5IMYC

Trapped toxin
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
78
structure length
78
Chain Sequence
MLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin/toxin receptor
source organism Gardnerella vaginalis
publication title Structural Basis for Receptor Recognition by the Human CD59-Responsive Cholesterol-Dependent Cytolysins.
pubmed doi rcsb
molecule keywords Vaginolysin
total genus 16
structure length 78
sequence length 78
chains with identical sequence D
ec nomenclature
pdb deposition date 2016-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 5imyC00
4P7UA 1ABTA 1CB9A 4UY2C 2H62C 5IMYC 1ZADA 3BT2U 3PLCA 5DZ5A 1CCQA 1JBDA 2MJ4A 1XT3A 1NEAA 1CXOA 1BTEA 1M9ZA 2BTXA 2JQPA 1FASA 1YWHA 2GOOC 2JVEA 1MAHF 2GOOB 4OM5A 2BHIA 1IJCA 6EBXA 1IDHA 1MR6A 1ERGA 1ERAA 3BT1U 1PLOA 2L5SA 1JE9A 2LA1A 1IKCA 1ONJA 1V6PA 4LFTA 2FD6U 3EBXA 2QJ9C 1CTXA 2UWRA 1IDLA 5EBXA 1NORA 1LSIA 1NTNA 1KFHA 1IQ9A 2X8BB 1NYUA 2CCXA 1HAAA 1LX5B 2H7ZA 4AEAA 1ES7B 1FFJA 4ZQYA 3FEVA 2ABXA 1L4WA 1TFSA 1S4YA 2N99A 1CODA 2L03A 5IMTD 1VB0A 2MUPA 1QKEA 2H62D 1KBTA 3EVSC 2UX2A 5DO6A 2H7ZB 1HAJA 4FAOE 2MFAA 4QTIU 1CDQA 1HC9A 1IDIA 1RGJA 1LXHA 2J8BA 2MHYA 2QJAC 2H8UA 1CREA 1HOYA 3U73U 1IDGA 2QJBC 2H64C 2QC1A 1FSSB 3LAQU 5DU1A 2H64B 4OM4A 1RL5A 2LCRA 2ERAA 3QB4B 1F8UB 3NH7A 1DRSA 3VTSA 2VLWA 1COEA 1LJZA 1LXGA 3KFDI 1HC9B 1IK8A 1FSCA 2CRTA 4BDTB 4BIKB 1KS6A 1CDTA 1CHVS 1NXBA 1JGKA 1KBAA 1F94A 1CVOA 4DO8A 3NDSA 2OFSA 2PJYC 3ERAA 1UG4A 1KBSA 1CRFA 4IYEA 1BXPA 1KU6B 2PJYB 3HH7A 4EY8B 1TXBA 1FF4A 2CDXA 4FAOC 1KTZB 1CXNA 1KC4A 2CTXA 1G6MA 1NYSA 1REWC 1CDSA 1B41B 1NTXA 3KFDE 2NBTA 1TXAA 2CRSA 2K3GA 4HQPF 1QM7A 1TGXA 4RUDA 1H0JA 1FRAA 3U74U 1KL8A 3NEQA 2MUOA 2HLRA 1KXIA 2I9BE 2MJYA 1W6BA 4XJJA 1CDRA 1I02A 2HLQA 2H5FA 2MJ0A 1QKDA
chains in the Genus database with same CATH superfamily
