5IP7L

Structure of rna polymerase ii-tfg1 peptide complex
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
46
structure length
46
Chain Sequence
b'ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Transcription initiation complex structures elucidate DNA opening.
pubmed doi rcsb
molecule tags Transcription
total genus 4
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2016-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5ip7L00
2PMZP 4BY7L 2YU9L 3S2HL 4BBRL 1Y1WL 4X6AL 1TWAL 3HOVL 3HOWL 5M5YL 3GTPL 5C4JL 4Y7NL 3PO3L 1TWFL 3I4ML 3M4OL 3HOZL 3HOXL 3S1NL 3RZOL 4A3IL 2WAQP 3GTLL 4A3CL 4BXXL 4A3GL 2NVQL 4A93L 3S15L 4C2M1 5IYBL 5FLML 4AYBP 2E2HL 3I4NL 1TWHL 4BBSL 2JA6L 4A3EL 1TWGL 2JA8L 3GTML 3PO2L 3GTQL 3S16L 2E2IL 2VUML 1I50L 4A3ML 3S1ML 1K83L 3CQZL 3GTJL 5IP9L 2WB1P 2R7ZL 3H0GL 1WCML 5M5XL 2E2JL 2NVYL 3M3YL 2JA5L 3GTKL 4C3HL 4QIWP 5C3EL 4BY1L 3H3VM 5C44L 2Y0SP 1Y1VL 4A3BL 4A3JL 4A3KL 2R92L 3FKIL 2R93L 4Y52L 3GTOL 2JA7L 2NVTL 1I3QL 5IP7L 1I6HL 3HKZP 4C3IL 5C4XL 3S1RL 3S17L 4A3LL 5M5WL 1R9TL 3RZDL 4A3DL 3HOUL 5M3FL 5IYDL 5FJ8L 3GTGL 2NVXL 2B63L 1TWCL 1SFOL 3S14L 4C3JL 3K7AL 3HOYL 5IYCL 4A3FL 3S2DL 5M3ML 3S1QL
chains in the Genus database with same CATH superfamily
2XJRA 4X6AL 1Z92B 3PO3L 1T9QA 3I4ML 5AI2A 3MSUA 8RXNA 3H9BA 3PIP1 4A3CL 2APOB 1VZIA 2XJVA 1S2ZA 4C2M1 3FDJA 2HVYC 2AQCA 3I4NL 1TWHL 1VZHA 2A68D 5EIOC 1TWGL 4AR5A 4U671 1R0FA 2A6ED 7RXNA 2E2IL 2XJQA 1ODHA 4AI3A 1IU5A 4AR4A 2WB1P 2L0ZA 5M5XL 2RDVA 1E8JA 3QQCE 4XXBB 1T9OA 4A3JL 3WWNB 2XJSA 3RZTA 4RXNA 2R93L 1CAAA 2JA7L 5IP7L 1LKMA 4POGA 1I6HL 6RXNA 3S1RL 1SMMA 3S17L 3HOUL 2PVEA 2QL0A 5GAGc 1QQTA 1PZXA 2KKDA 1YUXA 4AHZA 3P2AA 2XJUA 5DM71 5M3ML 2V0EA 4JAGA 3PL5A 1Y1WL 3HOWL 5M5YL 5C4JL 4Y7NL 3M4OL 3HOXL 3S1NL 3GTLL 1BFYA 1YK5A 3H9CA 5MF6A 4BXXL 4G6BA 1FHHA 1RYQA 3LWOB 4AYBP 4AR3A 5GAHc 5H1Sc 1PFYA 2Z3QB 1BE7A 5EINC 1PFVA 3HJWB 3GTQL 4JAFA 5MFZA 1NXEA 1VCXA 4TVMA 3S1ML 1K83L 3CQZL 4TPUA 5MFPA 3SS2A 