 1 |
#chains in the Genus database with same CATH superfamily 5CB3 A; 1TXZ A; 4ZY0 A; 1YD9 A; 2BFR A; 5FSX A; 3GPQ A; 1LCP A; 1LAN A; 5FSY A; 3SIG A; 4ETJ A; 3H8E A; 3T8W A; 4UML A; 3EWQ A; 2EEE A; 3PEI A; 2BFQ A; 4ESS A; 1BLL E; 5CMS A; 4ZY2 A; 4JGK A; 3Q6Z A; 2LGR A; 4K0C A; 5HIH A; 4GVV A; 2AFC A; 4ZYQ A; 2J9A A; 3EWO A; 5FSU A; 3IID A; 4K3N A; 2FAV A; 3H8F A; 5CB5 A; 4JLL A; 1ZR3 A; 3V2B A; 4ZY1 A; 4TU0 A; 1HJZ A; 1BPM A; 3V45 A; 3KQX A; 3SII A; 5FSV A; 3SIH A; 3EKE A; 3KR4 A; 3VFQ A; 1NJR A; 1LAM A; 4GUA A; 3EJF A; 4R76 A; 3KQZ A; 4R7M A; 4X2T A; 5D8N A; 5HOL A; 4ABL A; 3JZT A; 3EWP A; 4ETK A; 5E3B A; 3GQE A; 4D86 A; 1SPV A; 4KSI A; 3IJ3 A; 3GPO A; 5DUS A; 2DX6 A; 2FG1 A; 4J4Z A; 5CBM A; 3KZW A; 3GQO A; 3EWR A; 1TY8 A; 4J5S A; 5AIL A; 4JCA A; 2EWB A; 3JRU A; 4IQY A; 3KR5 A; 1LAP A; 1VHU A; 1BPN A; 3EJG A; 4JVV A; 3IIF A; 3SIJ A; 2ACF A; 4J5R A; 4J5Q A; 3H8G A; 4ZI6 A; 5FSZ A; 2FXK A; 4ZX8 A; 2VRI A; 4ABK A; 2XD7 A; 3Q71 A; 2X47 A; 3GPG A; 1GYT A; 2L8R A; 3ETI A; 3EW5 A; 1ZR5 A; 4KYB A; 4R6T A; 4GVW A; 4ZX9 A; #chains in the Genus database with same CATH topology 5CB3 A; 1TXZ A; 4ZY0 A; 1YD9 A; 2BFR A; 5FSX A; 3GPQ A; 1LCP A; 2WCT A; 1LAN A; 5FSY A; 3SIG A; 4ETJ A; 3H8E A; 3T8W A; 4UML A; 3EWQ A; 2EEE A; 3PEI A; 2BFQ A; 4ESS A; 1BLL E; 5CMS A; 4ZY2 A; 4JGK A; 3Q6Z A; 2JZD A; 2LGR A; 4K0C A; 5HIH A; 4GVV A; 2AFC A; 4ZYQ A; 2J9A A; 3EWO A; 5FSU A; 3IID A; 2W2G A; 4K3N A; 2FAV A; 3H8F A; 5CB5 A; 4JLL A; 1ZR3 A; 3V2B A; 4ZY1 A; 4TU0 A; 1HJZ A; 1BPM A; 3V45 A; 3KQX A; 2RNK A; 3SII A; 5FSV A; 3SIH A; 3EKE A; 3KR4 A; 3VFQ A; 1NJR A; 1LAM A; 4GUA A; 3EJF A; 4R76 A; 3KQZ A; 4R7M A; 4X2T A; 5D8N A; 5HOL A; 4ABL A; 3JZT A; 3EWP A; 4ETK A; 5E3B A; 3GQE A; 4D86 A; 1SPV A; 4KSI A; 3IJ3 A; 3GPO A; 2JZF A; 5DUS A; 2DX6 A; 2FG1 A; 4J4Z A; 5CBM A; 3KZW A; 3GQO A; 3EWR A; 1TY8 A; 4J5S A; 5AIL A; 4JCA A; 2EWB A; 3JRU A; 4IQY A; 3KR5 A; 1LAP A; 1VHU A; 1BPN A; 3EJG A; 4JVV A; 3IIF A; 3SIJ A; 2ACF A; 4J5R A; 4J5Q A; 3H8G A; 4ZI6 A; 5FSZ A; 2FXK A; 2KQV A; 4ZX8 A; 2VRI A; 4ABK A; 2XD7 A; 3Q71 A; 2X47 A; 2JZE A; 3GPG A; 1GYT A; 2L8R A; 3ETI A; 3EW5 A; 1ZR5 A; 4KYB A; 4R6T A; 4GVW A; 4ZX9 A; #chains in the Genus database with same CATH homology 5CB3 A; 1TXZ A; 4ZY0 A; 1YD9 A; 2BFR A; 5FSX A; 3GPQ A; 1LCP A; 1LAN A; 5FSY A; 3SIG A; 4ETJ A; 3H8E A; 3T8W A; 4UML A; 3EWQ A; 2EEE A; 3PEI A; 2BFQ A; 4ESS A; 1BLL E; 5CMS A; 4ZY2 A; 4JGK A; 3Q6Z A; 2LGR A; 4K0C A; 5HIH A; 4GVV A; 2AFC A; 4ZYQ A; 2J9A A; 3EWO A; 5FSU A; 3IID A; 4K3N A; 2FAV A; 3H8F A; 5CB5 A; 4JLL A; 1ZR3 A; 3V2B A; 4ZY1 A; 4TU0 A; 1HJZ A; 1BPM A; 3V45 A; 3KQX A; 3SII A; 5FSV A; 3SIH A; 3EKE A; 3KR4 A; 3VFQ A; 1NJR A; 1LAM A; 4GUA A; 3EJF A; 4R76 A; 3KQZ A; 4R7M A; 4X2T A; 5D8N A; 5HOL A; 4ABL A; 3JZT A; 3EWP A; 4ETK A; 5E3B A; 3GQE A; 4D86 A; 1SPV A; 4KSI A; 3IJ3 A; 3GPO A; 5DUS A; 2DX6 A; 2FG1 A; 4J4Z A; 5CBM A; 3KZW A; 3GQO A; 3EWR A; 1TY8 A; 4J5S A; 5AIL A; 4JCA A; 2EWB A; 3JRU A; 4IQY A; 3KR5 A; 1LAP A; 1VHU A; 1BPN A; 3EJG A; 4JVV A; 3IIF A; 3SIJ A; 2ACF A; 4J5R A; 4J5Q A; 3H8G A; 4ZI6 A; 5FSZ A; 2FXK A; 4ZX8 A; 2VRI A; 4ABK A; 2XD7 A; 3Q71 A; 2X47 A; 3GPG A; 1GYT A; 2L8R A; 3ETI A; 3EW5 A; 1ZR5 A; 4KYB A; 4R6T A; 4GVW A; 4ZX9 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