4P7UA 1ABTA 1CB9A 4UY2C 2H62C 5IMYC 1ZADA 3BT2U 3PLCA 5DZ5A 1CCQA 1JBDA 2MJ4A 1XT3A 1NEAA 1CXOA 1BTEA 1M9ZA 2BTXA 2JQPA 1FASA 1YWHA 2GOOC 2JVEA 1MAHF 2GOOB 4OM5A 2BHIA 1IJCA 6EBXA 1IDHA 1MR6A 1ERGA 1ERAA 3BT1U 1PLOA 2L5SA 1JE9A 2LA1A 1IKCA 1ONJA 1V6PA 4LFTA 2FD6U 3EBXA 2QJ9C 1CTXA 2UWRA 1IDLA 5EBXA 1NORA 1LSIA 1NTNA 1KFHA 1IQ9A 2X8BB 1NYUA 2CCXA 1HAAA 1LX5B 2H7ZA 4AEAA 1ES7B 1FFJA 4ZQYA 3FEVA 2ABXA 1L4WA 1TFSA 1S4YA 2N99A 1CODA 2L03A 5IMTD 1VB0A 2MUPA 1QKEA 2H62D 1KBTA 3EVSC 2UX2A 5DO6A 2H7ZB 1HAJA 4FAOE 2MFAA 4QTIU 1CDQA 1HC9A 1IDIA 1RGJA 1LXHA 2J8BA 2MHYA 2QJAC 2H8UA 1CREA 1HOYA 3U73U 1IDGA 2QJBC 2H64C 2QC1A 1FSSB 3LAQU 5DU1A 4KSNA 2H64B 4OM4A 1RL5A 2LCRA 2ERAA 3QB4B 1F8UB 3NH7A 1DRSA 3VTSA 2VLWA 1COEA 1LJZA 1LXGA 3KFDI 1HC9B 1IK8A 1FSCA 2CRTA 4BDTB 4BIKB 1KS6A 1CDTA 1CHVS 1NXBA 1JGKA 1KBAA 1F94A 1CVOA 4DO8A 3NDSA 2OFSA 2PJYC 3ERAA 1UG4A 1KBSA 1CRFA 4IYEA 1BXPA 1KU6B 2PJYB 3HH7A 4EY8B 1TXBA 1FF4A 2CDXA 4FAOC 1KTZB 1CXNA 1KC4A 2CTXA 1G6MA 1NYSA 1REWC 1CDSA 1B41B 1NTXA 3KFDE 2NBTA 1TXAA 2CRSA 2K3GA 4HQPF 1QM7A 1TGXA 4RUDA 1H0JA 1FRAA 3U74U 1KL8A 3NEQA 2MUOA 2HLRA 1KXIA 2I9BE 2MJYA 1W6BA 4XJJA 1CDRA 1I02A 2HLQA 2H5FA 2MJ0A 1QKDA
chains in the Genus database with same CATH topology
4P7UA 1ABTA 1CB9A 4UY2C 2H62C 5IMYC 1ZADA 3BT2U 3PLCA 5DZ5A 1CCQA 1JBDA 2MJ4A 1XT3A 1NEAA 1CXOA 1BTEA 1M9ZA 2BTXA 2JQPA 1FASA 1YWHA 2GOOC 2JVEA 1MAHF 2GOOB 4OM5A 2BHIA 1IJCA 6EBXA 1IDHA 1MR6A 1ERGA 1ERAA 3BT1U 1PLOA 2L5SA 1JE9A 2LA1A 1IKCA 1ONJA 1V6PA 4LFTA 2FD6U 3EBXA 2QJ9C 1CTXA 2UWRA 1IDLA 5EBXA 1NORA 1LSIA 1NTNA 1KFHA 1IQ9A 2X8BB 1NYUA 2CCXA 1HAAA 1LX5B 2H7ZA 4AEAA 1ES7B 1FFJA 4ZQYA 3FEVA 2ABXA 1L4WA 1TFSA 1S4YA 2N99A 1CODA 2L03A 5IMTD 1VB0A 2MUPA 1QKEA 2H62D 1KBTA 3EVSC 2UX2A 5DO6A 2H7ZB 1HAJA 4FAOE 2MFAA 4QTIU 1CDQA 1HC9A 1IDIA 1RGJA 1LXHA 2J8BA 2MHYA 2QJAC 2H8UA 1CREA 1HOYA 3U73U 1IDGA 2QJBC 2H64C 2QC1A 1FSSB 3LAQU 5DU1A 4KSNA 2H64B 4OM4A 1RL5A 2LCRA 2ERAA 3QB4B 1F8UB 3NH7A 1DRSA 3VTSA 2VLWA 1COEA 1LJZA 1LXGA 3KFDI 1HC9B 1IK8A 1FSCA 2CRTA 4BDTB 4BIKB 1KS6A 1CDTA 1CHVS 1NXBA 1JGKA 1KBAA 1F94A 1CVOA 4DO8A 3NDSA 2OFSA 