5IJMA

Crystal structure of an acyl-coa binding protein (lmjf.17.0620) of leishmania major
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
98
structure length
98
Chain Sequence
SHMSAADFEAAVAYVRSLPKEGPVQLDNAAKLQFYSLYKQATEGDVTGSQPWAVQVEARAKWDAWNSCKGMKSEDAKAAYVRRLLTLLRSQGIQWKPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid binding protein
source organism Leishmania major
publication title Crystal Structure of an Acyl-CoA Binding Protein (LmjF.17.0620) of Leishmania major
rcsb
molecule keywords Uncharacterized protein
total genus 33
structure length 98
sequence length 98
ec nomenclature
pdb deposition date 2016-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 5ijmA00
2AL6A 1MK9B 4P7IA 1J19A 4F7GA 1Y19B 1ACAA 4YL8A 1NVLA 4DXAB 4ZRJA 2CB8A 3FP5A 1MIZB 1GC6A 2D10A 2ABDA 2EMSA 1HB8A 2LBBA 2COPA 3EPYA 3PZDA 2WH5A 4NY0A 1ST7A 3BINA 2AEHA 2YVCA 3U8ZA 1HBKA 3G9WA 1MIXA 1MK7B 3FLVA 2FJ9A 2HRJA 2D11A 3AU4A 3X23A 4EKUA 2I1JA 1GG3A 3IVFA 1ISNA 1SGHA 4CYEA 3QIJA 1E5WA 3AU5A 1GC7A 2CQUA 1H4RA 4HDQA 3WA0A 1EF1A 2HE7A 1HB6A 1NI2A 2FDQA 2J0JA 4ZRKA 2ZPYA 3U7DA 5IJMA 3ZDTA 2J0KA 4ZRIA 2D2QA 2I1KA 2EMTA 2J0MA 3PVLA 4HDOA 2RQ1A 1NTIA
chains in the Genus database with same CATH superfamily
1MK9B 4JKDA 1JDEA 4ZRJA 2X0SA 2EMSA 4NY0A 2LBBA 2COPA 3U8ZA 1HBKA 4JKAA 1ISNA 4ILHA 1E5WA 4EKUA 1NI2A 3U7DA 2ZPYA 3E9PA 3ZDTA 2J0KA 2I1KA 3PVLA 4HDOA 2RQ1A 4P7IA 3E66A 4F7GA 4JKGB 3E9OA 4JKHA 1DIKA 1KC7A 2CB8A 3FP5A 1MIZB 1GC6A 2WH5A 4JKEA 1VBHA 2YVCA 4ILGB 4JKBA 3AU4A 4CYEA 3AU5A 3SBGA 3X23A 3WA0A 1EF1A 2HE7A 3ENBA 4ZRIA 1J19A 1Y19B 4JK7A 1ACAA 4YL8A 1NVLA 4DXAB 4ILJA 2D10A 4JKCA 1VBGA 4JKFA 1HB8A 1ST7A 3BINA 2AEHA 3G9WA 1MIXA 1MK7B 2FJ9A 2I1JA 1GG3A 1SGHA 3QIJA 1GC7A 4ZRKA 1HB6A 2FDQA 2J0JA 4JK9A 5IJMA 2R82A 5JVLA 2EMTA 2J0MA 4HDQA 2AL6A 1NTIA 1GGOA 3E9LA 1KBLA 4GXBA 2ABDA 3EPYA 3PZDA 3FLVA 2HRJA 2D11A 3IVFA 2DIKA 4JK8A 2CQUA 1H4RA 4TKNA 3SBTA 4JKGA 2D2QA
chains in the Genus database with same CATH topology
1MK9B 4JKDA 1JDEA 4ZRJA 2X0SA 2EMSA 4NY0A 2LBBA 2COPA 3U8ZA 1HBKA 4JKAA 1ISNA 4ILHA 1E5WA 4EKUA 1NI2A 3U7DA 2ZPYA 3E9PA 3ZDTA 2J0KA 2I1KA 3PVLA 4HDOA 2RQ1A 4P7IA 3E66A 4F7GA 4JKGB 3E9OA 4JKHA 1DIKA 1KC7A 2CB8A 3FP5A 1MIZB 1GC6A 2WH5A 4JKEA 1VBHA 2YVCA 4ILGB 4JKBA 3AU4A 4CYEA 3AU5A 3SBGA 3X23A 3WA0A 1EF1A 2HE7A 3ENBA 4ZRIA 1J19A 1Y19B 4JK7A 1ACAA 4YL8A 1NVLA 4DXAB 4ILJA 2D10A 4JKCA 1VBGA 4JKFA 1HB8A 1ST7A 3BINA 2AEHA 3G9WA 1MIXA 1MK7B 2FJ9A 2I1JA 1GG3A 1SGHA 3QIJA 1GC7A 4ZRKA 1HB6A 2FDQA 2J0JA 4JK9A 5IJMA 2R82A 5JVLA 2EMTA 2J0MA 4HDQA 2AL6A 1NTIA 1GGOA 3E9LA 1KBLA 4GXBA 2ABDA 3EPYA 3PZDA 3FLVA 2HRJA 2D11A 3IVFA 2DIKA 4JK8A 2CQUA 1H4RA 4TKNA 3SBTA 4JKGA 2D2QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AL6 A;  1MK9 B;  4P7I A;  1J19 A;  4F7G A;  1Y19 B;  1ACA A;  4YL8 A;  1NVL A;  4DXA B;  4ZRJ A;  2CB8 A;  3FP5 A;  1MIZ B;  