5HZPB

Structure of human c4b-binding protein alpha chain ccp domains 1 and 2 in complex with the hypervariable region of group a streptococcus m49 protein.
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
125
structure length
125
Chain Sequence
SNCGPPPTLSFAAPMDITLTETRFKTGTTMKYTCLPGYVRSHSTQTMTCNSDGEWVYNTFCIYKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHPLPQCEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords M protein, serotype 49
publication title Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.
pubmed doi rcsb
source organism Streptococcus pyogenes serotype m49
total genus 18
structure length 125
sequence length 125
chains with identical sequence D
ec nomenclature
pdb deposition date 2016-02-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 5hzpB02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 5hzpB01
2XWBF 1E8BA 4AYEA 1OJVA 5HYPA 3OEDC 3ZD1A 4JHSA 1Q3XA 1E88A 2MCZA 3ZD2A 2O39C 1GHQB 2B5ID 2QY0A 4K12A 1G4FA 1U5MA 1GKNA 3T5OA 3KXVA 2XWJI 1H2PP 2XQWC 4PZ5A 4KKDA 1H04P 4MUCA 2EHFA 4YNXA 1NWVA 1Z92B 3MQLA 1OK3A 3O8EB 1E5GA 2A55A 2XRBA 3ZRZA 2RLPA 3OP8A 2KRIA 2RL0A 3ERBA 4DJZA 1QGBA 3GOVA 1GPZA 1H03P 1O9AA 1MD8A 1VVDA 3NFPI 3IX0A 2EC3A 4F4OC 4CSYA 1SS2A 4LOTA 1HCCA 4LOSA 3CALA 1UOTP 5HZPB 1QUBA 1ZJKA 3M7PA 5I0QB 1TPGA 4ZH1D 2LOJA 3OXUD 2JGXA 2RKYA 4AYDA 2YRAA 2RKZA 4B2SA 1OK1A 3L89M 4J38B 3RJ3D 1MD7A 2V8EA 2CKUA 4WJG2 2UWNA 4AYMA 1OK2A 2JGWA 2JRAA 2YBYA 4C16A 2W81A 1GKGA 2ERJA 1ELVA 2RLQA 1C1ZA 3EJHA 1OJYA 1CKLA 3GXEA 2G7IA 5JPMG 5HYTB 1OK9A 1FBRA 1G4GA 2BZMA 1OJWA 3TVJA 3IU3I 1VVCA 2CG6A 4B2RA 2KMSA 1QO6A 2IZ4A 4ONTD 1TPMA 4AYIA 3R62A 4A5WB 2IZ3A 4FXGG 4IGDA 2MCYA 3INBC 2CG7A 2WIIC 2XRDA 2W80A 1HFIA 5FO8C 1PPQA 1SRZA 1TPNA 3SW0X 1HFHA 1LY2A 1H2QP 3KZJA 5HYUB
chains in the Genus database with same CATH superfamily