2PJYC 3ERAA 1UG4A 1KBSA 1CRFA 4IYEA 1BXPA 1KU6B 2PJYB 3HH7A 4EY8B 1TXBA 1FF4A 2CDXA 4FAOC 1KTZB 1CXNA 1KC4A 2CTXA 1G6MA 1NYSA 1REWC 1CDSA 1B41B 1NTXA 3KFDE 2NBTA 1TXAA 2CRSA 2K3GA 4HQPF 1QM7A 1TGXA 4RUDA 1H0JA 1FRAA 3U74U 1KL8A 3NEQA 2MUOA 2HLRA 1KXIA 2I9BE 2MJYA 1W6BA 4XJJA 1CDRA 1I02A 2HLQA 2H5FA 2MJ0A 1QKDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P7U A;  1ABT A;  1CB9 A;  4UY2 C;  2H62 C;  5IMY C;  1ZAD A;  3BT2 U;  3PLC A;  5DZ5 A;  1CCQ A;  1JBD A;  2MJ4 A;  1XT3 A;  1NEA A;  1CXO A;  1BTE A;  1M9Z A;  2BTX A;  2JQP A;  1FAS A;  1YWH A;  2GOO C;  2JVE A;  1MAH F;  2GOO B;  4OM5 A;  2BHI A;  1IJC A;  6EBX A;  1IDH A;  1MR6 A;  1ERG A;  1ERA A;  3BT1 U;  1PLO A;  2L5S A;  1JE9 A;  2LA1 A;  1IKC A;  1ONJ A;  1V6P A;  4LFT A;  2FD6 U;  3EBX A;  2QJ9 C;  1CTX A;  2UWR A;  1IDL A;  5EBX A;  1NOR A;  1LSI A;  1NTN A;  1KFH A;  1IQ9 A;  2X8B B;  1NYU A;  2CCX A;  1HAA A;  1LX5 B;  2H7Z A;  4AEA A;  1ES7 B;  1FFJ A;  4ZQY A;  3FEV A;  2ABX A;  1L4W A;  1TFS A;  1S4Y A;  2N99 A;  1COD A;  2L03 A;  5IMT D;  1VB0 A;  2MUP A;  1QKE A;  2H62 D;  1KBT A;  3EVS C;  2UX2 A;  5DO6 A;  2H7Z B;  1HAJ A;  4FAO E;  2MFA A;  4QTI U;  1CDQ A;  1HC9 A;  1IDI A;  1RGJ A;  1LXH A;  2J8B A;  2MHY A;  2QJA C;  2H8U A;  1CRE A;  1HOY A;  3U73 U;  1IDG A;  2QJB C;  2H64 C;  2QC1 A;  1FSS B;  3LAQ U;  5DU1 A;  2H64 B;  4OM4 A;  1RL5 A;  2LCR A;  2ERA A;  3QB4 B;  1F8U B;  3NH7 A;  1DRS A;  3VTS A;  2VLW A;  1COE A;  1LJZ A;  1LXG A;  3KFD I;  1HC9 B;  1IK8 A;  1FSC A;  2CRT A;  4BDT B;  4BIK B;  1KS6 A;  1CDT A;  1CHV S;  1NXB A;  1JGK A;  1KBA A;  1F94 A;  1CVO A;  4DO8 A;  3NDS A;  2OFS A;  2PJY C;  3ERA A;  1UG4 A;  1KBS A;  1CRF A;  4IYE A;  1BXP A;  1KU6 B;  2PJY B;  3HH7 A;  4EY8 B;  1TXB A;  1FF4 A;  2CDX A;  4FAO C;  1KTZ B;  1CXN A;  1KC4 A;  2CTX A;  1G6M A;  1NYS A;  1REW C;  1CDS A;  1B41 B;  1NTX A;  3KFD E;  2NBT A;  1TXA A;  2CRS A;  2K3G A;  4HQP F;  1QM7 A;  1TGX A;  4RUD A;  1H0J A;  1FRA A;  3U74 U;  1KL8 A;  3NEQ A;  2MUO A;  2HLR A;  1KXI A;  2I9B E;  2MJY A;  1W6B A;  4XJJ A;  1CDR A;  1I02 A;  2HLQ A;  2H5F A;  2MJ0 A;  1QKD A; 
