5HW4A

Crystal structure of escherichia coli 16s rrna methyltransferase rsmi in complex with adomet
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
231
structure length
228
Chain Sequence
MGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Insights into the Methylation of C1402 in 16S rRNA by Methyltransferase RsmI
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Transferase
molecule keywords Ribosomal RNA small subunit methyltransferase I
total genus 67
structure length 228
sequence length 231
chains with identical sequence B, C
ec nomenclature ec 2.1.1.198: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase.
pdb deposition date 2016-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 5hw4A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 5hw4A01
1S4DA 3FFYA 2EK7A 2E4RA 2PB6A 2P6DA 2EK4A 2EEQA 2P5FA 5HW4A 2E0NA 3FQ6A 2PCHA 2EL0A 3I4TA 2DV3A 2PCMA 2EGLA 1PJTA 2DV7A 2OWKA 3NDCA 2QBUA 2HUVA 1PJSA 2E8HA 1PJQA 3NUTA 2HR8A 2E17A 1VCEA 2EL1A 2P2XA 2E8SA 1CBFA 2OWFA 2EH5A 2PCIA 3ND1A 2EL3A 2EGBA 1WDEA 2P6KA 2EH2A 2ELEA 4E16A 2DSGA 3HH1A 2OWGA 1V9AA 2E0KA 1WNGA 2E8QA 3NEIA 2E08A 2ELDA 2ZVBA 2OWVA 2DXVA 2E15A 2P9DA 2EN5A 2EKAA 2E07A 2EMRA 2OWUA 2BB3A 2DV4A 2DXWA 2PB4A 2ED3A 2ENIA 2E8RA 2PCKA 2YBOA 2EH4A 2E7RA 2EJZA 3KWPA 2EL2A 1VHVA 2EJJA 2Z6RA 1WYZA 2ED5A 2PCGA 2DXXA 2DSHA 2DSIA 1VE2A 2EGSA 2P6LA 2HUTA 2P5CA 2ZVCA 2DV5A 2DEKA 2HUQA 2CBFA 2HUXA 2NPNA 2EHCA 2P6IA 2E4NA 2EK3A 2YBQA 2EJKA 2EHLA 2PB5A 2E16A 2EK2A 2PCAA 2EMUA 1VA0A
chains in the Genus database with same CATH superfamily
3T0GA 3ZGNA 3SZUA 1S4DA 4MV0A 3FFYA 2EK7A 2E4RA 2PB6A 2P6DA 2EK4A 2EEQA 2P5FA 5HW4A 2E0NA 3FQ6A 4H4EA 3KE9A 2PCHA 2EL0A 3I4TA 2DV3A 2PCMA 2EGLA 1PJTA 2DV7A 2OWKA 3NDCA 2QBUA 2HUVA 1PJSA 2E8HA 1PJQA 3NUTA 2HR8A 3F7TA 2E17A 3TIXB 1VCEA 4MUXA 2EL1A 3T0FA 3UWMA 2P2XA 2E8SA 1CBFA 2OWFA 3UTCA 2EH5A 2PCIA 3LMMA 3KE8A 3ZGLA 3ND1A 2EL3A 2EGBA 1WDEA 2P6KA 2EH2A 2ELEA 4E16A 3DNFA 2DSGA 3HH1A 2OWGA 3UV7A 1V9AA 2E0KA 3KEMA 1WNGA 4EB3A 2E8QA 3NEIA 2E08A 2ELDA 3UTDA 2ZVBA 2OWVA 2DXVA 2E15A 2P9DA 2EN5A 4MUYA 3UV6A 2EKAA 3KEFA 2E07A 2EMRA 2OWUA 2BB3A 2DV4A 2DXWA 2PB4A 3UV3A 2ED3A 2ENIA 2E8RA 2PCKA 2YBOA 2EH4A 2E7RA 2EJZA 3KWPA 3SZLA 3KELA 4N7BA 2EL2A 1VHVA 2EJJA 2Z6RA 1WYZA 2ED5A 2PCGA 2DXXA 2DSHA 2DSIA 1VE2A 2EGSA 2P6LA 2HUTA 2P5CA 2ZVCA 2KYYA 4MV5A 2DV5A 2DEKA 2HUQA 2CBFA 2HUXA 4H4DA 2NPNA 3URKA 4H4CA 2EHCA 2P6IA 2E4NA 2EK3A 2YBQA 2EJKA 2EHLA 2PB5A 2E16A 2EK2A 2PCAA 2EMUA 1VA0A 3SZOA
