5IJMA

Crystal structure of an acyl-coa binding protein (lmjf.17.0620) of leishmania major
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
98
structure length
98
Chain Sequence
b'SHMSAADFEAAVAYVRSLPKEGPVQLDNAAKLQFYSLYKQATEGDVTGSQPWAVQVEARAKWDAWNSCKGMKSEDAKAAYVRRLLTLLRSQGIQWKPG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of an Acyl-CoA Binding Protein (LmjF.17.0620) of Leishmania major
rcsb
molecule keywords Uncharacterized protein
source organism Leishmania major
molecule tags Lipid binding protein
total genus 33
structure length 98
sequence length 98
ec nomenclature
pdb deposition date 2016-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 5ijmA00
1MIXA 1GG3A 3X23A 3FP5A 4HDOA 2FDQA 4HDQA 2EMSA 2EMTA 1MK7B 2D2QA 4CYEA 2J0MA 2J0JA 2AL6A 4ZRKA 2HE7A 2J0KA 1J19A 2CQUA 3PVLA 1NVLA 3AU4A 1ACAA 1HB8A 3IVFA 2AEHA 2CB8A 2RQ1A 1EF1A 1SGHA 2D10A 3BINA 4DXAB 1ST7A 1E5WA 3PZDA 4NY0A 2COPA 2ZPYA 2HRJA 2YVCA 3QIJA 2WH5A 1HB6A 4ZRJA 1GC7A 1ISNA 1H4RA 3AU5A 5IJMA 3ZDTA 2ABDA 1HBKA 1MK9B 2D11A 3U7DA 1NI2A 1Y19B 3FLVA 1NTIA 2FJ9A 1MIZB 1GC6A 3G9WA 4ZRIA 2I1KA 4YL8A 2LBBA 3U8ZA 4F7GA 3WA0A 4P7IA 3EPYA 4EKUA 2I1JA
chains in the Genus database with same CATH superfamily
1MIXA 3FP5A 2EMSA 1MK7B 4JKGA 2J0MA 2AL6A 1J19A 1ACAA 1KC7A 2R82A 3IVFA 1EF1A 4DXAB 3PZDA 2COPA 4ILJA 3QIJA 4JKDA 1VBGA 2WH5A 1HB6A 3ENBA 1NI2A 1NTIA 2FJ9A 4ILHA 4P7IA 1DIKA 2X0SA 3SBTA 1GG3A 1JDEA 4HDOA 2DIKA 2EMTA 4GXBA 4JKHA 2J0KA 1NVLA 2AEHA 4JKBA 2RQ1A 5JVLA 4NY0A 5IJMA 3E9LA 3ZDTA 3U7DA 1KBLA 4JK7A 4JK8A 3WA0A 2I1JA 4HDQA 2FDQA 4JKFA 4CYEA 4JK9A 2HE7A 2CQUA 3SBGA 4JKGB 2D10A 3BINA 4JKAA 2YVCA 1ISNA 1H4RA 3AU5A 1MK9B 1Y19B 3E66A 1MIZB 3E9PA 4ZRIA 2I1KA 4ILGB 4EKUA 4ZRJA 3X23A 2D2QA 4JKEA 2J0JA 4ZRKA 1VBHA 1GGOA 3PVLA 3AU4A 1HB8A 2CB8A 1SGHA 1ST7A 1E5WA 4JKCA 2ZPYA 2HRJA 1GC7A 2ABDA 1HBKA 2D11A 4TKNA 3E9OA 3FLVA 1GC6A 4YL8A 3U8ZA 2LBBA 4F7GA 3EPYA 3G9WA
chains in the Genus database with same CATH topology
1MIXA 3FP5A 2EMSA 1MK7B 4JKGA 2J0MA 2AL6A 1J19A 1ACAA 1KC7A 2R82A 3IVFA 1EF1A 4DXAB 3PZDA 2COPA 4ILJA 3QIJA 4JKDA 1VBGA 2WH5A 1HB6A 3ENBA 1NI2A 1NTIA 2FJ9A 4ILHA 4P7IA 1DIKA 2X0SA 3SBTA 1GG3A 1JDEA 4HDOA 2DIKA 2EMTA 4GXBA 4JKHA 2J0KA 1NVLA 2AEHA 4JKBA 2RQ1A 5JVLA 4NY0A 5IJMA 3E9LA 3ZDTA 3U7DA 1KBLA 4JK7A 4JK8A 3WA0A 2I1JA 4HDQA 2FDQA 4JKFA 4CYEA 4JK9A 2HE7A 2CQUA 3SBGA 4JKGB 2D10A 3BINA 4JKAA 2YVCA 1ISNA 1H4RA 3AU5A 1MK9B 1Y19B 3E66A 1MIZB 3E9PA 4ZRIA 2I1KA 4ILGB 4EKUA 4ZRJA 3X23A 2D2QA 4JKEA 2J0JA 4ZRKA 1VBHA 1GGOA 3PVLA 3AU4A 1HB8A 2CB8A 1SGHA 1ST7A 1E5WA 4JKCA 2ZPYA 2HRJA 1GC7A 2ABDA 1HBKA 2D11A 4TKNA 3E9OA 3FLVA 1GC6A 4YL8A 3U8ZA 2LBBA 4F7GA 3EPYA 3G9WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MIX A;  1GG3 A;  3X23 A;  3FP5 A;  4HDO A;  2FDQ A;  4HDQ A;  2EMS A;  2EMT A;  1MK7 B;  2D2Q A;  4CYE A;  2J0M A;  2J0J A;  2AL6 A;  