5HYTB

Structure of human c4b-binidng protein alpha chain ccp domains 1 and 2 in complex with the hypervariable region of group a streptococcus m22 protein
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
124
structure length
124
Chain Sequence
NCGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVYNTFCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHPLPQCEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Precursor to Protein Sir22
publication title Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.
pubmed doi rcsb
source organism Streptococcus pyogenes
total genus 22
structure length 124
sequence length 124
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2016-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 5hytB02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 5hytB01
2QY0A 4C16A 2RL0A 1U5MA 5FO8C 3OEDC 2JRAA 2CG6A 4MUCA 2A55A 1MD8A 2XWJI 3OP8A 2CG7A 2JGXA 4F4OC 3SW0X 1OK3A 1C1ZA 3RJ3D 3CALA 2W80A 3NFPI 2JGWA 1H2PP 2IZ3A 1PPQA 1OK2A 1TPMA 2KRIA 1E88A 1OK1A 2XRBA 3INBC 2CKUA 3IX0A 1GKGA 4J38B 1HFIA 1GPZA 1FBRA 2UWNA 1O9AA 2EHFA 1OJVA 3ERBA 1OJWA 3MQLA 1ZJKA 2G7IA 2RKYA 4LOTA 1QGBA 2YRAA 2RLPA 2RKZA 1H2QP 4A5WB 1MD7A 1H04P 4ZH1D 5HYUB 1Q3XA 4K12A 2MCYA 1OJYA 2IZ4A 1QUBA 2W81A 1NWVA 4PZ5A 2BZMA 1VVCA 4DJZA 4FXGG 1UOTP 3TVJA 4B2SA 2V8EA 2RLQA 1E8BA 3T5OA 2B5ID 2KMSA 3EJHA 1QO6A 1SRZA 4LOSA 4AYIA 1G4GA 1TPNA 4YNXA 4ONTD 1ELVA 3ZRZA 4CSYA 2YBYA 4KKDA 1G4FA 3OXUD 3GOVA 3M7PA 5HZPB 3IU3I 1HCCA 2XWBF 1VVDA 2EC3A 1H03P 1HFHA 3R62A 2XQWC 4AYEA 1SS2A 1Z92B 1TPGA 2WIIC 3ZD2A 4B2RA 1GHQB 4AYDA 4IGDA 3ZD1A 5JPMG 2MCZA 5I0QB 4AYMA 2XRDA 1LY2A 1GKNA 2ERJA 2O39C 3KZJA 3GXEA 3O8EB 1CKLA 1OK9A 2LOJA 5HYPA 4JHSA 3L89M 4WJG2 3KXVA 5HYTB 1E5GA
chains in the Genus database with same CATH superfamily
