5IIPA

Staphylococcus aureus opuca
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
117
structure length
116
Chain Sequence
EGVMIKPITIQAEATLNDAVHIMRQKRVDTIFVVDSNNHLLGFLDIEDINQGIRGHKSLRDTMQQHIYTVQIDSKLQSVRTILKRNVRNVPVVDDQQRLVGLITRANVVDIVYDTI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein
molecule keywords Glycine betaine/carnitine/choline ABC transporter%2C ATP-bin
publication title The second messenger c-di-AMP inhibits the osmolyte uptake system OpuC in Staphylococcus aureus.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 26
structure length 116
sequence length 117
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 5iipA00
3PC4A 1XKFA 4IY3A 3LV9A 4UUUA 2UV5A 2YVZA 4P1OA 4GQYA 4L28A 4ESYB 3TE5C 3OCOA 5KS7A 3SL7A 4GQWA 3HF7A 3KXRA 4P1GA 2OOXE 4HG0A 1Y5HA 2QH1A 2QR1E 3FV6A 2YVXA 2PFIA 3TDHC 4L27A 4COOA 2UV7A 2UV6A 2YVYA 3GBYA 1PVMA 3I8NA 2RIHA 3ORGA 5MMZA 3L31A 4FRYA 2NYEA 3OCMA 5K23C 3FWSA 3KH5A 3FHMA 2OOYE 2EF7A 2YZIA 4O9KA 4L0DA 4IY2A 3PC3A 4DQWA 4PCUA 2UV4A 2P9MA 3KPDA 3K2VA 2NYCA 2O16A 5K22B 4IY4A 3LFZA 2QRDE 5K25C 3FWRA 2QLVC 4ESYA 2D4ZA 2OUXA 3KPBA 2QREE 5LXQA 4GQVA 5IIPA 3LHHA 1O50A 2ZY9A 3K6EA 3DDJA 4L3VA 2YZQA 4FXSA 2EMQA 4IY0A 3FNAA 4IYSA 2RC3A 4NOCA 1YAVA 2RIFA 3PC2A 3L2BA 2QRCE 5K24C 3LQNA 3KPCA 1PBJA 3OI8A 3T4NC
chains in the Genus database with same CATH superfamily
3PC4A 1XKFA 4IY3A 3LV9A 4UUUA 2UV5A 2YVZA 4P1OA 4GQYA 4L28A 4ESYB 3TE5C 3OCOA 5KS7A 3SL7A 4GQWA 3HF7A 3KXRA 2JA3A 4P1GA 2OOXE 4HG0A 1Y5HA 2QH1A 2QR1E 3FV6A 2YVXA 2PFIA 3TDHC 4L27A 4COOA 2UV7A 2UV6A 2YVYA 3GBYA 1PVMA 3I8NA 2RIHA 3ORGA 5MMZA 3L31A 4FRYA 2NYEA 3OCMA 5K23C 3FWSA 3KH5A 3FHMA 2OOYE 2EF7A 2YZIA 4O9KA 4L0DA 4IY2A 3PC3A 4DQWA 4PCUA 2UV4A 2P9MA 3KPDA 3K2VA 2NYCA 2O16A 5K22B 4IY4A 3LFZA 2QRDE 5K25C 3FWRA 2QLVC 4ESYA 2D4ZA 2OUXA 3KPBA 2QREE 5LXQA 4GQVA 5IIPA 3LHHA 1O50A 2ZY9A 3K6EA 3DDJA 4L3VA 2YZQA 4FXSA 2EMQA 4IY0A 3FNAA 2J9LA 4IYSA 2RC3A 4NOCA 1YAVA 2RIFA 3PC2A 3L2BA 2QRCE 5K24C 3LQNA 3KPCA 1PBJA 3OI8A 3T4NC
chains in the Genus database with same CATH topology
3PC4A 1XKFA 4IY3A 3LV9A 4UUUA 2UV5A 2YVZA 4P1OA 4GQYA 4L28A 4ESYB 3TE5C 3OCOA 5KS7A 3SL7A 4GQWA 3HF7A 3KXRA 2JA3A 4P1GA 2OOXE 4HG0A 1Y5HA 2QH1A 2QR1E 3FV6A 2YVXA 2PFIA 3TDHC 4L27A 4COOA 2UV7A 2UV6A 2YVYA 3GBYA 1PVMA 3I8NA 2RIHA 3ORGA 5MMZA 3L31A 4FRYA 2NYEA 3OCMA 5K23C 3FWSA 3KH5A 3FHMA 2OOYE 2EF7A 2YZIA 4O9KA 4L0DA 4IY2A 3PC3A 4DQWA 4PCUA 2UV4A 2P9MA 3KPDA 3K2VA 2NYCA 2O16A 5K22B 4IY4A 3LFZA 2QRDE 5K25C 3FWRA 2QLVC 4ESYA 2D4ZA 2OUXA 3KPBA 2QREE 5LXQA 4GQVA 5IIPA 3LHHA 1O50A 2ZY9A 3K6EA 3DDJA 4L3VA 2YZQA 4FXSA 2EMQA 4IY0A 3FNAA 2J9LA 4IYSA 2RC3A 4NOCA 1YAVA 2RIFA 3PC2A 3L2BA 2QRCE 5K24C 3LQNA 3KPCA 1PBJA 3OI8A 3T4NC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PC4 A;  1XKF A;  4IY3 A;  3LV9 A;  4UUU A;  2UV5 A;  2YVZ A;  4P1O A;  4GQY A;  4L28 A;  4ESY B;  3TE5 C;  3OCO A;  5KS7 A;  3SL7 A;  4GQW A;  3HF7 A;  3KXR A;  