2XWBF 1E8BA 4AYEA 1OJVA 5HYPA 3OEDC 3ZD1A 4JHSA 3WSXA 1Q3XA 4BWCA 1E88A 2ZYCA 2MCZA 3ZD2A 2O39C 1GHQB 2B5ID 2QY0A 2X2ZA 4K12A 1U5MA 1G4FA 1GKNA 3T5OA 3KXVA 2XWJI 1H2PP 2XQWC 5DN4A 4PZ5A 4KKDA 1H04P 4MUCA 2EHFA 4YNXA 1NWVA 1Z92B 3MQLA 4N7EA 1OK3A 3O8EB 3ZLDA 1E5GA 2A55A 2XRBA 3ZRZA 3F6KA 2RLPA 3OP8A 2KRIA 2RL0A 3ERBA 4DJZA 4APLA 1QGBA 3GOVA 1GPZA 1H03P 1O9AA 1MD8A 1VVDA 3NFPI 3IX0A 2EC3A 4YIZA 4F4OC 4CSYA 1SS2A 4LOTA 1HCCA 4LOSA 3CALA 1UOTP 3WSYA 5HZPB 1QUBA 1ZJKA 3M7PA 5I0QB 1TPGA 4ZH1D 2LOJA 4PO7A 3OXUD 2JGXA 2Y8SA 2RKYA 4AYDA 2YRAA 2RKZA 3NJAA 4B2SA 3K3TA 1OK1A 3L89M 3FGRA 3ZLEA 2Y8RA 4J38B 2I2LA 1MD7A 2V8EA 2CKUA 4WJG2 3RJ3D 2UWNA 4AYMA 1OK2A 2JGWA 2JRAA 2YBYA 4C16A 2W81A 1GKGA 2ERJA 1ELVA 3CI0J 2RLQA 1C1ZA 3VWOA 3EJHA 1OJYA 1CKLA 3GXEA 2G7IA 5JPMG 5HYTB 1OK9A 1FBRA 1G4GA 2BZMA 1OJWA 3TVJA 3IU3I 1VVCA 2CG6A 4MSLA 4B2RA 2KMSA 2Y8TA 1QO6A 2IZ4A 4ONTD 1RLHA 1TPMA 4AYIA 3R62A 4A5WB 2IZ3A 4FXGG 4IGDA 2MCYA 3INBC 2CG7A 2WIIC 2XRDA 2W80A 1HFIA 5FO8C 5DN5A 1PPQA 3FGTA 1SRZA 1TPNA 3SW0X 1HFHA 1LY2A 1H2QP 3KZJA 5HYUB
chains in the Genus database with same CATH topology
2XWBF 1E8BA 4AYEA 1OJVA 5HYPA 3OEDC 3ZD1A 4JHSA 1Q3XA 1E88A 2MCZA 3ZD2A 2O39C 1GHQB 2B5ID 2QY0A 4K12A 1G4FA 1U5MA 1GKNA 3T5OA 3KXVA 2XWJI 1H2PP 2XQWC 4PZ5A 4KKDA 1H04P 4MUCA 2EHFA 4YNXA 1NWVA 1Z92B 3MQLA 1OK3A 3O8EB 1E5GA 2A55A 2XRBA 3ZRZA 2RLPA 3OP8A 2KRIA 2RL0A 3ERBA 4DJZA 1QGBA 3GOVA 1GPZA 1H03P 1O9AA 1MD8A 1VVDA 3NFPI 3IX0A 2EC3A 4F4OC 4CSYA 1SS2A 4LOTA 1HCCA 4LOSA 3CALA 1UOTP 5HZPB 1QUBA 1ZJKA 3M7PA 5I0QB 1TPGA 4ZH1D 2LOJA 3OXUD 2JGXA 2RKYA 4AYDA 2YRAA 2RKZA 4B2SA 1OK1A 3L89M 4J38B 3RJ3D 1MD7A 2V8EA 2CKUA 4WJG2 2UWNA 4AYMA 1OK2A 2JGWA 2JRAA 2YBYA 4C16A 2W81A 1GKGA 2ERJA 1ELVA 2RLQA 1C1ZA 3EJHA 1OJYA 1CKLA 3GXEA 2G7IA 5JPMG 5HYTB 1OK9A 1FBRA 1G4GA 2BZMA 1OJWA 3TVJA 3IU3I 1VVCA 2CG6A 4B2RA 2KMSA 1QO6A 2IZ4A 4ONTD 1TPMA 4AYIA 3R62A 4A5WB 2IZ3A 4FXGG 4IGDA 2MCYA 3INBC 2CG7A 2WIIC 2XRDA 2W80A 1HFIA 5FO8C 1PPQA 1SRZA 1TPNA 3SW0X 1HFHA 1LY2A 1H2QP 3KZJA 5HYUB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XWB F;  1E8B A;  4AYE A;  1OJV A;  5HYP A;  3OED C;  3ZD1 A;  4JHS A;  1Q3X A;  1E88 A;  2MCZ A;  3ZD2 A;  2O39 C;  1GHQ B;  2B5I D;  2QY0 A;  4K12 A;  1G4F A;  1U5M A;  1GKN A;  3T5O A;  3KXV A;  2XWJ I;  1H2P P;  2XQW C;  4PZ5 A;  4KKD A;  1H04 P;  4MUC A;  2EHF A;  4YNX A;  1NWV A;  1Z92 