5I38A

Crystal structure of tyrosinase from bacillus megaterium with inhibitor kojic acid in the active site
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
286
structure length
286
Chain Sequence
YRVRKNVLHLTDTEKRDFVRTVLILKEKGIYDRYIAWHGAAGKFHTPPGSDRNAAHMSSAFLPWHREYLLRFERDLQSINPEVTLPYWEWETDAQMQDPSQSQIWSADFMGGNGNPIKDFIVDTGPFAAGRWTTIDEQGNPSGGLKRNFGATKEAPTLPTRDDVLNALKITQYDTPPWDMTSQNSFRNQLEGFINGPQLHNRVHRWVGGQMGVVPTAPNDPVFFLHHANVDRIWAVWQIIHRNQNYQPMKNGPFGQNFRDPMYPWNTTPEDVMNHRKLGYVYDIEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Tyrosinase
publication title The unravelling of the complex pattern of tyrosinase inhibition.
pubmed doi rcsb
source organism Bacillus megaterium
total genus 103
structure length 286
sequence length 286
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00264 Tyrosinase Common central domain of tyrosinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1280.10 Mainly Alpha Orthogonal Bundle di-copper center containing domain from catechol oxidase Di-copper center containing domain from catechol oxidase 5i38A00
2AHKA 2ZWEA 3AWTA 1BT2A 3WJMB 3HHSA 5I38A 1WXCA 4J3QA 3NQ5A 3WKYA 4P6RA 2P3XA 3GWJA 3AWXA 5CE9A 4J6VA 4J6TA 3AWUA 2Y9XA 4Z10A 4L37A 1HCYA 3QJOA 3AWZA 3NQ1A 1BT3A 2ZWFA 3AWYA 3HHSB 2Y9WA 1BUGA 4J3PA 4YZWA 1LNLA 1WX4A 4Z0ZA 3AWWA 4OUAA 3NTMA 2AHLA 4P6TA 1WX2A 2ZMXA 2ZMZA 4L37B 3W6QA 4HD4A 3W6WA 4HD7A 4P6SA 2ZMYA 1NOLA 5I3BA 4J3RA 3AX0A 4HD6A 1WX5A 4OUAB 4J6UA 4D87A 3WJMA 1OXYA 1LL1A 3NM8A 1HC1A 3NPYA 4Z0YA 5I3AA 2ZWDA 2ZWGA 3AWSA 3NQ0A 1LLAA 3AWVA 1BT1A 1JS8A
chains in the Genus database with same CATH superfamily
2AHKA 2ZWEA 3AWTA 1BT2A 3WJMB 3HHSA 5I38A 1WXCA 4J3QA 3NQ5A 3WKYA 4P6RA 2P3XA 3GWJA 3AWXA 5CE9A 4J6VA 4J6TA 3AWUA 2Y9XA 4Z10A 4L37A 1HCYA 3QJOA 3AWZA 3NQ1A 1BT3A 2ZWFA 3AWYA 3HHSB 2Y9WA 1BUGA 4J3PA 4YZWA 1LNLA 1WX4A 4Z0ZA 3AWWA 4OUAA 3NTMA 2AHLA 4P6TA 1WX2A 2ZMXA 2ZMZA 4L37B 3W6QA 4HD4A 3W6WA 4HD7A 4P6SA 2ZMYA 1NOLA 5I3BA 4J3RA 3AX0A 4HD6A 1WX5A 4OUAB 4J6UA 4D87A 3WJMA 1OXYA 1LL1A 3NM8A 1HC1A 3NPYA 4Z0YA 5I3AA 2ZWDA 2ZWGA 3AWSA 3NQ0A 1LLAA 3AWVA 1BT1A 1JS8A
chains in the Genus database with same CATH topology
