5HYPA

Structure of human c4b-binding protein alpha cain ccp domains 1 and 2 in complex with the hypervariable region of group a streptococcus m28 protein
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
125
structure length
125
Chain Sequence
SNCGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVYNTFCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHPLPQCEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords C4b-binding protein alpha chain
publication title Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.
pubmed doi rcsb
source organism Homo sapiens
total genus 16
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2016-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 5hypA02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 5hypA01
3OEDC 1PPQA 2CG7A 1OK2A 2XRBA 4FXGG 1Q3XA 1HFIA 5HYTB 2RL0A 1FBRA 2XQWC 1OJYA 2IZ3A 3O8EB 3TVJA 3EJHA 1TPGA 5HZPB 1CKLA 1GKNA 2BZMA 1OJWA 1H2PP 2MCYA 2O39C 2YBYA 1E88A 4YNXA 2XWJI 1H03P 2B5ID 3OXUD 1OK3A 4B2RA 2XRDA 4ONTD 3SW0X 1GPZA 1OK1A 4AYDA 3L89M 2EC3A 3OP8A 2RLQA 2A55A 5JPMG 2CKUA 3M7PA 1NWVA 3GXEA 1H04P 2RKZA 4AYMA 1O9AA 1MD7A 4LOTA 1Z92B 4LOSA 5HYPA 1SRZA 1E8BA 3IX0A 4F4OC 2MCZA 2W81A 2ERJA 3ZD1A 3R62A 3ERBA 3ZRZA 4ZH1D 1ELVA 5I0QB 4DJZA 2CG6A 2KMSA 4B2SA 4PZ5A 4AYEA 5FO8C 3CALA 1UOTP 2KRIA 2IZ4A 1U5MA 2V8EA 1VVDA 1TPNA 1HCCA 2LOJA 1G4FA 1QO6A 1HFHA 2QY0A 2RLPA 3NFPI 1OK9A 1QGBA 1QUBA 2JGWA 2W80A 3INBC 1SS2A 1GHQB 2UWNA 1C1ZA 2G7IA 2WIIC 3GOVA 1G4GA 3IU3I 4AYIA 1LY2A 3MQLA 2EHFA 4JHSA 4KKDA 2JRAA 4MUCA 4CSYA 5HYUB 3T5OA 1H2QP 1MD8A 3ZD2A 4C16A 1VVCA 3KXVA 4A5WB 4K12A 2JGXA 4WJG2 3RJ3D 1E5GA 2XWBF 1ZJKA 2YRAA 1GKGA 1OJVA 4J38B 1TPMA 3KZJA 4IGDA 2RKYA
chains in the Genus database with same CATH superfamily
3OEDC 1PPQA 2CG7A 1OK2A 2XRBA 3K3TA 4FXGG 3WSXA 1Q3XA 1HFIA 5HYTB 2RL0A 1FBRA 2XQWC 1OJYA 2IZ3A 3O8EB 3TVJA 3EJHA 3ZLDA 1TPGA 5HZPB 1CKLA 1GKNA 2BZMA 1OJWA 1H2PP 2Y8SA 5DN4A 2MCYA 2O39C 2YBYA 1E88A 3FGTA 2X2ZA 4YNXA 2XWJI 2ZYCA 1H03P 2B5ID 3OXUD 1OK3A 4PO7A 3FGRA 4B2RA 2XRDA 2Y8RA 4ONTD 3SW0X 1GPZA 1OK1A 1RLHA 