5IP9L 1WCML 3PIO1 2NVYL 2BE5D 3M3YL 2JA5L 2C6BA 4AI0A 1YUZA 1ZRPA 4AHYA 5GADc 2V0FA 4YWLA 1Y1VL 5JVH1 4A3BL 1R0IA 2JI3A 1NNQA 1BQ9A 2NVTL 1B2OA 4LHLA 2VL6A 4C3IL 4LHNA 2LCQA 4A3LL 2PSMC 5K2ME 2Z3RB 1C09A 3LWVB 2A69D 4AI2A 2AYJA 5FJ8L 3GTGL 2M4YA 1RDGA 2PPTA 2NVXL 3MQKB 1SFOL 2CKAA 3S14L 1VZGA 4AI1A 1DVBA 2HR5A 3HOYL 1RB9A 5MGNA 4A3FL 4WFN1 2PMZP 4BY7L 1TWAL 5JVG1 3HOVL 3LWPB 1LKOA 4JAEA 3P8BA 3KYWA 3HOZL 4A3IL 2PYAA 5AN9H 4A3GL 4V196 2NVQL 3IU3I 3S15L 2DSXA 3H97A 1IW7D 1YV1A 2E2HL 2RFKB 4UY81 1T9PA 2B5ID 2CR8A 1PFUA 4XGHA 4B8CD 1R0HA 1FHMA 2CKCA 3PO2L 4K9FA 3S16L 4A3ML 2PVXA 2M6OA 3JR7A 1LKPA 3GTJL 1RWDA 3QVDA 1S30A 3H0GL 4AHWA 2E2JL 1H7VA 3KYUA 3NFPI 4C3HL 4QIWP 5C3EL 2J9UB 1P7PA 1B71A 5C44L 1WJVA 2R92L 1S24A 3VPBE 1YK4A 2M4VA 4Y52L 3MPSA 1DX8A 5C4XL 3LWRB 5M5WL 1R9TL 4A3DL 2O5JD 5M3FL 4ZN1B 2C6AA 4E6YA 2B63L 3HAXC 1TWCL 3K7AL 1NXGA 3RZ6A 2V3BB 3RYGA 3S2DL 1SMUA 3S1QL 2YU9L 3S2HL 4JADA 4BBRL 1R0GA 2ERJA 2EY4E 3A44A 4POFA 3GTPL 4GS7D 1CADA 1TWFL 1QCVA 3RZOL 2WAQP 1R0JA 3B0AB 3ZG6A 3B08B 4A93L 3LNLA 3WWLA 5IYBL 1JYBA 2XJPA 3H99A 5FLML 4ME3A 3K35A 5IY0A 2ZIXA 1B2JA 3PKJA 4BBSL 2JA6L 2KN9A 4A3EL 1LTLA 2AUSB 2JA8L 3GTML 3J7Z1 5RXNA 1IROA 5DM61 1OWCA 3PWFA 2XJTA 2VUML 1I50L 1RYTA 2R7ZL 2ERSA 5AI3A 3KYVA 5MLC3 5GAEc 3GTKL 1BRFA 2NYDA 4BY1L 3H3VM 2H12A 2Y0SP 2A6HD 4A3KL 3FKIL 3LPEB 1SMWA 2M6PA 1QYBA 1BQ8A 3GTOL 1I3QL 4YWMA 2MS3A 3HKZP 2K2DA 1IRNA 4AR6A 3PKIA 4AHXA 3RZDL 4ZN3B 2GMGA 3KYXA 5IYDL 3LWQB 3KYYA 1B13A 2JI2A 1OWBA 3PZAA 4C3JL 1IU6A 2JI1A 1PFWA 5IYCL 3HJYB 1RDVA 1F4LA 3J7Y1
chains in the Genus database with same CATH topology
2PMZP 4BY7L 2YU9L 3S2HL 4BBRL 1Y1WL 4X6AL 1TWAL 3HOVL 3HOWL 5M5YL 3GTPL 5C4JL 4Y7NL 3PO3L 1TWFL 3I4ML 3M4OL 3HOZL 3HOXL 3S1NL 3RZOL 4A3IL 2WAQP 3GTLL 4A3CL 4BXXL 4A3GL 2NVQL 4A93L 3S15L 4C2M1 5IYBL 5FLML 4AYBP 2E2HL 3I4NL 1TWHL 4BBSL 2JA6L 4A3EL 1TWGL 2JA8L 3GTML 3PO2L 3GTQL 3S16L 2E2IL 2VUML 1I50L 4A3ML 3S1ML 1K83L 3CQZL 3GTJL 5IP9L 2WB1P 2R7ZL 