#chains in the Genus database with same CATH topology
 4P7U A;  1ABT A;  1CB9 A;  4UY2 C;  2H62 C;  5IMY C;  1ZAD A;  3BT2 U;  3PLC A;  5DZ5 A;  1CCQ A;  1JBD A;  2MJ4 A;  1XT3 A;  1NEA A;  1CXO A;  1BTE A;  1M9Z A;  2BTX A;  2JQP A;  1FAS A;  1YWH A;  2GOO C;  2JVE A;  1MAH F;  2GOO B;  4OM5 A;  2BHI A;  1IJC A;  6EBX A;  1IDH A;  1MR6 A;  1ERG A;  1ERA A;  3BT1 U;  1PLO A;  2L5S A;  1JE9 A;  2LA1 A;  1IKC A;  1ONJ A;  1V6P A;  4LFT A;  2FD6 U;  3EBX A;  2QJ9 C;  1CTX A;  2UWR A;  1IDL A;  5EBX A;  1NOR A;  1LSI A;  1NTN A;  1KFH A;  1IQ9 A;  2X8B B;  1NYU A;  2CCX A;  1HAA A;  1LX5 B;  2H7Z A;  4AEA A;  1ES7 B;  1FFJ A;  4ZQY A;  3FEV A;  2ABX A;  1L4W A;  1TFS A;  1S4Y A;  2N99 A;  1COD A;  2L03 A;  5IMT D;  1VB0 A;  2MUP A;  1QKE A;  2H62 D;  1KBT A;  3EVS C;  2UX2 A;  5DO6 A;  2H7Z B;  1HAJ A;  4FAO E;  2MFA A;  4QTI U;  1CDQ A;  1HC9 A;  1IDI A;  1RGJ A;  1LXH A;  2J8B A;  2MHY A;  2QJA C;  2H8U A;  1CRE A;  1HOY A;  3U73 U;  1IDG A;  2QJB C;  2H64 C;  2QC1 A;  1FSS B;  3LAQ U;  5DU1 A;  4KSN A;  2H64 B;  4OM4 A;  1RL5 A;  2LCR A;  2ERA A;  3QB4 B;  1F8U B;  3NH7 A;  1DRS A;  3VTS A;  2VLW A;  1COE A;  1LJZ A;  1LXG A;  3KFD I;  1HC9 B;  1IK8 A;  1FSC A;  2CRT A;  4BDT B;  4BIK B;  1KS6 A;  1CDT A;  1CHV S;  1NXB A;  1JGK A;  1KBA A;  1F94 A;  1CVO A;  4DO8 A;  3NDS A;  2OFS A;  2PJY C;  3ERA A;  1UG4 A;  1KBS A;  1CRF A;  4IYE A;  1BXP A;  1KU6 B;  2PJY B;  3HH7 A;  4EY8 B;  1TXB A;  1FF4 A;  2CDX A;  4FAO C;  1KTZ B;  1CXN A;  1KC4 A;  2CTX A;  1G6M A;  1NYS A;  1REW C;  1CDS A;  1B41 B;  1NTX A;  3KFD E;  2NBT A;  1TXA A;  2CRS A;  2K3G A;  4HQP F;  1QM7 A;  1TGX A;  4RUD A;  1H0J A;  1FRA A;  3U74 U;  1KL8 A;  3NEQ A;  2MUO A;  2HLR A;  1KXI A;  2I9B E;  2MJY A;  1W6B A;  4XJJ A;  1CDR A;  1I02 A;  2HLQ A;  2H5F A;  2MJ0 A;  1QKD A; 
