5IBKA

Skp1-f-box in complex with a ubiquitin variant
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
144
structure length
141
Chain Sequence
GAMPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords S-phase kinase-associated protein 1,S-phase kinase-associate
publication title Inhibition of SCF ubiquitin ligases by engineered ubiquitin variants that target the Cul1 binding site on the Skp1-F-box interface.
pubmed doi rcsb
source organism Homo sapiens
total genus 48
structure length 141
sequence length 144
chains with identical sequence D
ec nomenclature
pdb deposition date 2016-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01466 Skp1 Skp1 family, dimerisation domain
A PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 5ibkA00
2OVQA 3KVTA 3ZRCB 1FQVB 4HXIA 1P22B 4I6JC 3HQIA 2PPIA 4BKTB 3HTMA 4UYIA 2YY9A 3C6NA 5BO4C 4BGCA 2OVRA 3LUTB 3LBZA 2IHCA 3L2OA 2NN2A 2FNJC 4CXJA 2E31B 5A6RA 2VPKA 3OGLA 1LDKD 3ZUNB 4EOZA 1T1DA 1QDVA 4W9EB 2P1MA 5EUPA 3V7DA 1DSXA 3OGMA 1R2BA 5HYWB 1FS1B 3OGKA 3ZTDB 2P1OA 3B84A 3M4TA 3OHUA 1CS3A 3MKSA 4B95B 1EODA 2OVPA 3C6OA 3LNMB 4UIJA 3E4UA 2Z8HA 5LLIB 1FS2B 1NN7A 2JZ3C 4W9DB 4W9GB 3BIMA 4W9CB 1NEXA 4W9IB 3HU6A 1EOEA 4B9KB 3ZKJB 2NZ0B 4JGHC 1QDWA 5HZGC 3DCGB 2P1PA 3HVEB 3ZRFB 4AJYC 4W9FB 5DAFA 5IBKA 2MA9C 5H7GA 3DRZA 4W9KB 2P1NA 3M52A 4W9JB 5BXDA 5JH5B 1LQBB 2P1QA 3FKCA 3GA1A 4B9KE 4U2MA 4N9F5 4AP2A 3WSOB 5FTAA 3OHVA 2IF5A 1EOFA 4W9HH 4CXTA 1HV2A 3M5BA 2I2RA 4CXIA 2Q81A 4JTCB 3HVEA 4CP3A 3C6PA 4AWJB 3ZTCB 1VCBB 4U2NA 2ASSA 4W9LB 1R28A 1BUOA 2A79B 4ZOUA 4CRHA 5H7HA 5BXBA 4U77A 4WQOC 1A68A 2VKPA 4APFA 5A15A 5DADA 1EXBE 2R9RB 3I3NA 4J8ZA 1R29A 2IZVC 2E32B 3ZNGB 2C9WC 2ASTA 4JTDB 4W9HB 1S1GA 1LM8C 5BXHA 3M8VA 4JTAB 4BKSB
chains in the Genus database with same CATH superfamily
2OVQA 3KVTA 3ZRCB 1FQVB 4HXIA 1P22B 4I6JC 3HQIA 2PPIA 4BKTB 3HTMA 4UYIA 2YY9A 3C6NA 5BO4C 4BGCA 2OVRA 3LBZA 3LUTB 2IHCA 3L2OA 2NN2A 2FNJC 4CXJA 2E31B 5A6RA 2VPKA 3OGLA 1LDKD 3DRXA 3ZUNB 4EOZA 1T1DA 1QDVA 4W9EB 2P1MA 5EUPA 3V7DA 1DSXA 3OGMA 1R2BA 5HYWB 1FS1B 3OGKA 3ZTDB 2P1OA 3B84A 3M4TA 3OHUA 1CS3A 3MKSA 4B95B 