chains in the Genus database with same CATH topology
3T0GA 3ZGNA 3SZUA 1S4DA 4MV0A 3FFYA 2EK7A 2E4RA 2PB6A 2P6DA 2EK4A 2EEQA 2P5FA 5HW4A 2E0NA 3FQ6A 4H4EA 3KE9A 2PCHA 2EL0A 3I4TA 2DV3A 2PCMA 2EGLA 1PJTA 2DV7A 2OWKA 3NDCA 2QBUA 2HUVA 1PJSA 2E8HA 1PJQA 3NUTA 2HR8A 3F7TA 2E17A 3TIXB 1VCEA 4MUXA 2EL1A 3T0FA 3UWMA 2P2XA 2E8SA 1CBFA 2OWFA 3UTCA 2EH5A 2PCIA 3LMMA 3KE8A 3ZGLA 3ND1A 2EL3A 2EGBA 1WDEA 2P6KA 2EH2A 2ELEA 4E16A 3DNFA 2DSGA 3HH1A 2OWGA 3UV7A 1V9AA 2E0KA 3KEMA 1WNGA 4EB3A 2E8QA 3NEIA 2E08A 2ELDA 3UTDA 2ZVBA 2OWVA 2DXVA 2E15A 2P9DA 2EN5A 4MUYA 3UV6A 2EKAA 3KEFA 2E07A 2EMRA 2OWUA 2BB3A 2DV4A 2DXWA 2PB4A 3UV3A 2ED3A 2ENIA 2E8RA 2PCKA 2YBOA 2EH4A 2E7RA 2EJZA 3KWPA 3SZLA 3KELA 4N7BA 2EL2A 1VHVA 2EJJA 2Z6RA 1WYZA 2ED5A 2PCGA 2DXXA 2DSHA 2DSIA 1VE2A 2EGSA 2P6LA 2HUTA 2P5CA 2ZVCA 2KYYA 4MV5A 2DV5A 2DEKA 2HUQA 2CBFA 2HUXA 4H4DA 2NPNA 3URKA 4H4CA 2EHCA 2P6IA 2E4NA 2EK3A 2YBQA 2EJKA 2EHLA 2PB5A 2E16A 2EK2A 2PCAA 2EMUA 1VA0A 3SZOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S4D A;  3FFY A;  2EK7 A;  2E4R A;  2PB6 A;  2P6D A;  2EK4 A;  2EEQ A;  2P5F A;  5HW4 A;  2E0N A;  3FQ6 A;  2PCH A;  2EL0 A;  3I4T A;  2DV3 A;  2PCM A;  2EGL A;  1PJT A;  2DV7 A;  2OWK A;  3NDC A;  2QBU A;  2HUV A;  1PJS A;  2E8H A;  1PJQ A;  3NUT A;  2HR8 A;  2E17 A;  1VCE A;  2EL1 A;  2P2X A;  2E8S A;  1CBF A;  2OWF A;  2EH5 A;  2PCI A;  3ND1 A;  2EL3 A;  2EGB A;  1WDE A;  2P6K A;  2EH2 A;  2ELE A;  4E16 A;  2DSG A;  3HH1 A;  2OWG A;  1V9A A;  2E0K A;  1WNG A;  2E8Q A;  3NEI A;  2E08 A;  2ELD A;  2ZVB A;  2OWV A;  2DXV A;  2E15 A;  2P9D A;  2EN5 A;  2EKA A;  2E07 A;  2EMR A;  2OWU A;  2BB3 A;  2DV4 A;  2DXW A;  2PB4 A;  2ED3 A;  2ENI A;  2E8R A;  2PCK A;  2YBO A;  2EH4 A;  2E7R A;  2EJZ A;  3KWP A;  2EL2 A;  1VHV A;  2EJJ A;  2Z6R A;  1WYZ A;  2ED5 A;  2PCG A;  2DXX A;  2DSH A;  2DSI A;  1VE2 A;  2EGS A;  2P6L A;  2HUT A;  2P5C A;  2ZVC A;  2DV5 A;  2DEK A;  2HUQ A;  2CBF A;  2HUX A;  2NPN A;  2EHC A;  2P6I A;  2E4N A;  2EK3 A;  2YBQ A;  2EJK A;  2EHL A;  2PB5 A;  2E16 A;  2EK2 A;  2PCA A;  2EMU A;  1VA0 A; 
#chains in the Genus database with same CATH topology
 3T0G A;  3ZGN A;  3SZU A;  1S4D A;  4MV0 A;  3FFY A;  2EK7 A;  2E4R A;  2PB6 A;  2P6D A;  2EK4 A;  2EEQ A;  2P5F A;  5HW4 A;  2E0N A;  3FQ6 A;  4H4E A;  3KE9 A;  2PCH A;  2EL0 A;  3I4T A;  2DV3 A;  2PCM A;  2EGL A;  1PJT A;  2DV7 A;  2OWK A;  3NDC A;  2QBU A;  2HUV A;  1PJS A;  2E8H A;  1PJQ A;  3NUT A;  2HR8 A;  3F7T A;  2E17 A;  3TIX B;  1VCE A;  4MUX A;  2EL1 A;  3T0F A;  