2QY0A 2Y8TA 4C16A 2RL0A 1U5MA 5FO8C 3ZLEA 3OEDC 2JRAA 2CG6A 4MUCA 2A55A 1RLHA 1MD8A 2XWJI 3OP8A 2X2ZA 2CG7A 2JGXA 3VWOA 4F4OC 3SW0X 1OK3A 1C1ZA 3RJ3D 3CALA 2W80A 3NFPI 2JGWA 1H2PP 2IZ3A 3ZLDA 1PPQA 1OK2A 1TPMA 2KRIA 1E88A 1OK1A 2XRBA 3INBC 2CKUA 3IX0A 1GKGA 4J38B 1HFIA 1GPZA 3WSXA 1FBRA 2UWNA 1O9AA 2EHFA 1OJVA 3ERBA 1OJWA 3MQLA 1ZJKA 2G7IA 2RKYA 4LOTA 1QGBA 2YRAA 3CI0J 2ZYCA 2Y8RA 2RLPA 2RKZA 1H2QP 4A5WB 3F6KA 4BWCA 1MD7A 1H04P 4MSLA 4ZH1D 2Y8SA 5HYUB 1Q3XA 2I2LA 2MCYA 4K12A 1OJYA 2IZ4A 1QUBA 2W81A 4PO7A 1NWVA 4PZ5A 2BZMA 1VVCA 4DJZA 4FXGG 1UOTP 3TVJA 4B2SA 2V8EA 2RLQA 1E8BA 3T5OA 2B5ID 2KMSA 3EJHA 1QO6A 1SRZA 4LOSA 4AYIA 1G4GA 1TPNA 4YNXA 4ONTD 1ELVA 3ZRZA 4CSYA 2YBYA 4KKDA 4N7EA 1G4FA 3OXUD 3GOVA 3M7PA 5HZPB 5DN5A 3IU3I 1HCCA 2XWBF 3NJAA 1VVDA 2EC3A 1H03P 1HFHA 3K3TA 3WSYA 3R62A 2XQWC 4AYEA 1SS2A 1Z92B 1TPGA 2WIIC 3ZD2A 4B2RA 1GHQB 4AYDA 4IGDA 3ZD1A 5JPMG 4YIZA 2MCZA 3FGRA 5I0QB 4AYMA 2XRDA 1LY2A 1GKNA 2ERJA 2O39C 5DN4A 3KZJA 3GXEA 3O8EB 1CKLA 1OK9A 2LOJA 5HYPA 4JHSA 4APLA 3L89M 4WJG2 3KXVA 5HYTB 3FGTA 1E5GA
chains in the Genus database with same CATH topology
2QY0A 4C16A 2RL0A 1U5MA 5FO8C 3OEDC 2JRAA 2CG6A 4MUCA 2A55A 1MD8A 2XWJI 3OP8A 2CG7A 2JGXA 4F4OC 3SW0X 1OK3A 1C1ZA 3RJ3D 3CALA 2W80A 3NFPI 2JGWA 1H2PP 2IZ3A 1PPQA 1OK2A 1TPMA 2KRIA 1E88A 1OK1A 2XRBA 3INBC 2CKUA 3IX0A 1GKGA 4J38B 1HFIA 1GPZA 1FBRA 2UWNA 1O9AA 2EHFA 1OJVA 3ERBA 1OJWA 3MQLA 1ZJKA 2G7IA 2RKYA 4LOTA 1QGBA 2YRAA 2RLPA 2RKZA 1H2QP 4A5WB 1MD7A 1H04P 4ZH1D 5HYUB 1Q3XA 4K12A 2MCYA 1OJYA 2IZ4A 1QUBA 2W81A 1NWVA 4PZ5A 2BZMA 1VVCA 4DJZA 4FXGG 1UOTP 3TVJA 4B2SA 2V8EA 2RLQA 1E8BA 3T5OA 2B5ID 2KMSA 3EJHA 1QO6A 1SRZA 4LOSA 4AYIA 1G4GA 1TPNA 4YNXA 4ONTD 1ELVA 3ZRZA 4CSYA 2YBYA 4KKDA 1G4FA 3OXUD 3GOVA 3M7PA 5HZPB 3IU3I 1HCCA 2XWBF 1VVDA 2EC3A 1H03P 1HFHA 3R62A 2XQWC 4AYEA 1SS2A 1Z92B 1TPGA 2WIIC 3ZD2A 4B2RA 1GHQB 4AYDA 4IGDA 3ZD1A 5JPMG 2MCZA 5I0QB 4AYMA 2XRDA 1LY2A 1GKNA 2ERJA 2O39C 3KZJA 3GXEA 3O8EB 1CKLA 1OK9A 2LOJA 5HYPA 4JHSA 3L89M 4WJG2 3KXVA 5HYTB 1E5GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QY0 A;  4C16 A;  2RL0 A;  1U5M A;  5FO8 C;  3OED C;  2JRA A;  2CG6 A;  4MUC A;  2A55 A;  1MD8 A;  2XWJ I;  3OP8 A;  2CG7 A;  2JGX A;  4F4O C;  3SW0 X;  1OK3 A;  1C1Z A;  3RJ3 D;  3CAL A;  2W80 A;  3NFP I;  2JGW A;  1H2P P;  2IZ3 A;  1PPQ A;  1OK2 A;  1TPM A;  2KRI A;  1E88 A;  1OK1 A;  2XRB A;  3INB C;  2CKU