4ZRK A;  2HE7 A;  2J0K A;  1J19 A;  2CQU A;  3PVL A;  1NVL A;  3AU4 A;  1ACA A;  1HB8 A;  3IVF A;  2AEH A;  2CB8 A;  2RQ1 A;  1EF1 A;  1SGH A;  2D10 A;  3BIN A;  4DXA B;  1ST7 A;  1E5W A;  3PZD A;  4NY0 A;  2COP A;  2ZPY A;  2HRJ A;  2YVC A;  3QIJ A;  2WH5 A;  1HB6 A;  4ZRJ A;  1GC7 A;  1ISN A;  1H4R A;  3AU5 A;  5IJM A;  3ZDT A;  2ABD A;  1HBK A;  1MK9 B;  2D11 A;  3U7D A;  1NI2 A;  1Y19 B;  3FLV A;  1NTI A;  2FJ9 A;  1MIZ B;  1GC6 A;  3G9W A;  4ZRI A;  2I1K A;  4YL8 A;  2LBB A;  3U8Z A;  4F7G A;  3WA0 A;  4P7I A;  3EPY A;  4EKU A;  2I1J A; 
#chains in the Genus database with same CATH topology
 1MIX A;  3FP5 A;  2EMS A;  1MK7 B;  4JKG A;  2J0M A;  2AL6 A;  1J19 A;  1ACA A;  1KC7 A;  2R82 A;  3IVF A;  1EF1 A;  4DXA B;  3PZD A;  2COP A;  4ILJ A;  3QIJ A;  4JKD A;  1VBG A;  2WH5 A;  1HB6 A;  3ENB A;  1NI2 A;  1NTI A;  2FJ9 A;  4ILH A;  4P7I A;  1DIK A;  2X0S A;  3SBT A;  1GG3 A;  1JDE A;  4HDO A;  2DIK A;  2EMT A;  4GXB A;  4JKH A;  2J0K A;  1NVL A;  2AEH A;  4JKB A;  2RQ1 A;  5JVL A;  4NY0 A;  5IJM A;  3E9L A;  3ZDT A;  3U7D A;  1KBL A;  4JK7 A;  4JK8 A;  3WA0 A;  2I1J A;  4HDQ A;  2FDQ A;  4JKF A;  4CYE A;  4JK9 A;  2HE7 A;  2CQU A;  3SBG A;  4JKG B;  2D10 A;  3BIN A;  4JKA A;  2YVC A;  1ISN A;  1H4R A;  3AU5 A;  1MK9 B;  1Y19 B;  3E66 A;  1MIZ B;  3E9P A;  4ZRI A;  2I1K A;  4ILG B;  4EKU A;  4ZRJ A;  3X23 A;  2D2Q A;  4JKE A;  2J0J A;  4ZRK A;  1VBH A;  1GGO A;  3PVL A;  3AU4 A;  1HB8 A;  2CB8 A;  1SGH A;  1ST7 A;  1E5W A;  4JKC A;  2ZPY A;  2HRJ A;  1GC7 A;  2ABD A;  1HBK A;  2D11 A;  4TKN A;  3E9O A;  3FLV A;  1GC6 A;  4YL8 A;  3U8Z A;  2LBB A;  4F7G A;  3EPY A;  3G9W A; 
#chains in the Genus database with same CATH homology
 1MIX A;  3FP5 A;  2EMS A;  1MK7 B;  4JKG A;  2J0M A;  2AL6 A;  1J19 A;  1ACA A;  1KC7 A;  2R82 A;  3IVF A;  1EF1 A;  4DXA B;  3PZD A;  2COP A;  4ILJ A;  3QIJ A;  4JKD A;  1VBG A;  2WH5 A;  1HB6 A;  3ENB A;  1NI2 A;  1NTI A;  2FJ9 A;  4ILH A;  4P7I A;  1DIK A;  2X0S A;  3SBT A;  1GG3 A;  1JDE A;  4HDO A;  2DIK A;  2EMT A;  4GXB A;  4JKH A;  2J0K A;  1NVL A;  2AEH A;  4JKB A;  2RQ1 A;  5JVL A;  4NY0 A;  5IJM A;  3E9L A;  3ZDT A;  3U7D A;  1KBL A;  4JK7 A;  4JK8 A;  3WA0 A;  2I1J A;  4HDQ A;  2FDQ A;  4JKF A;  4CYE A;  4JK9 A;  2HE7 A;  2CQU A;  3SBG A;  4JKG B;  2D10 A;  3BIN A;  4JKA A;  2YVC A;  1ISN A;  1H4R A;  3AU5 A;  1MK9 B;  1Y19 B;  3E66 A;  1MIZ B;  3E9P A;  4ZRI A;  2I1K A;  4ILG B;  4EKU A;  4ZRJ A;  3X23 A;  2D2Q A;  4JKE A;  2J0J A;  4ZRK A;  1VBH A;  1GGO A;  3PVL A;  3AU4 A;  1HB8 A;  2CB8 A;  1SGH A;  1ST7 A;  1E5W A;  4JKC A;  2ZPY A;  2HRJ A;  1GC7 A;  2ABD A;  1HBK A;  2D11 A;  4TKN A;  3E9O A;  3FLV A;  1GC6 A;  4YL8 A;  3U8Z A;  2LBB A;  4F7G A;  3EPY A;  3G9W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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