#chains in the Genus database with same CATH homology
 4P7U A;  1ABT A;  1CB9 A;  4UY2 C;  2H62 C;  5IMY C;  1ZAD A;  3BT2 U;  3PLC A;  5DZ5 A;  1CCQ A;  1JBD A;  2MJ4 A;  1XT3 A;  1NEA A;  1CXO A;  1BTE A;  1M9Z A;  2BTX A;  2JQP A;  1FAS A;  1YWH A;  2GOO C;  2JVE A;  1MAH F;  2GOO B;  4OM5 A;  2BHI A;  1IJC A;  6EBX A;  1IDH A;  1MR6 A;  1ERG A;  1ERA A;  3BT1 U;  1PLO A;  2L5S A;  1JE9 A;  2LA1 A;  1IKC A;  1ONJ A;  1V6P A;  4LFT A;  2FD6 U;  3EBX A;  2QJ9 C;  1CTX A;  2UWR A;  1IDL A;  5EBX A;  1NOR A;  1LSI A;  1NTN A;  1KFH A;  1IQ9 A;  2X8B B;  1NYU A;  2CCX A;  1HAA A;  1LX5 B;  2H7Z A;  4AEA A;  1ES7 B;  1FFJ A;  4ZQY A;  3FEV A;  2ABX A;  1L4W A;  1TFS A;  1S4Y A;  2N99 A;  1COD A;  2L03 A;  5IMT D;  1VB0 A;  2MUP A;  1QKE A;  2H62 D;  1KBT A;  3EVS C;  2UX2 A;  5DO6 A;  2H7Z B;  1HAJ A;  4FAO E;  2MFA A;  4QTI U;  1CDQ A;  1HC9 A;  1IDI A;  1RGJ A;  1LXH A;  2J8B A;  2MHY A;  2QJA C;  2H8U A;  1CRE A;  1HOY A;  3U73 U;  1IDG A;  2QJB C;  2H64 C;  2QC1 A;  1FSS B;  3LAQ U;  5DU1 A;  4KSN A;  2H64 B;  4OM4 A;  1RL5 A;  2LCR A;  2ERA A;  3QB4 B;  1F8U B;  3NH7 A;  1DRS A;  3VTS A;  2VLW A;  1COE A;  1LJZ A;  1LXG A;  3KFD I;  1HC9 B;  1IK8 A;  1FSC A;  2CRT A;  4BDT B;  4BIK B;  1KS6 A;  1CDT A;  1CHV S;  1NXB A;  1JGK A;  1KBA A;  1F94 A;  1CVO A;  4DO8 A;  3NDS A;  2OFS A;  2PJY C;  3ERA A;  1UG4 A;  1KBS A;  1CRF A;  4IYE A;  1BXP A;  1KU6 B;  2PJY B;  3HH7 A;  4EY8 B;  1TXB A;  1FF4 A;  2CDX A;  4FAO C;  1KTZ B;  1CXN A;  1KC4 A;  2CTX A;  1G6M A;  1NYS A;  1REW C;  1CDS A;  1B41 B;  1NTX A;  3KFD E;  2NBT A;  1TXA A;  2CRS A;  2K3G A;  4HQP F;  1QM7 A;  1TGX A;  4RUD A;  1H0J A;  1FRA A;  3U74 U;  1KL8 A;  3NEQ A;  2MUO A;  2HLR A;  1KXI A;  2I9B E;  2MJY A;  1W6B A;  4XJJ A;  1CDR A;  1I02 A;  2HLQ A;  2H5F A;  2MJ0 A;  1QKD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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