A;  3IX0 A;  1GKG A;  4J38 B;  1HFI A;  1GPZ A;  1FBR A;  2UWN A;  1O9A A;  2EHF A;  1OJV A;  3ERB A;  1OJW A;  3MQL A;  1ZJK A;  2G7I A;  2RKY A;  4LOT A;  1QGB A;  2YRA A;  2RLP A;  2RKZ A;  1H2Q P;  4A5W B;  1MD7 A;  1H04 P;  4ZH1 D;  5HYU B;  1Q3X A;  4K12 A;  2MCY A;  1OJY A;  2IZ4 A;  1QUB A;  2W81 A;  1NWV A;  4PZ5 A;  2BZM A;  1VVC A;  4DJZ A;  4FXG G;  1UOT P;  3TVJ A;  4B2S A;  2V8E A;  2RLQ A;  1E8B A;  3T5O A;  2B5I D;  2KMS A;  3EJH A;  1QO6 A;  1SRZ A;  4LOS A;  4AYI A;  1G4G A;  1TPN A;  4YNX A;  4ONT D;  1ELV A;  3ZRZ A;  4CSY A;  2YBY A;  4KKD A;  1G4F A;  3OXU D;  3GOV A;  3M7P A;  5HZP B;  3IU3 I;  1HCC A;  2XWB F;  1VVD A;  2EC3 A;  1H03 P;  1HFH A;  3R62 A;  2XQW C;  4AYE A;  1SS2 A;  1Z92 B;  1TPG A;  2WII C;  3ZD2 A;  4B2R A;  1GHQ B;  4AYD A;  4IGD A;  3ZD1 A;  5JPM G;  2MCZ A;  5I0Q B;  4AYM A;  2XRD A;  1LY2 A;  1GKN A;  2ERJ A;  2O39 C;  3KZJ A;  3GXE A;  3O8E B;  1CKL A;  1OK9 A;  2LOJ A;  5HYP A;  4JHS A;  3L89 M;  4WJG 2;  3KXV A;  5HYT B;  1E5G A; 
#chains in the Genus database with same CATH topology
 2QY0 A;  2Y8T A;  4C16 A;  2RL0 A;  1U5M A;  5FO8 C;  3ZLE A;  3OED C;  2JRA A;  2CG6 A;  4MUC A;  2A55 A;  1RLH A;  1MD8 A;  2XWJ I;  3OP8 A;  2X2Z A;  2CG7 A;  2JGX A;  3VWO A;  4F4O C;  3SW0 X;  1OK3 A;  1C1Z A;  3RJ3 D;  3CAL A;  2W80 A;  3NFP I;  2JGW A;  1H2P P;  2IZ3 A;  3ZLD A;  1PPQ A;  1OK2 A;  1TPM A;  2KRI A;  1E88 A;  1OK1 A;  2XRB A;  3INB C;  2CKU A;  3IX0 A;  1GKG A;  4J38 B;  1HFI A;  1GPZ A;  3WSX A;  1FBR A;  2UWN A;  1O9A A;  2EHF A;  1OJV A;  3ERB A;  1OJW A;  3MQL A;  1ZJK A;  2G7I A;  2RKY A;  4LOT A;  1QGB A;  2YRA A;  3CI0 J;  2ZYC A;  2Y8R A;  2RLP A;  2RKZ A;  1H2Q P;  4A5W B;  3F6K A;  4BWC A;  1MD7 A;  1H04 P;  4MSL A;  4ZH1 D;  2Y8S A;  5HYU B;  1Q3X A;  2I2L A;  2MCY A;  4K12 A;  1OJY A;  2IZ4 A;  1QUB A;  2W81 A;  4PO7 A;  1NWV A;  4PZ5 A;  2BZM A;  1VVC A;  4DJZ A;  4FXG G;  1UOT P;  3TVJ A;  4B2S A;  2V8E A;  2RLQ A;  1E8B A;  3T5O A;  2B5I D;  2KMS A;  3EJH A;  1QO6 A;  1SRZ A;  4LOS A;  4AYI A;  1G4G A;  1TPN A;  4YNX A;  4ONT