4AYDA 3L89M 2EC3A 3OP8A 2RLQA 2A55A 5JPMG 2CKUA 3M7PA 1NWVA 3GXEA 4APLA 1H04P 2RKZA 4AYMA 1O9AA 1MD7A 4LOTA 1Z92B 4BWCA 4LOSA 5HYPA 1SRZA 1E8BA 3IX0A 4F4OC 2MCZA 2W81A 2ERJA 3ZD1A 3R62A 3ERBA 3ZRZA 4ZH1D 3ZLEA 1ELVA 5I0QB 4MSLA 4DJZA 2CG6A 2KMSA 4B2SA 4PZ5A 4N7EA 4AYEA 5FO8C 3CALA 2Y8TA 1UOTP 3WSYA 2KRIA 2IZ4A 1U5MA 2V8EA 1VVDA 1TPNA 5DN5A 1HCCA 2LOJA 1G4FA 1QO6A 1HFHA 2QY0A 2RLPA 3NFPI 1OK9A 1QGBA 1QUBA 2JGWA 2W80A 3INBC 1SS2A 1GHQB 2UWNA 1C1ZA 2G7IA 3CI0J 2WIIC 3F6KA 3GOVA 1G4GA 3NJAA 3IU3I 4AYIA 1LY2A 3MQLA 2EHFA 4JHSA 4KKDA 2JRAA 4MUCA 4CSYA 5HYUB 3T5OA 1H2QP 1MD8A 3VWOA 3ZD2A 4C16A 1VVCA 3KXVA 4A5WB 4K12A 2JGXA 4WJG2 3RJ3D 2I2LA 1E5GA 2XWBF 1ZJKA 2YRAA 1GKGA 1OJVA 4J38B 1TPMA 3KZJA 4IGDA 4YIZA 2RKYA
chains in the Genus database with same CATH topology
3OEDC 1PPQA 2CG7A 1OK2A 2XRBA 4FXGG 1Q3XA 1HFIA 5HYTB 2RL0A 1FBRA 2XQWC 1OJYA 2IZ3A 3O8EB 3TVJA 3EJHA 1TPGA 5HZPB 1CKLA 1GKNA 2BZMA 1OJWA 1H2PP 2MCYA 2O39C 2YBYA 1E88A 4YNXA 2XWJI 1H03P 2B5ID 3OXUD 1OK3A 4B2RA 2XRDA 4ONTD 3SW0X 1GPZA 1OK1A 4AYDA 3L89M 2EC3A 3OP8A 2RLQA 2A55A 5JPMG 2CKUA 3M7PA 1NWVA 3GXEA 1H04P 2RKZA 4AYMA 1O9AA 1MD7A 4LOTA 1Z92B 4LOSA 5HYPA 1SRZA 1E8BA 3IX0A 4F4OC 2MCZA 2W81A 2ERJA 3ZD1A 3R62A 3ERBA 3ZRZA 4ZH1D 1ELVA 5I0QB 4DJZA 2CG6A 2KMSA 4B2SA 4PZ5A 4AYEA 5FO8C 3CALA 1UOTP 2KRIA 2IZ4A 1U5MA 2V8EA 1VVDA 1TPNA 1HCCA 2LOJA 1G4FA 1QO6A 1HFHA 2QY0A 2RLPA 3NFPI 1OK9A 1QGBA 1QUBA 2JGWA 2W80A 3INBC 1SS2A 1GHQB 2UWNA 1C1ZA 2G7IA 2WIIC 3GOVA 1G4GA 3IU3I 4AYIA 1LY2A 3MQLA 2EHFA 4JHSA 4KKDA 2JRAA 4MUCA 4CSYA 5HYUB 3T5OA 1H2QP 1MD8A 3ZD2A 4C16A 1VVCA 3KXVA 4A5WB 4K12A 2JGXA 4WJG2 3RJ3D 1E5GA 2XWBF 1ZJKA 2YRAA 1GKGA 1OJVA 4J38B 1TPMA 3KZJA 4IGDA 2RKYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OED C;  1PPQ A;  2CG7 A;  1OK2 A;  2XRB A;  4FXG G;  1Q3X A;  1HFI A;  5HYT B;  2RL0 A;  1FBR A;  2XQW C;  1OJY A;  2IZ3 A;  3O8E B;  3TVJ A;  3EJH A;  1TPG A;  5HZP B;  1CKL A;  1GKN A;  2BZM A;  1OJW A;  1H2P P;  2MCY A;  2O39 C;  2YBY A;  1E88 A;  4YNX A;  2XWJ I;  1H03 P;  2B5I D;  3OXU D;  1OK3 A;  4B2R A;  2XRD A;  4ONT