2AHKA 2ZWEA 3AWTA 1BT2A 3WJMB 3HHSA 5I38A 1WXCA 4J3QA 3NQ5A 3WKYA 4P6RA 2P3XA 3GWJA 3AWXA 5CE9A 4J6VA 4J6TA 3AWUA 2Y9XA 4Z10A 4L37A 1HCYA 3QJOA 3AWZA 3NQ1A 1BT3A 2ZWFA 3AWYA 3HHSB 2Y9WA 1BUGA 4J3PA 4YZWA 1LNLA 1WX4A 4Z0ZA 3AWWA 4OUAA 3NTMA 2AHLA 4P6TA 1WX2A 2ZMXA 2ZMZA 4L37B 3W6QA 4HD4A 3W6WA 4HD7A 4P6SA 2ZMYA 1NOLA 5I3BA 4J3RA 3AX0A 4HD6A 1WX5A 4OUAB 4J6UA 4D87A 3WJMA 1OXYA 1LL1A 3NM8A 1HC1A 3NPYA 4Z0YA 5I3AA 2ZWDA 2ZWGA 3AWSA 3NQ0A 1LLAA 3AWVA 1BT1A 1JS8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AHK A;  2ZWE A;  3AWT A;  1BT2 A;  3WJM B;  3HHS A;  5I38 A;  1WXC A;  4J3Q A;  3NQ5 A;  3WKY A;  4P6R A;  2P3X A;  3GWJ A;  3AWX A;  5CE9 A;  4J6V A;  4J6T A;  3AWU A;  2Y9X A;  4Z10 A;  4L37 A;  1HCY A;  3QJO A;  3AWZ A;  3NQ1 A;  1BT3 A;  2ZWF A;  3AWY A;  3HHS B;  2Y9W A;  1BUG A;  4J3P A;  4YZW A;  1LNL A;  1WX4 A;  4Z0Z A;  3AWW A;  4OUA A;  3NTM A;  2AHL A;  4P6T A;  1WX2 A;  2ZMX A;  2ZMZ A;  4L37 B;  3W6Q A;  4HD4 A;  3W6W A;  4HD7 A;  4P6S A;  2ZMY A;  1NOL A;  5I3B A;  4J3R A;  3AX0 A;  4HD6 A;  1WX5 A;  4OUA B;  4J6U A;  4D87 A;  3WJM A;  1OXY A;  1LL1 A;  3NM8 A;  1HC1 A;  3NPY A;  4Z0Y A;  5I3A A;  2ZWD A;  2ZWG A;  3AWS A;  3NQ0 A;  1LLA A;  3AWV A;  1BT1 A;  1JS8 A; 
#chains in the Genus database with same CATH topology
 2AHK A;  2ZWE A;  3AWT A;  1BT2 A;  3WJM B;  3HHS A;  5I38 A;  1WXC A;  4J3Q A;  3NQ5 A;  3WKY A;  4P6R A;  2P3X A;  3GWJ A;  3AWX A;  5CE9 A;  4J6V A;  4J6T A;  3AWU A;  2Y9X A;  4Z10 A;  4L37 A;  1HCY A;  3QJO A;  3AWZ A;  3NQ1 A;  1BT3 A;  2ZWF A;  3AWY A;  3HHS B;  2Y9W A;  1BUG A;  4J3P A;  4YZW A;  1LNL A;  1WX4 A;  4Z0Z A;  3AWW A;  4OUA A;  3NTM A;  2AHL A;  4P6T A;  1WX2 A;  2ZMX A;  2ZMZ A;  4L37 B;  3W6Q A;  4HD4 A;  3W6W A;  4HD7 A;  4P6S A;  2ZMY A;  1NOL A;  5I3B A;  4J3R A;  3AX0 A;  4HD6 A;  1WX5 A;  4OUA B;  4J6U A;  4D87 A;  3WJM A;  1OXY A;  1LL1 A;  3NM8 A;  1HC1 A;  3NPY A;  4Z0Y A;  5I3A A;  2ZWD A;  2ZWG A;  3AWS A;  3NQ0 A;  1LLA A;  3AWV A;  1BT1 A;  1JS8 A; 
#chains in the Genus database with same CATH homology
 2AHK A;  2ZWE A;  3AWT A;  1BT2 A;  3WJM B;  3HHS A;  5I38 A;  1WXC A;  4J3Q A;  3NQ5 A;  3WKY A;  4P6R A;  2P3X A;  3GWJ A;  3AWX A;  5CE9 A;  4J6V A;  4J6T A;  3AWU A;  2Y9X A;  4Z10 A;  4L37 A;  1HCY A;  3QJO A;  3AWZ A;  3NQ1 A;  1BT3 A;  2ZWF A;  3AWY A;  3HHS B;  2Y9W A;  1BUG A;  4J3P A;  4YZW A;  1LNL A;  1WX4 A;  4Z0Z A;  3AWW A;  4OUA A;  3NTM A;  2AHL A;  4P6T A;  1WX2 A;  2ZMX A;  2ZMZ A;  4L37 B;  3W6Q A;  4HD4 A;  3W6W A;  4HD7 A;  4P6S A;  2ZMY A;  1NOL A;  5I3B A;  4J3R A;  3AX0 A;  4HD6 A;  1WX5 A;  4OUA B;  4J6U A;  4D87 A;  3WJM A;  1OXY A;  1LL1 A;  3NM8 A;  1HC1 A;  3NPY A;  4Z0Y A;  5I3A A;  2ZWD A;  2ZWG A;  3AWS A;  3NQ0 A;  1LLA A;  3AWV A;  1BT1 A;  1JS8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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