D;  1ELV A;  3ZRZ A;  4CSY A;  2YBY A;  4KKD A;  4N7E A;  1G4F A;  3OXU D;  3GOV A;  3M7P A;  5HZP B;  5DN5 A;  3IU3 I;  1HCC A;  2XWB F;  3NJA A;  1VVD A;  2EC3 A;  1H03 P;  1HFH A;  3K3T A;  3WSY A;  3R62 A;  2XQW C;  4AYE A;  1SS2 A;  1Z92 B;  1TPG A;  2WII C;  3ZD2 A;  4B2R A;  1GHQ B;  4AYD A;  4IGD A;  3ZD1 A;  5JPM G;  4YIZ A;  2MCZ A;  3FGR A;  5I0Q B;  4AYM A;  2XRD A;  1LY2 A;  1GKN A;  2ERJ A;  2O39 C;  5DN4 A;  3KZJ A;  3GXE A;  3O8E B;  1CKL A;  1OK9 A;  2LOJ A;  5HYP A;  4JHS A;  4APL A;  3L89 M;  4WJG 2;  3KXV A;  5HYT B;  3FGT A;  1E5G A; 
#chains in the Genus database with same CATH homology
 2QY0 A;  4C16 A;  2RL0 A;  1U5M A;  5FO8 C;  3OED C;  2JRA A;  2CG6 A;  4MUC A;  2A55 A;  1MD8 A;  2XWJ I;  3OP8 A;  2CG7 A;  2JGX A;  4F4O C;  3SW0 X;  1OK3 A;  1C1Z A;  3RJ3 D;  3CAL A;  2W80 A;  3NFP I;  2JGW A;  1H2P P;  2IZ3 A;  1PPQ A;  1OK2 A;  1TPM A;  2KRI A;  1E88 A;  1OK1 A;  2XRB A;  3INB C;  2CKU A;  3IX0 A;  1GKG A;  4J38 B;  1HFI A;  1GPZ A;  1FBR A;  2UWN A;  1O9A A;  2EHF A;  1OJV A;  3ERB A;  1OJW A;  3MQL A;  1ZJK A;  2G7I A;  2RKY A;  4LOT A;  1QGB A;  2YRA A;  2RLP A;  2RKZ A;  1H2Q P;  4A5W B;  1MD7 A;  1H04 P;  4ZH1 D;  5HYU B;  1Q3X A;  4K12 A;  2MCY A;  1OJY A;  2IZ4 A;  1QUB A;  2W81 A;  1NWV A;  4PZ5 A;  2BZM A;  1VVC A;  4DJZ A;  4FXG G;  1UOT P;  3TVJ A;  4B2S A;  2V8E A;  2RLQ A;  1E8B A;  3T5O A;  2B5I D;  2KMS A;  3EJH A;  1QO6 A;  1SRZ A;  4LOS A;  4AYI A;  1G4G A;  1TPN A;  4YNX A;  4ONT D;  1ELV A;  3ZRZ A;  4CSY A;  2YBY A;  4KKD A;  1G4F A;  3OXU D;  3GOV A;  3M7P A;  5HZP B;  3IU3 I;  1HCC A;  2XWB F;  1VVD A;  2EC3 A;  1H03 P;  1HFH A;  3R62 A;  2XQW C;  4AYE A;  1SS2 A;  1Z92 B;  1TPG A;  2WII C;  3ZD2 A;  4B2R A;  1GHQ B;  4AYD A;  4IGD A;  3ZD1 A;  5JPM G;  2MCZ A;  5I0Q B;  4AYM A;  2XRD A;  1LY2 A;  1GKN A;  2ERJ A;  2O39 C;  3KZJ A;  3GXE A;  3O8E B;  1CKL A;  1OK9 A;  2LOJ A;  5HYP A;  4JHS A;  3L89 M;  4WJG 2;  3KXV A;  5HYT B;  1E5G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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