1EODA 2OVPA 3C6OA 3LNMB 4UIJA 4YY8A 3E4UA 2Z8HA 5LLIB 1FS2B 1NN7A 2JZ3C 4W9DB 4W9GB 3BIMA 4W9CB 1NEXA 4ZGCA 4W9IB 3HU6A 1EOEA 4B9KB 3ZKJB 2NZ0B 4JGHC 1QDWA 5HZGC 3DCGB 2P1PA 3HVEB 3ZRFB 4AJYC 4W9FB 5DAFA 5IBKA 2MA9C 5H7GA 3DRZA 4W9KB 2P1NA 3M52A 4W9JB 5BXDA 5JH5B 1LQBB 2P1QA 3FKCA 3GA1A 4B9KE 4U2MA 4N9F5 4AP2A 3WSOB 5FTAA 3OHVA 2IF5A 1EOFA 3DRYA 4W9HH 4CXTA 1HV2A 3M5BA 2I2RA 4CXIA 2Q81A 4JTCB 3HVEA 4CP3A 3C6PA 4AWJB 3ZTCB 1VCBB 4U2NA 2ASSA 4W9LB 1R28A 1BUOA 2A79B 4ZOUA 4CRHA 5H7HA 5BXBA 4U77A 4WQOC 1A68A 2VKPA 4APFA 5A15A 5DADA 1EXBE 2R9RB 3I3NA 4J8ZA 1R29A 2IZVC 2E32B 3ZNGB 2C9WC 2ASTA 4JTDB 4W9HB 1S1GA 1LM8C 5BXHA 3M8VA 4JTAB 4BKSB
chains in the Genus database with same CATH topology
2OVQA 3KVTA 3ZRCB 1FQVB 4HXIA 1P22B 4I6JC 3HQIA 2PPIA 4BKTB 3HTMA 4UYIA 2YY9A 3C6NA 5BO4C 4BGCA 2OVRA 3LBZA 3LUTB 2IHCA 3L2OA 2NN2A 2FNJC 4CXJA 2E31B 5A6RA 2VPKA 3OGLA 1LDKD 3DRXA 3ZUNB 4EOZA 1T1DA 1QDVA 4W9EB 2P1MA 5EUPA 3V7DA 1DSXA 3OGMA 1R2BA 5HYWB 1FS1B 3OGKA 3ZTDB 2P1OA 3B84A 3M4TA 3OHUA 1CS3A 3MKSA 4B95B 1EODA 2OVPA 3C6OA 3LNMB 4UIJA 4YY8A 3E4UA 2Z8HA 5LLIB 1FS2B 1NN7A 2JZ3C 4W9DB 4W9GB 3BIMA 4W9CB 1NEXA 4ZGCA 4W9IB 3HU6A 1EOEA 4B9KB 3ZKJB 2NZ0B 4JGHC 1QDWA 5HZGC 3DCGB 2P1PA 3HVEB 3ZRFB 4AJYC 4W9FB 5DAFA 5IBKA 2MA9C 5H7GA 3DRZA 4W9KB 2P1NA 3M52A 4W9JB 5BXDA 5JH5B 1LQBB 2P1QA 3FKCA 3GA1A 4B9KE 4U2MA 4N9F5 4AP2A 3WSOB 5FTAA 3OHVA 2IF5A 1EOFA 3DRYA 4W9HH 4CXTA 1HV2A 3M5BA 2I2RA 4CXIA 2Q81A 4JTCB 3HVEA 4CP3A 3C6PA 4AWJB 3ZTCB 1VCBB 4U2NA 2ASSA 4W9LB 1R28A 1BUOA 2A79B 4ZOUA 4CRHA 5H7HA 5BXBA 4U77A 4WQOC 1A68A 2VKPA 4APFA 5A15A 5DADA 1EXBE 2R9RB 3I3NA 4J8ZA 1R29A 2IZVC 2E32B 3ZNGB 2C9WC 2ASTA 4JTDB 4W9HB 1S1GA 1LM8C 5BXHA 3M8VA 4JTAB 4BKSB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OVQ A;  3KVT A;  3ZRC B;  1FQV B;  4HXI A;  1P22 B;  4I6J C;  3HQI A;  2PPI A;  4BKT B;  3HTM A;  4UYI A;  2YY9 A;  3C6N A;  5BO4 C;  4BGC A;  2OVR A;  3LUT B;  3LBZ A;  2IHC A;  3L2O A;  2NN2 A;  2FNJ C;  4CXJ A;  2E31 B;  5A6R A;  2VPK A;  3OGL A;  1LDK D;  3ZUN B;  4EOZ A;  1T1D A;  1QDV A;  4W9E B;  2P1M A;  5EUP A;  3V7D A;  1DSX A;  3OGM A;  1R2B