D;  3SW0 X;  1GPZ A;  1OK1 A;  4AYD A;  3L89 M;  2EC3 A;  3OP8 A;  2RLQ A;  2A55 A;  5JPM G;  2CKU A;  3M7P A;  1NWV A;  3GXE A;  1H04 P;  2RKZ A;  4AYM A;  1O9A A;  1MD7 A;  4LOT A;  1Z92 B;  4LOS A;  5HYP A;  1SRZ A;  1E8B A;  3IX0 A;  4F4O C;  2MCZ A;  2W81 A;  2ERJ A;  3ZD1 A;  3R62 A;  3ERB A;  3ZRZ A;  4ZH1 D;  1ELV A;  5I0Q B;  4DJZ A;  2CG6 A;  2KMS A;  4B2S A;  4PZ5 A;  4AYE A;  5FO8 C;  3CAL A;  1UOT P;  2KRI A;  2IZ4 A;  1U5M A;  2V8E A;  1VVD A;  1TPN A;  1HCC A;  2LOJ A;  1G4F A;  1QO6 A;  1HFH A;  2QY0 A;  2RLP A;  3NFP I;  1OK9 A;  1QGB A;  1QUB A;  2JGW A;  2W80 A;  3INB C;  1SS2 A;  1GHQ B;  2UWN A;  1C1Z A;  2G7I A;  2WII C;  3GOV A;  1G4G A;  3IU3 I;  4AYI A;  1LY2 A;  3MQL A;  2EHF A;  4JHS A;  4KKD A;  2JRA A;  4MUC A;  4CSY A;  5HYU B;  3T5O A;  1H2Q P;  1MD8 A;  3ZD2 A;  4C16 A;  1VVC A;  3KXV A;  4A5W B;  4K12 A;  2JGX A;  4WJG 2;  3RJ3 D;  1E5G A;  2XWB F;  1ZJK A;  2YRA A;  1GKG A;  1OJV A;  4J38 B;  1TPM A;  3KZJ A;  4IGD A;  2RKY A; 
#chains in the Genus database with same CATH topology
 3OED C;  1PPQ A;  2CG7 A;  1OK2 A;  2XRB A;  3K3T A;  4FXG G;  3WSX A;  1Q3X A;  1HFI A;  5HYT B;  2RL0 A;  1FBR A;  2XQW C;  1OJY A;  2IZ3 A;  3O8E B;  3TVJ A;  3EJH A;  3ZLD A;  1TPG A;  5HZP B;  1CKL A;  1GKN A;  2BZM A;  1OJW A;  1H2P P;  2Y8S A;  5DN4 A;  2MCY A;  2O39 C;  2YBY A;  1E88 A;  3FGT A;  2X2Z A;  4YNX A;  2XWJ I;  2ZYC A;  1H03 P;  2B5I D;  3OXU D;  1OK3 A;  4PO7 A;  3FGR A;  4B2R A;  2XRD A;  2Y8R A;  4ONT D;  3SW0 X;  1GPZ A;  1OK1 A;  1RLH A;  4AYD A;  3L89 M;  2EC3 A;  3OP8 A;  2RLQ A;  2A55 A;  5JPM G;  2CKU A;  3M7P A;  1NWV A;  3GXE A;  4APL A;  1H04 P;  2RKZ A;  4AYM A;  1O9A A;  1MD7 A;  4LOT A;  1Z92 B;  4BWC A;  4LOS A;  5HYP A;  1SRZ A;  1E8B A;  3IX0 A;  4F4O C;  2MCZ A;  2W81 A;  2ERJ A;  3ZD1 A;  3R62 A;  3ERB A;  3ZRZ A;  4ZH1 D;  3ZLE A;  1ELV A;  5I0Q B;  4MSL A;  4DJZ A;  2CG6 A;  2KMS A;  4B2S A;  4PZ5 A;  4N7E A;  4AYE A;  5FO8 C;  3CAL A;  2Y8T A;  1UOT P;  3WSY A;  2KRI A;  2IZ4 A;  1U5M A;  2V8E A;  1VVD A;  1TPN A;  5DN5 A;  1HCC