5HW4A

Crystal structure of escherichia coli 16s rrna methyltransferase rsmi in complex with adomet
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
231
structure length
228
Chain Sequence
MGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Insights into the Methylation of C1402 in 16S rRNA by Methyltransferase RsmI
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Transferase
molecule keywords Ribosomal RNA small subunit methyltransferase I
total genus 67
structure length 228
sequence length 231
chains with identical sequence B, C
ec nomenclature ec 2.1.1.198: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase.
pdb deposition date 2016-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 5hw4A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 5hw4A01
3NEIA 1PJQA 2ED3A 2EMRA 2E08A 2EKAA 2DV3A 2PCGA 2E0KA 2DV5A 3HH1A 2EL2A 4E16A 2BB3A 2E8QA 2EL3A 2YBQA 2EJKA 2PB6A 2EK3A 2E8RA 1CBFA 2PCMA 2HUVA 1S4DA 1WNGA 1PJSA 2EGSA 2P5FA 2EH4A 2EMUA 2EK4A 2PCHA 2P5CA 2P6IA 2OWUA 3NDCA 3NUTA 2EJZA 2Z6RA 2EK7A 5HW4A 2PCKA 2EL1A 2OWFA 2EH2A 2PB5A 2E4RA 2OWKA 2HR8A 2P6DA 1WYZA 2EN5A 3KWPA 1WDEA 2HUQA 2OWVA 2E16A 2ED5A 2DV7A 2EH5A 2EGBA 2P2XA 2DEKA 2ZVCA 3FQ6A 2NPNA 3FFYA 2E4NA 2ELDA 3ND1A 2PCIA 2E7RA 1V9AA 2OWGA 2ENIA 3I4TA 1VA0A 2E17A 2EHCA 2ZVBA 2YBOA 2P9DA 2DSHA 2E07A 2DSIA 1VE2A 2EGLA 1PJTA 2P6KA 2EJJA 2E8HA 2DXXA 2HUTA 2EHLA 2DSGA 2PB4A 2EK2A 1VHVA 2ELEA 2QBUA 2DXVA 2DV4A 2E8SA 2E0NA 2PCAA 1VCEA 2CBFA 2DXWA 2HUXA 2E15A 2P6LA 2EEQA 2EL0A
chains in the Genus database with same CATH superfamily
3NEIA 1PJQA 2ED3A 2EMRA 2E08A 2EKAA 2DV3A 2PCGA 2E0KA 2DV5A 3HH1A 2EL2A 4E16A 2BB3A 3SZOA 2E8QA 2EL3A 2YBQA 2EJKA 3URKA 3T0GA 3SZLA 2PB6A 2EK3A 2E8RA 1CBFA 2PCMA 3UWMA 2HUVA 3ZGLA 1S4DA 1WNGA 4MUXA 1PJSA 2EGSA 2P5FA 2EH4A 2EMUA 2EK4A 4MV0A 2PCHA 3ZGNA 2P5CA 2P6IA 3SZUA 2OWUA 4MUYA 3NDCA 3NUTA 3T0FA 2EJZA 2Z6RA 2EK7A 5HW4A 2PCKA 2EL1A 2OWFA 2EH2A 2PB5A 2E4RA 2OWKA 2HR8A 2P6DA 1WYZA 4H4CA 2EN5A 3KWPA 1WDEA 2HUQA 2OWVA 2E16A 2ED5A 2DV7A 2EH5A 3UV3A 4H4EA 2EGBA 2P2XA 2DEKA 2ZVCA 3FQ6A 2NPNA 3FFYA 3LMMA 2E4NA 2ELDA 3ND1A 2PCIA 2E7RA 1V9AA 2OWGA 2ENIA 4N7BA 3I4TA 3F7TA 1VA0A 2E17A 2EHCA 2ZVBA 2YBOA 2P9DA 2KYYA 3KE9A 2DSHA 4MV5A 3KELA 2E07A 2DSIA 1VE2A 2EGLA 1PJTA 2P6KA 2EJJA 3DNFA 4H4DA 2E8HA 3KEFA 2DXXA 2HUTA 4EB3A 2EHLA 3UV7A 3KE8A 2DSGA 2PB4A 3UTDA 2EK2A 1VHVA 2ELEA 3TIXB 2QBUA 3UV6A 2DXVA 3UTCA 2DV4A 2E8SA 2E0NA 2PCAA 1VCEA 3KEMA 2CBFA 2DXWA 2HUXA 2E15A 2P6LA 2EEQA 2EL0A