B;  3MQL A;  1OK3 A;  3O8E B;  1E5G A;  2A55 A;  2XRB A;  3ZRZ A;  2RLP A;  3OP8 A;  2KRI A;  2RL0 A;  3ERB A;  4DJZ A;  1QGB A;  3GOV A;  1GPZ A;  1H03 P;  1O9A A;  1MD8 A;  1VVD A;  3NFP I;  3IX0 A;  2EC3 A;  4F4O C;  4CSY A;  1SS2 A;  4LOT A;  1HCC A;  4LOS A;  3CAL A;  1UOT P;  5HZP B;  1QUB A;  1ZJK A;  3M7P A;  5I0Q B;  1TPG A;  4ZH1 D;  2LOJ A;  3OXU D;  2JGX A;  2RKY A;  4AYD A;  2YRA A;  2RKZ A;  4B2S A;  1OK1 A;  3L89 M;  4J38 B;  3RJ3 D;  1MD7 A;  2V8E A;  2CKU A;  4WJG 2;  2UWN A;  4AYM A;  1OK2 A;  2JGW A;  2JRA A;  2YBY A;  4C16 A;  2W81 A;  1GKG A;  2ERJ A;  1ELV A;  2RLQ A;  1C1Z A;  3EJH A;  1OJY A;  1CKL A;  3GXE A;  2G7I A;  5JPM G;  5HYT B;  1OK9 A;  1FBR A;  1G4G A;  2BZM A;  1OJW A;  3TVJ A;  3IU3 I;  1VVC A;  2CG6 A;  4B2R A;  2KMS A;  1QO6 A;  2IZ4 A;  4ONT D;  1TPM A;  4AYI A;  3R62 A;  4A5W B;  2IZ3 A;  4FXG G;  4IGD A;  2MCY A;  3INB C;  2CG7 A;  2WII C;  2XRD A;  2W80 A;  1HFI A;  5FO8 C;  1PPQ A;  1SRZ A;  1TPN A;  3SW0 X;  1HFH A;  1LY2 A;  1H2Q P;  3KZJ A;  5HYU B; 
#chains in the Genus database with same CATH topology
 2XWB F;  1E8B A;  4AYE A;  1OJV A;  5HYP A;  3OED C;  3ZD1 A;  4JHS A;  3WSX A;  1Q3X A;  4BWC A;  1E88 A;  2ZYC A;  2MCZ A;  3ZD2 A;  2O39 C;  1GHQ B;  2B5I D;  2QY0 A;  2X2Z A;  4K12 A;  1U5M A;  1G4F A;  1GKN A;  3T5O A;  3KXV A;  2XWJ I;  1H2P P;  2XQW C;  5DN4 A;  4PZ5 A;  4KKD A;  1H04 P;  4MUC A;  2EHF A;  4YNX A;  1NWV A;  1Z92 B;  3MQL A;  4N7E A;  1OK3 A;  3O8E B;  3ZLD A;  1E5G A;  2A55 A;  2XRB A;  3ZRZ A;  3F6K A;  2RLP A;  3OP8 A;  2KRI A;  2RL0 A;  3ERB A;  4DJZ A;  4APL A;  1QGB A;  3GOV A;  1GPZ A;  1H03 P;  1O9A A;  1MD8 A;  1VVD A;  3NFP I;  3IX0 A;  2EC3 A;  4YIZ A;  4F4O C;  4CSY A;  1SS2 A;  4LOT A;  1HCC A;  4LOS A;  3CAL A;  1UOT P;  3WSY A;  5HZP B;  1QUB A;  1ZJK A;  3M7P A;  5I0Q B;  1TPG A;  4ZH1 D;  2LOJ A;  4PO7 A;  3OXU D;  2JGX A;  2Y8S A;  2RKY A;  4AYD A;  2YRA A;  2RKZ A;  3NJA A;  4B2S A;  3K3T A;  1OK1 A;  3L89 M;  3FGR A;  3ZLE A;  2Y8R A;  4J38 B;  2I2L A;  1MD7 A;  2V8E A;  2CKU A;  4WJG 2;  3RJ3 D;  2UWN A;  4AYM