3UWM A;  2P2X A;  2E8S A;  1CBF A;  2OWF A;  3UTC A;  2EH5 A;  2PCI A;  3LMM A;  3KE8 A;  3ZGL A;  3ND1 A;  2EL3 A;  2EGB A;  1WDE A;  2P6K A;  2EH2 A;  2ELE A;  4E16 A;  3DNF A;  2DSG A;  3HH1 A;  2OWG A;  3UV7 A;  1V9A A;  2E0K A;  3KEM A;  1WNG A;  4EB3 A;  2E8Q A;  3NEI A;  2E08 A;  2ELD A;  3UTD A;  2ZVB A;  2OWV A;  2DXV A;  2E15 A;  2P9D A;  2EN5 A;  4MUY A;  3UV6 A;  2EKA A;  3KEF A;  2E07 A;  2EMR A;  2OWU A;  2BB3 A;  2DV4 A;  2DXW A;  2PB4 A;  3UV3 A;  2ED3 A;  2ENI A;  2E8R A;  2PCK A;  2YBO A;  2EH4 A;  2E7R A;  2EJZ A;  3KWP A;  3SZL A;  3KEL A;  4N7B A;  2EL2 A;  1VHV A;  2EJJ A;  2Z6R A;  1WYZ A;  2ED5 A;  2PCG A;  2DXX A;  2DSH A;  2DSI A;  1VE2 A;  2EGS A;  2P6L A;  2HUT A;  2P5C A;  2ZVC A;  2KYY A;  4MV5 A;  2DV5 A;  2DEK A;  2HUQ A;  2CBF A;  2HUX A;  4H4D A;  2NPN A;  3URK A;  4H4C A;  2EHC A;  2P6I A;  2E4N A;  2EK3 A;  2YBQ A;  2EJK A;  2EHL A;  2PB5 A;  2E16 A;  2EK2 A;  2PCA A;  2EMU A;  1VA0 A;  3SZO A; 
#chains in the Genus database with same CATH homology
 3T0G A;  3ZGN A;  3SZU A;  1S4D A;  4MV0 A;  3FFY A;  2EK7 A;  2E4R A;  2PB6 A;  2P6D A;  2EK4 A;  2EEQ A;  2P5F A;  5HW4 A;  2E0N A;  3FQ6 A;  4H4E A;  3KE9 A;  2PCH A;  2EL0 A;  3I4T A;  2DV3 A;  2PCM A;  2EGL A;  1PJT A;  2DV7 A;  2OWK A;  3NDC A;  2QBU A;  2HUV A;  1PJS A;  2E8H A;  1PJQ A;  3NUT A;  2HR8 A;  3F7T A;  2E17 A;  3TIX B;  1VCE A;  4MUX A;  2EL1 A;  3T0F A;  3UWM A;  2P2X A;  2E8S A;  1CBF A;  2OWF A;  3UTC A;  2EH5 A;  2PCI A;  3LMM A;  3KE8 A;  3ZGL A;  3ND1 A;  2EL3 A;  2EGB A;  1WDE A;  2P6K A;  2EH2 A;  2ELE A;  4E16 A;  3DNF A;  2DSG A;  3HH1 A;  2OWG A;  3UV7 A;  1V9A A;  2E0K A;  3KEM A;  1WNG A;  4EB3 A;  2E8Q A;  3NEI A;  2E08 A;  2ELD A;  3UTD A;  2ZVB A;  2OWV A;  2DXV A;  2E15 A;  2P9D A;  2EN5 A;  4MUY A;  3UV6 A;  2EKA A;  3KEF A;  2E07 A;  2EMR A;  2OWU A;  2BB3 A;  2DV4 A;  2DXW A;  2PB4 A;  3UV3 A;  2ED3 A;  2ENI A;  2E8R A;  2PCK A;  2YBO A;  2EH4 A;  2E7R A;  2EJZ A;  3KWP A;  3SZL A;  3KEL A;  4N7B A;  2EL2 A;  1VHV A;  2EJJ A;  2Z6R A;  1WYZ A;  2ED5 A;  2PCG A;  2DXX A;  2DSH A;  2DSI A;  1VE2 A;  2EGS A;  2P6L A;  2HUT A;  2P5C A;  2ZVC A;  2KYY A;  4MV5 A;  2DV5 A;  2DEK A;  2HUQ A;  2CBF A;  2HUX A;  4H4D A;  2NPN A;  3URK A;  4H4C A;  2EHC A;  2P6I A;  2E4N A;  2EK3 A;  2YBQ A;  2EJK A;  2EHL A;  2PB5 A;  2E16 A;  2EK2 A;  2PCA A;  2EMU A;  1VA0 A;  3SZO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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