A;  5HYW B;  1FS1 B;  3OGK A;  3ZTD B;  2P1O A;  3B84 A;  3M4T A;  3OHU A;  1CS3 A;  3MKS A;  4B95 B;  1EOD A;  2OVP A;  3C6O A;  3LNM B;  4UIJ A;  3E4U A;  2Z8H A;  5LLI B;  1FS2 B;  1NN7 A;  2JZ3 C;  4W9D B;  4W9G B;  3BIM A;  4W9C B;  1NEX A;  4W9I B;  3HU6 A;  1EOE A;  4B9K B;  3ZKJ B;  2NZ0 B;  4JGH C;  1QDW A;  5HZG C;  3DCG B;  2P1P A;  3HVE B;  3ZRF B;  4AJY C;  4W9F B;  5DAF A;  5IBK A;  2MA9 C;  5H7G A;  3DRZ A;  4W9K B;  2P1N A;  3M52 A;  4W9J B;  5BXD A;  5JH5 B;  1LQB B;  2P1Q A;  3FKC A;  3GA1 A;  4B9K E;  4U2M A;  4N9F 5;  4AP2 A;  3WSO B;  5FTA A;  3OHV A;  2IF5 A;  1EOF A;  4W9H H;  4CXT A;  1HV2 A;  3M5B A;  2I2R A;  4CXI A;  2Q81 A;  4JTC B;  3HVE A;  4CP3 A;  3C6P A;  4AWJ B;  3ZTC B;  1VCB B;  4U2N A;  2ASS A;  4W9L B;  1R28 A;  1BUO A;  2A79 B;  4ZOU A;  4CRH A;  5H7H A;  5BXB A;  4U77 A;  4WQO C;  1A68 A;  2VKP A;  4APF A;  5A15 A;  5DAD A;  1EXB E;  2R9R B;  3I3N A;  4J8Z A;  1R29 A;  2IZV C;  2E32 B;  3ZNG B;  2C9W C;  2AST A;  4JTD B;  4W9H B;  1S1G A;  1LM8 C;  5BXH A;  3M8V A;  4JTA B;  4BKS B; 
#chains in the Genus database with same CATH topology
 2OVQ A;  3KVT A;  3ZRC B;  1FQV B;  4HXI A;  1P22 B;  4I6J C;  3HQI A;  2PPI A;  4BKT B;  3HTM A;  4UYI A;  2YY9 A;  3C6N A;  5BO4 C;  4BGC A;  2OVR A;  3LBZ A;  3LUT B;  2IHC A;  3L2O A;  2NN2 A;  2FNJ C;  4CXJ A;  2E31 B;  5A6R A;  2VPK A;  3OGL A;  1LDK D;  3DRX A;  3ZUN B;  4EOZ A;  1T1D A;  1QDV A;  4W9E B;  2P1M A;  5EUP A;  3V7D A;  1DSX A;  3OGM A;  1R2B A;  5HYW B;  1FS1 B;  3OGK A;  3ZTD B;  2P1O A;  3B84 A;  3M4T A;  3OHU A;  1CS3 A;  3MKS A;  4B95 B;  1EOD A;  2OVP A;  3C6O A;  3LNM B;  4UIJ A;  4YY8 A;  3E4U A;  2Z8H A;  5LLI B;  1FS2 B;  1NN7 A;  2JZ3 C;  4W9D B;  4W9G B;  3BIM A;  4W9C B;  1NEX A;  4ZGC A;  4W9I B;  3HU6 A;  1EOE A;  4B9K B;  3ZKJ B;  2NZ0 B;  4JGH C;  1QDW A;  5HZG C;  3DCG B;  2P1P A;  3HVE B;  3ZRF B;  4AJY C;  4W9F B;  5DAF A;  5IBK A;  2MA9 C;  5H7G A;  3DRZ A;  4W9K B;  2P1N A;  3M52 A;  4W9J B;  5BXD A;  5JH5 B;  1LQB B;  2P1Q A;  3FKC A;  3GA1 A;  4B9K E;  4U2M A;  4N9F 5;  4AP2 A;  3WSO B;  5FTA A;  3OHV A;  