A;  2LOJ A;  1G4F A;  1QO6 A;  1HFH A;  2QY0 A;  2RLP A;  3NFP I;  1OK9 A;  1QGB A;  1QUB A;  2JGW A;  2W80 A;  3INB C;  1SS2 A;  1GHQ B;  2UWN A;  1C1Z A;  2G7I A;  3CI0 J;  2WII C;  3F6K A;  3GOV A;  1G4G A;  3NJA A;  3IU3 I;  4AYI A;  1LY2 A;  3MQL A;  2EHF A;  4JHS A;  4KKD A;  2JRA A;  4MUC A;  4CSY A;  5HYU B;  3T5O A;  1H2Q P;  1MD8 A;  3VWO A;  3ZD2 A;  4C16 A;  1VVC A;  3KXV A;  4A5W B;  4K12 A;  2JGX A;  4WJG 2;  3RJ3 D;  2I2L A;  1E5G A;  2XWB F;  1ZJK A;  2YRA A;  1GKG A;  1OJV A;  4J38 B;  1TPM A;  3KZJ A;  4IGD A;  4YIZ A;  2RKY A; 
#chains in the Genus database with same CATH homology
 3OED C;  1PPQ A;  2CG7 A;  1OK2 A;  2XRB A;  4FXG G;  1Q3X A;  1HFI A;  5HYT B;  2RL0 A;  1FBR A;  2XQW C;  1OJY A;  2IZ3 A;  3O8E B;  3TVJ A;  3EJH A;  1TPG A;  5HZP B;  1CKL A;  1GKN A;  2BZM A;  1OJW A;  1H2P P;  2MCY A;  2O39 C;  2YBY A;  1E88 A;  4YNX A;  2XWJ I;  1H03 P;  2B5I D;  3OXU D;  1OK3 A;  4B2R A;  2XRD A;  4ONT D;  3SW0 X;  1GPZ A;  1OK1 A;  4AYD A;  3L89 M;  2EC3 A;  3OP8 A;  2RLQ A;  2A55 A;  5JPM G;  2CKU A;  3M7P A;  1NWV A;  3GXE A;  1H04 P;  2RKZ A;  4AYM A;  1O9A A;  1MD7 A;  4LOT A;  1Z92 B;  4LOS A;  5HYP A;  1SRZ A;  1E8B A;  3IX0 A;  4F4O C;  2MCZ A;  2W81 A;  2ERJ A;  3ZD1 A;  3R62 A;  3ERB A;  3ZRZ A;  4ZH1 D;  1ELV A;  5I0Q B;  4DJZ A;  2CG6 A;  2KMS A;  4B2S A;  4PZ5 A;  4AYE A;  5FO8 C;  3CAL A;  1UOT P;  2KRI A;  2IZ4 A;  1U5M A;  2V8E A;  1VVD A;  1TPN A;  1HCC A;  2LOJ A;  1G4F A;  1QO6 A;  1HFH A;  2QY0 A;  2RLP A;  3NFP I;  1OK9 A;  1QGB A;  1QUB A;  2JGW A;  2W80 A;  3INB C;  1SS2 A;  1GHQ B;  2UWN A;  1C1Z A;  2G7I A;  2WII C;  3GOV A;  1G4G A;  3IU3 I;  4AYI A;  1LY2 A;  3MQL A;  2EHF A;  4JHS A;  4KKD A;  2JRA A;  4MUC A;  4CSY A;  5HYU B;  3T5O A;  1H2Q P;  1MD8 A;  3ZD2 A;  4C16 A;  1VVC A;  3KXV A;  4A5W B;  4K12 A;  2JGX A;  4WJG 2;  3RJ3 D;  1E5G A;  2XWB F;  1ZJK A;  2YRA A;  1GKG A;  1OJV A;  4J38 B;  1TPM A;  3KZJ A;  4IGD A;  2RKY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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