chains in the Genus database with same CATH topology
3NEIA 1PJQA 2ED3A 2EMRA 2E08A 2EKAA 2DV3A 2PCGA 2E0KA 2DV5A 3HH1A 2EL2A 4E16A 2BB3A 3SZOA 2E8QA 2EL3A 2YBQA 2EJKA 3URKA 3T0GA 3SZLA 2PB6A 2EK3A 2E8RA 1CBFA 2PCMA 3UWMA 2HUVA 3ZGLA 1S4DA 1WNGA 4MUXA 1PJSA 2EGSA 2P5FA 2EH4A 2EMUA 2EK4A 4MV0A 2PCHA 3ZGNA 2P5CA 2P6IA 3SZUA 2OWUA 4MUYA 3NDCA 3NUTA 3T0FA 2EJZA 2Z6RA 2EK7A 5HW4A 2PCKA 2EL1A 2OWFA 2EH2A 2PB5A 2E4RA 2OWKA 2HR8A 2P6DA 1WYZA 4H4CA 2EN5A 3KWPA 1WDEA 2HUQA 2OWVA 2E16A 2ED5A 2DV7A 2EH5A 3UV3A 4H4EA 2EGBA 2P2XA 2DEKA 2ZVCA 3FQ6A 2NPNA 3FFYA 3LMMA 2E4NA 2ELDA 3ND1A 2PCIA 2E7RA 1V9AA 2OWGA 2ENIA 4N7BA 3I4TA 3F7TA 1VA0A 2E17A 2EHCA 2ZVBA 2YBOA 2P9DA 2KYYA 3KE9A 2DSHA 4MV5A 3KELA 2E07A 2DSIA 1VE2A 2EGLA 1PJTA 2P6KA 2EJJA 3DNFA 4H4DA 2E8HA 3KEFA 2DXXA 2HUTA 4EB3A 2EHLA 3UV7A 3KE8A 2DSGA 2PB4A 3UTDA 2EK2A 1VHVA 2ELEA 3TIXB 2QBUA 3UV6A 2DXVA 3UTCA 2DV4A 2E8SA 2E0NA 2PCAA 1VCEA 3KEMA 2CBFA 2DXWA 2HUXA 2E15A 2P6LA 2EEQA 2EL0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NEI A;  1PJQ A;  2ED3 A;  2EMR A;  2E08 A;  2EKA A;  2DV3 A;  2PCG A;  2E0K A;  2DV5 A;  3HH1 A;  2EL2 A;  4E16 A;  2BB3 A;  2E8Q A;  2EL3 A;  2YBQ A;  2EJK A;  2PB6 A;  2EK3 A;  2E8R A;  1CBF A;  2PCM A;  2HUV A;  1S4D A;  1WNG A;  1PJS A;  2EGS A;  2P5F A;  2EH4 A;  2EMU A;  2EK4 A;  2PCH A;  2P5C A;  2P6I A;  2OWU A;  3NDC A;  3NUT A;  2EJZ A;  2Z6R A;  2EK7 A;  5HW4 A;  2PCK A;  2EL1 A;  2OWF A;  2EH2 A;  2PB5 A;  2E4R A;  2OWK A;  2HR8 A;  2P6D A;  1WYZ A;  2EN5 A;  3KWP A;  1WDE A;  2HUQ A;  2OWV A;  2E16 A;  2ED5 A;  2DV7 A;  2EH5 A;  2EGB A;  2P2X A;  2DEK A;  2ZVC A;  3FQ6 A;  2NPN A;  3FFY A;  2E4N A;  2ELD A;  3ND1 A;  2PCI A;  2E7R A;  1V9A A;  2OWG A;  2ENI A;  3I4T A;  1VA0 A;  2E17 A;  2EHC A;  2ZVB A;  2YBO A;  2P9D A;  2DSH A;  2E07 A;  2DSI A;  1VE2 A;  2EGL A;  1PJT A;  2P6K A;  2EJJ A;  2E8H A;  2DXX A;  2HUT A;  2EHL A;  2DSG A;  2PB4 A;  2EK2 A;  1VHV A;  2ELE A;  2QBU A;  2DXV A;  2DV4 A;  2E8S A;  2E0N A;  2PCA A;  1VCE A;  2CBF A;  2DXW A;  2HUX A;  2E15 A;  2P6L A;  2EEQ A;  2EL0 A; 
#chains in the Genus database with same CATH topology
 3NEI A;  1PJQ A;  2ED3 A;  2EMR A;  2E08 A;  2EKA A;  2DV3 A;  2PCG A;  2E0K A;  2DV5 A;  3HH1 A;  2EL2 A;  4E16 A;  2BB3 A;  3SZO A;  2E8Q A;  2EL3 A;  2YBQ A;  2EJK A;  3URK A;  3T0G A;  3SZL A;  2PB6 A;  2EK3 A;  2E8R A;  1CBF A;  2PCM A;  3UWM A;  2HUV A;  3ZGL A;  1S4D A;  1WNG A;  4MUX A;  1PJS A;  2EGS A;  2P5F A;  2EH4 A;  2EMU A;  2EK4 A;  4MV0 A;  2PCH A;  3ZGN A;  