4P1G A;  2OOX E;  4HG0 A;  1Y5H A;  2QH1 A;  2QR1 E;  3FV6 A;  2YVX A;  2PFI A;  3TDH C;  4L27 A;  4COO A;  2UV7 A;  2UV6 A;  2YVY A;  3GBY A;  1PVM A;  3I8N A;  2RIH A;  3ORG A;  5MMZ A;  3L31 A;  4FRY A;  2NYE A;  3OCM A;  5K23 C;  3FWS A;  3KH5 A;  3FHM A;  2OOY E;  2EF7 A;  2YZI A;  4O9K A;  4L0D A;  4IY2 A;  3PC3 A;  4DQW A;  4PCU A;  2UV4 A;  2P9M A;  3KPD A;  3K2V A;  2NYC A;  2O16 A;  5K22 B;  4IY4 A;  3LFZ A;  2QRD E;  5K25 C;  3FWR A;  2QLV C;  4ESY A;  2D4Z A;  2OUX A;  3KPB A;  2QRE E;  5LXQ A;  4GQV A;  5IIP A;  3LHH A;  1O50 A;  2ZY9 A;  3K6E A;  3DDJ A;  4L3V A;  2YZQ A;  4FXS A;  2EMQ A;  4IY0 A;  3FNA A;  4IYS A;  2RC3 A;  4NOC A;  1YAV A;  2RIF A;  3PC2 A;  3L2B A;  2QRC E;  5K24 C;  3LQN A;  3KPC A;  1PBJ A;  3OI8 A;  3T4N C; 
#chains in the Genus database with same CATH topology
 3PC4 A;  1XKF A;  4IY3 A;  3LV9 A;  4UUU A;  2UV5 A;  2YVZ A;  4P1O A;  4GQY A;  4L28 A;  4ESY B;  3TE5 C;  3OCO A;  5KS7 A;  3SL7 A;  4GQW A;  3HF7 A;  3KXR A;  2JA3 A;  4P1G A;  2OOX E;  4HG0 A;  1Y5H A;  2QH1 A;  2QR1 E;  3FV6 A;  2YVX A;  2PFI A;  3TDH C;  4L27 A;  4COO A;  2UV7 A;  2UV6 A;  2YVY A;  3GBY A;  1PVM A;  3I8N A;  2RIH A;  3ORG A;  5MMZ A;  3L31 A;  4FRY A;  2NYE A;  3OCM A;  5K23 C;  3FWS A;  3KH5 A;  3FHM A;  2OOY E;  2EF7 A;  2YZI A;  4O9K A;  4L0D A;  4IY2 A;  3PC3 A;  4DQW A;  4PCU A;  2UV4 A;  2P9M A;  3KPD A;  3K2V A;  2NYC A;  2O16 A;  5K22 B;  4IY4 A;  3LFZ A;  2QRD E;  5K25 C;  3FWR A;  2QLV C;  4ESY A;  2D4Z A;  2OUX A;  3KPB A;  2QRE E;  5LXQ A;  4GQV A;  5IIP A;  3LHH A;  1O50 A;  2ZY9 A;  3K6E A;  3DDJ A;  4L3V A;  2YZQ A;  4FXS A;  2EMQ A;  4IY0 A;  3FNA A;  2J9L A;  4IYS A;  2RC3 A;  4NOC A;  1YAV A;  2RIF A;  3PC2 A;  3L2B A;  2QRC E;  5K24 C;  3LQN A;  3KPC A;  1PBJ A;  3OI8 A;  3T4N C; 
#chains in the Genus database with same CATH homology
 3PC4 A;  1XKF A;  4IY3 A;  3LV9 A;  4UUU A;  2UV5 A;  2YVZ A;  4P1O A;  4GQY A;  4L28 A;  4ESY B;  3TE5 C;  3OCO A;  5KS7 A;  3SL7 A;  4GQW A;  3HF7 A;  3KXR A;  2JA3 A;  4P1G A;  2OOX E;  4HG0 A;  1Y5H A;  2QH1 A;  2QR1 E;  3FV6 A;  2YVX A;  2PFI A;  3TDH C;  4L27 A;  4COO A;  2UV7 A;  2UV6 A;  2YVY A;  3GBY A;  1PVM A;  3I8N A;  2RIH A;  3ORG A;  5MMZ A;  3L31 A;  4FRY A;  2NYE A;  3OCM A;  5K23 C;  3FWS A;  3KH5 A;  3FHM A;  2OOY E;  2EF7 A;  2YZI A;  4O9K A;  4L0D A;  4IY2 A;  3PC3 A;  4DQW A;  4PCU A;  2UV4 A;  2P9M A;  3KPD A;  3K2V A;  2NYC A;  2O16 A;  5K22 B;  4IY4 A;  3LFZ A;  2QRD E;  5K25 C;  3FWR A;  2QLV C;  4ESY A;  2D4Z A;  2OUX A;  3KPB A;  2QRE E;  5LXQ A;  4GQV A;  5IIP A;  3LHH A;  1O50 A;  2ZY9 A;  3K6E A;  3DDJ A;  4L3V A;  2YZQ A;  4FXS A;  2EMQ A;  4IY0 A;  3FNA A;  2J9L A;  4IYS A;  2RC3 A;  4NOC A;  1YAV A;  2RIF A;  3PC2 A;  3L2B A;  2QRC E;  5K24 C;  3LQN A;  3KPC A;  1PBJ A;  3OI8 A;  3T4N C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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