A;  1OK2 A;  2JGW A;  2JRA A;  2YBY A;  4C16 A;  2W81 A;  1GKG A;  2ERJ A;  1ELV A;  3CI0 J;  2RLQ A;  1C1Z A;  3VWO A;  3EJH A;  1OJY A;  1CKL A;  3GXE A;  2G7I A;  5JPM G;  5HYT B;  1OK9 A;  1FBR A;  1G4G A;  2BZM A;  1OJW A;  3TVJ A;  3IU3 I;  1VVC A;  2CG6 A;  4MSL A;  4B2R A;  2KMS A;  2Y8T A;  1QO6 A;  2IZ4 A;  4ONT D;  1RLH A;  1TPM A;  4AYI A;  3R62 A;  4A5W B;  2IZ3 A;  4FXG G;  4IGD A;  2MCY A;  3INB C;  2CG7 A;  2WII C;  2XRD A;  2W80 A;  1HFI A;  5FO8 C;  5DN5 A;  1PPQ A;  3FGT A;  1SRZ A;  1TPN A;  3SW0 X;  1HFH A;  1LY2 A;  1H2Q P;  3KZJ A;  5HYU B; 
#chains in the Genus database with same CATH homology
 2XWB F;  1E8B A;  4AYE A;  1OJV A;  5HYP A;  3OED C;  3ZD1 A;  4JHS A;  1Q3X A;  1E88 A;  2MCZ A;  3ZD2 A;  2O39 C;  1GHQ B;  2B5I D;  2QY0 A;  4K12 A;  1G4F A;  1U5M A;  1GKN A;  3T5O A;  3KXV A;  2XWJ I;  1H2P P;  2XQW C;  4PZ5 A;  4KKD A;  1H04 P;  4MUC A;  2EHF A;  4YNX A;  1NWV A;  1Z92 B;  3MQL A;  1OK3 A;  3O8E B;  1E5G A;  2A55 A;  2XRB A;  3ZRZ A;  2RLP A;  3OP8 A;  2KRI A;  2RL0 A;  3ERB A;  4DJZ A;  1QGB A;  3GOV A;  1GPZ A;  1H03 P;  1O9A A;  1MD8 A;  1VVD A;  3NFP I;  3IX0 A;  2EC3 A;  4F4O C;  4CSY A;  1SS2 A;  4LOT A;  1HCC A;  4LOS A;  3CAL A;  1UOT P;  5HZP B;  1QUB A;  1ZJK A;  3M7P A;  5I0Q B;  1TPG A;  4ZH1 D;  2LOJ A;  3OXU D;  2JGX A;  2RKY A;  4AYD A;  2YRA A;  2RKZ A;  4B2S A;  1OK1 A;  3L89 M;  4J38 B;  3RJ3 D;  1MD7 A;  2V8E A;  2CKU A;  4WJG 2;  2UWN A;  4AYM A;  1OK2 A;  2JGW A;  2JRA A;  2YBY A;  4C16 A;  2W81 A;  1GKG A;  2ERJ A;  1ELV A;  2RLQ A;  1C1Z A;  3EJH A;  1OJY A;  1CKL A;  3GXE A;  2G7I A;  5JPM G;  5HYT B;  1OK9 A;  1FBR A;  1G4G A;  2BZM A;  1OJW A;  3TVJ A;  3IU3 I;  1VVC A;  2CG6 A;  4B2R A;  2KMS A;  1QO6 A;  2IZ4 A;  4ONT D;  1TPM A;  4AYI A;  3R62 A;  4A5W B;  2IZ3 A;  4FXG G;  4IGD A;  2MCY A;  3INB C;  2CG7 A;  2WII C;  2XRD A;  2W80 A;  1HFI A;  5FO8 C;  1PPQ A;  1SRZ A;  1TPN A;  3SW0 X;  1HFH A;  1LY2 A;  1H2Q P;  3KZJ A;  5HYU B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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