2P5C A;  2P6I A;  3SZU A;  2OWU A;  4MUY A;  3NDC A;  3NUT A;  3T0F A;  2EJZ A;  2Z6R A;  2EK7 A;  5HW4 A;  2PCK A;  2EL1 A;  2OWF A;  2EH2 A;  2PB5 A;  2E4R A;  2OWK A;  2HR8 A;  2P6D A;  1WYZ A;  4H4C A;  2EN5 A;  3KWP A;  1WDE A;  2HUQ A;  2OWV A;  2E16 A;  2ED5 A;  2DV7 A;  2EH5 A;  3UV3 A;  4H4E A;  2EGB A;  2P2X A;  2DEK A;  2ZVC A;  3FQ6 A;  2NPN A;  3FFY A;  3LMM A;  2E4N A;  2ELD A;  3ND1 A;  2PCI A;  2E7R A;  1V9A A;  2OWG A;  2ENI A;  4N7B A;  3I4T A;  3F7T A;  1VA0 A;  2E17 A;  2EHC A;  2ZVB A;  2YBO A;  2P9D A;  2KYY A;  3KE9 A;  2DSH A;  4MV5 A;  3KEL A;  2E07 A;  2DSI A;  1VE2 A;  2EGL A;  1PJT A;  2P6K A;  2EJJ A;  3DNF A;  4H4D A;  2E8H A;  3KEF A;  2DXX A;  2HUT A;  4EB3 A;  2EHL A;  3UV7 A;  3KE8 A;  2DSG A;  2PB4 A;  3UTD A;  2EK2 A;  1VHV A;  2ELE A;  3TIX B;  2QBU A;  3UV6 A;  2DXV A;  3UTC A;  2DV4 A;  2E8S A;  2E0N A;  2PCA A;  1VCE A;  3KEM A;  2CBF A;  2DXW A;  2HUX A;  2E15 A;  2P6L A;  2EEQ A;  2EL0 A; 
#chains in the Genus database with same CATH homology
 3NEI A;  1PJQ A;  2ED3 A;  2EMR A;  2E08 A;  2EKA A;  2DV3 A;  2PCG A;  2E0K A;  2DV5 A;  3HH1 A;  2EL2 A;  4E16 A;  2BB3 A;  3SZO A;  2E8Q A;  2EL3 A;  2YBQ A;  2EJK A;  3URK A;  3T0G A;  3SZL A;  2PB6 A;  2EK3 A;  2E8R A;  1CBF A;  2PCM A;  3UWM A;  2HUV A;  3ZGL A;  1S4D A;  1WNG A;  4MUX A;  1PJS A;  2EGS A;  2P5F A;  2EH4 A;  2EMU A;  2EK4 A;  4MV0 A;  2PCH A;  3ZGN A;  2P5C A;  2P6I A;  3SZU A;  2OWU A;  4MUY A;  3NDC A;  3NUT A;  3T0F A;  2EJZ A;  2Z6R A;  2EK7 A;  5HW4 A;  2PCK A;  2EL1 A;  2OWF A;  2EH2 A;  2PB5 A;  2E4R A;  2OWK A;  2HR8 A;  2P6D A;  1WYZ A;  4H4C A;  2EN5 A;  3KWP A;  1WDE A;  2HUQ A;  2OWV A;  2E16 A;  2ED5 A;  2DV7 A;  2EH5 A;  3UV3 A;  4H4E A;  2EGB A;  2P2X A;  2DEK A;  2ZVC A;  3FQ6 A;  2NPN A;  3FFY A;  3LMM A;  2E4N A;  2ELD A;  3ND1 A;  2PCI A;  2E7R A;  1V9A A;  2OWG A;  2ENI A;  4N7B A;  3I4T A;  3F7T A;  1VA0 A;  2E17 A;  2EHC A;  2ZVB A;  2YBO A;  2P9D A;  2KYY A;  3KE9 A;  2DSH A;  4MV5 A;  3KEL A;  2E07 A;  2DSI A;  1VE2 A;  2EGL A;  1PJT A;  2P6K A;  2EJJ A;  3DNF A;  4H4D A;  2E8H A;  3KEF A;  2DXX A;  2HUT A;  4EB3 A;  2EHL A;  3UV7 A;  3KE8 A;  2DSG A;  2PB4 A;  3UTD A;  2EK2 A;  1VHV A;  2ELE A;  3TIX B;  2QBU A;  3UV6 A;  2DXV A;  3UTC A;  2DV4 A;  2E8S A;  2E0N A;  2PCA A;  1VCE A;  3KEM A;  2CBF A;  2DXW A;  2HUX A;  2E15 A;  2P6L A;  2EEQ A;  2EL0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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