2IF5 A;  1EOF A;  3DRY A;  4W9H H;  4CXT A;  1HV2 A;  3M5B A;  2I2R A;  4CXI A;  2Q81 A;  4JTC B;  3HVE A;  4CP3 A;  3C6P A;  4AWJ B;  3ZTC B;  1VCB B;  4U2N A;  2ASS A;  4W9L B;  1R28 A;  1BUO A;  2A79 B;  4ZOU A;  4CRH A;  5H7H A;  5BXB A;  4U77 A;  4WQO C;  1A68 A;  2VKP A;  4APF A;  5A15 A;  5DAD A;  1EXB E;  2R9R B;  3I3N A;  4J8Z A;  1R29 A;  2IZV C;  2E32 B;  3ZNG B;  2C9W C;  2AST A;  4JTD B;  4W9H B;  1S1G A;  1LM8 C;  5BXH A;  3M8V A;  4JTA B;  4BKS B; 
#chains in the Genus database with same CATH homology
 2OVQ A;  3KVT A;  3ZRC B;  1FQV B;  4HXI A;  1P22 B;  4I6J C;  3HQI A;  2PPI A;  4BKT B;  3HTM A;  4UYI A;  2YY9 A;  3C6N A;  5BO4 C;  4BGC A;  2OVR A;  3LBZ A;  3LUT B;  2IHC A;  3L2O A;  2NN2 A;  2FNJ C;  4CXJ A;  2E31 B;  5A6R A;  2VPK A;  3OGL A;  1LDK D;  3DRX A;  3ZUN B;  4EOZ A;  1T1D A;  1QDV A;  4W9E B;  2P1M A;  5EUP A;  3V7D A;  1DSX A;  3OGM A;  1R2B A;  5HYW B;  1FS1 B;  3OGK A;  3ZTD B;  2P1O A;  3B84 A;  3M4T A;  3OHU A;  1CS3 A;  3MKS A;  4B95 B;  1EOD A;  2OVP A;  3C6O A;  3LNM B;  4UIJ A;  4YY8 A;  3E4U A;  2Z8H A;  5LLI B;  1FS2 B;  1NN7 A;  2JZ3 C;  4W9D B;  4W9G B;  3BIM A;  4W9C B;  1NEX A;  4ZGC A;  4W9I B;  3HU6 A;  1EOE A;  4B9K B;  3ZKJ B;  2NZ0 B;  4JGH C;  1QDW A;  5HZG C;  3DCG B;  2P1P A;  3HVE B;  3ZRF B;  4AJY C;  4W9F B;  5DAF A;  5IBK A;  2MA9 C;  5H7G A;  3DRZ A;  4W9K B;  2P1N A;  3M52 A;  4W9J B;  5BXD A;  5JH5 B;  1LQB B;  2P1Q A;  3FKC A;  3GA1 A;  4B9K E;  4U2M A;  4N9F 5;  4AP2 A;  3WSO B;  5FTA A;  3OHV A;  2IF5 A;  1EOF A;  3DRY A;  4W9H H;  4CXT A;  1HV2 A;  3M5B A;  2I2R A;  4CXI A;  2Q81 A;  4JTC B;  3HVE A;  4CP3 A;  3C6P A;  4AWJ B;  3ZTC B;  1VCB B;  4U2N A;  2ASS A;  4W9L B;  1R28 A;  1BUO A;  2A79 B;  4ZOU A;  4CRH A;  5H7H A;  5BXB A;  4U77 A;  4WQO C;  1A68 A;  2VKP A;  4APF A;  5A15 A;  5DAD A;  1EXB E;  2R9R B;  3I3N A;  4J8Z A;  1R29 A;  2IZV C;  2E32 B;  3ZNG B;  2C9W C;  2AST A;  4JTD B;  4W9H B;  1S1G A;  1LM8 C;  5BXH A;  3M8V A;  4JTA B;  4BKS B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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