1GC6 A;  2D10 A;  2ABD A;  2EMS A;  1HB8 A;  2LBB A;  2COP A;  3EPY A;  3PZD A;  2WH5 A;  4NY0 A;  1ST7 A;  3BIN A;  2AEH A;  2YVC A;  3U8Z A;  1HBK A;  3G9W A;  1MIX A;  1MK7 B;  3FLV A;  2FJ9 A;  2HRJ A;  2D11 A;  3AU4 A;  3X23 A;  4EKU A;  2I1J A;  1GG3 A;  3IVF A;  1ISN A;  1SGH A;  4CYE A;  3QIJ A;  1E5W A;  3AU5 A;  1GC7 A;  2CQU A;  1H4R A;  4HDQ A;  3WA0 A;  1EF1 A;  2HE7 A;  1HB6 A;  1NI2 A;  2FDQ A;  2J0J A;  4ZRK A;  2ZPY A;  3U7D A;  5IJM A;  3ZDT A;  2J0K A;  4ZRI A;  2D2Q A;  2I1K A;  2EMT A;  2J0M A;  3PVL A;  4HDO A;  2RQ1 A;  1NTI A; 
#chains in the Genus database with same CATH topology
 1MK9 B;  4JKD A;  1JDE A;  4ZRJ A;  2X0S A;  2EMS A;  4NY0 A;  2LBB A;  2COP A;  3U8Z A;  1HBK A;  4JKA A;  1ISN A;  4ILH A;  1E5W A;  4EKU A;  1NI2 A;  3U7D A;  2ZPY A;  3E9P A;  3ZDT A;  2J0K A;  2I1K A;  3PVL A;  4HDO A;  2RQ1 A;  4P7I A;  3E66 A;  4F7G A;  4JKG B;  3E9O A;  4JKH A;  1DIK A;  1KC7 A;  2CB8 A;  3FP5 A;  1MIZ B;  1GC6 A;  2WH5 A;  4JKE A;  1VBH A;  2YVC A;  4ILG B;  4JKB A;  3AU4 A;  4CYE A;  3AU5 A;  3SBG A;  3X23 A;  3WA0 A;  1EF1 A;  2HE7 A;  3ENB A;  4ZRI A;  1J19 A;  1Y19 B;  4JK7 A;  1ACA A;  4YL8 A;  1NVL A;  4DXA B;  4ILJ A;  2D10 A;  4JKC A;  1VBG A;  4JKF A;  1HB8 A;  1ST7 A;  3BIN A;  2AEH A;  3G9W A;  1MIX A;  1MK7 B;  2FJ9 A;  2I1J A;  1GG3 A;  1SGH A;  3QIJ A;  1GC7 A;  4ZRK A;  1HB6 A;  2FDQ A;  2J0J A;  4JK9 A;  5IJM A;  2R82 A;  5JVL A;  2EMT A;  2J0M A;  4HDQ A;  2AL6 A;  1NTI A;  1GGO A;  3E9L A;  1KBL A;  4GXB A;  2ABD A;  3EPY A;  3PZD A;  3FLV A;  2HRJ A;  2D11 A;  3IVF A;  2DIK A;  4JK8 A;  2CQU A;  1H4R A;  4TKN A;  3SBT A;  4JKG A;  2D2Q A; 
#chains in the Genus database with same CATH homology
 1MK9 B;  4JKD A;  1JDE A;  4ZRJ A;  2X0S A;  2EMS A;  4NY0 A;  2LBB A;  2COP A;  3U8Z A;  1HBK A;  4JKA A;  1ISN A;  4ILH A;  1E5W A;  4EKU A;  1NI2 A;  3U7D A;  2ZPY A;  3E9P A;  3ZDT A;  2J0K A;  2I1K A;  3PVL A;  4HDO A;  2RQ1 A;  4P7I A;  3E66 A;  4F7G A;  4JKG B;  3E9O A;  4JKH A;  1DIK A;  1KC7 A;  2CB8 A;  3FP5 A;  1MIZ B;  1GC6 A;  2WH5 A;  4JKE A;  1VBH A;  2YVC A;  4ILG B;  4JKB A;  3AU4 A;  4CYE A;  3AU5 A;  3SBG A;  3X23 A;  3WA0 A;  1EF1 A;  2HE7 A;  3ENB A;  4ZRI A;  1J19 A;  1Y19 B;  4JK7 A;  1ACA A;  4YL8 A;  1NVL A;  4DXA B;  4ILJ A;  2D10 A;  4JKC A;  1VBG A;  4JKF A;  1HB8 A;  1ST7 A;  3BIN A;  2AEH A;  3G9W A;  1MIX A;  1MK7 B;  2FJ9 A;  2I1J A;  1GG3 A;  1SGH A;  3QIJ A;  1GC7 A;  4ZRK A;  1HB6 A;  2FDQ A;  2J0J A;  4JK9 A;  5IJM A;  2R82 A;  5JVL A;  2EMT A;  2J0M A;  4HDQ A;  2AL6 A;  1NTI A;  1GGO A;  3E9L A;  1KBL A;  4GXB A;  2ABD A;  3EPY A;  3PZD A;  3FLV A;  2HRJ A;  2D11 A;  3IVF A;  2DIK A;  4JK8 A;  2CQU A;  1H4R A;  4TKN A;  3SBT A;  4JKG A;  2D2Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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