The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
18
|
sequence length |
50
|
structure length |
50
|
Chain Sequence |
SLRECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFEKLEKEEAK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transferase
|
| molecule keywords |
cAMP-dependent protein kinase type I-alpha regulatory subuni
|
| publication title |
Structure of smAKAP and its regulation by PKA-mediated phosphorylation.
pubmed doi rcsb |
| source organism |
Bos taurus
|
| total genus |
18
|
| structure length |
50
|
| sequence length |
50
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2016-01-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02197 | RIIa | Regulatory subunit of type II PKA R-subunit |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | cAMP-dependent Protein Kinase, Chain A | cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain |
#chains in the Genus database with same CATH superfamily 3G36 A; 4RIQ A; 5HVZ A; 2IZY A; 1R2A A; 4F9K A; 3IM3 A; 2EZW A; 2H9R A; 1L6E A; 2KYG A; 4RT4 A; 2DRN A; 4ZP3 A; 4RTA A; 3IM4 A; #chains in the Genus database with same CATH topology 2CBG A; 5HVZ A; 4F9K A; 3UFE A; 3IM3 A; 2H9R A; 3PMI A; 3ACT A; 4RTA A; 3G36 A; 4RIQ A; 3QG0 A; 2CB9 A; 3QDE A; 2CQS A; 2RQY A; 2IZY A; 3S4A A; 3QFZ A; 2CQT A; 3ACS A; 2DRN A; 2K9Q A; 4ZP3 A; 3RRS A; 3AFJ A; 3GWH A; 3IM4 A; 3QFY A; 3S4C A; 1R2A A; 2EZW A; 2KYG A; 1L6E A; 3S4B A; 3RSY A; 3S4D A; 2OUT A; 4RT4 A; 2I15 A; 2KNG A; #chains in the Genus database with same CATH homology 3G36 A; 4RIQ A; 5HVZ A; 2IZY A; 1R2A A; 4F9K A; 3IM3 A; 2EZW A; 2H9R A; 1L6E A; 2KYG A; 4RT4 A; 2DRN A; 4ZP3 A; 4RTA A; 3IM4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