3H0GL 1WCML 5M5XL 2E2JL 2NVYL 3M3YL 2JA5L 3GTKL 4C3HL 4QIWP 5C3EL 4BY1L 3H3VM 5C44L 2Y0SP 1Y1VL 4A3BL 4A3JL 4A3KL 2R92L 3FKIL 2R93L 4Y52L 3GTOL 2JA7L 2NVTL 1I3QL 5IP7L 1I6HL 3HKZP 4C3IL 5C4XL 3S1RL 3S17L 4A3LL 5M5WL 1R9TL 3RZDL 4A3DL 3HOUL 5M3FL 5IYDL 5FJ8L 3GTGL 2NVXL 2B63L 1TWCL 1SFOL 3S14L 4C3JL 3K7AL 3HOYL 5IYCL 4A3FL 3S2DL 5M3ML 3S1QL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PMZ P;  4BY7 L;  2YU9 L;  3S2H L;  4BBR L;  1Y1W L;  4X6A L;  1TWA L;  3HOV L;  3HOW L;  5M5Y L;  3GTP L;  5C4J L;  4Y7N L;  3PO3 L;  1TWF L;  3I4M L;  3M4O L;  3HOZ L;  3HOX L;  3S1N L;  3RZO L;  4A3I L;  2WAQ P;  3GTL L;  4A3C L;  4BXX L;  4A3G L;  2NVQ L;  4A93 L;  3S15 L;  4C2M 1;  5IYB L;  5FLM L;  4AYB P;  2E2H L;  3I4N L;  1TWH L;  4BBS L;  2JA6 L;  4A3E L;  1TWG L;  2JA8 L;  3GTM L;  3PO2 L;  3GTQ L;  3S16 L;  2E2I L;  2VUM L;  1I50 L;  4A3M L;  3S1M L;  1K83 L;  3CQZ L;  3GTJ L;  5IP9 L;  2WB1 P;  2R7Z L;  3H0G L;  1WCM L;  5M5X L;  2E2J L;  2NVY L;  3M3Y L;  2JA5 L;  3GTK L;  4C3H L;  4QIW P;  5C3E L;  4BY1 L;  3H3V M;  5C44 L;  2Y0S P;  1Y1V L;  4A3B L;  4A3J L;  4A3K L;  2R92 L;  3FKI L;  2R93 L;  4Y52 L;  3GTO L;  2JA7 L;  2NVT L;  1I3Q L;  5IP7 L;  1I6H L;  3HKZ P;  4C3I L;  5C4X L;  3S1R L;  3S17 L;  4A3L L;  5M5W L;  1R9T L;  3RZD L;  4A3D L;  3HOU L;  5M3F L;  5IYD L;  5FJ8 L;  3GTG L;  2NVX L;  2B63 L;  1TWC L;  1SFO L;  3S14 L;  4C3J L;  3K7A L;  3HOY L;  5IYC L;  4A3F L;  3S2D L;  5M3M L;  3S1Q L; 
#chains in the Genus database with same CATH topology
 2XJR A;  4X6A L;  1Z92 B;  3PO3 L;  1T9Q A;  3I4M L;  5AI2 A;  3MSU A;  8RXN A;  3H9B A;  3PIP 1;  4A3C L;  2APO B;  1VZI A;  2XJV A;  1S2Z A;  4C2M 1;  3FDJ A;  2HVY C;  2AQC A;  3I4N L;  1TWH L;  1VZH A;  2A68 D;  5EIO C;  1TWG L;  4AR5 A;  4U67 1;  1R0F A;  2A6E D;  7RXN A;  2E2I L;  2XJQ A;  1ODH A;  4AI3 A;  1IU5 A;  4AR4 A;  2WB1 P;  2L0Z A;  5M5X L;  2RDV A;  1E8J A;  3QQC E;  4XXB B;  1T9O A;  4A3J L;  3WWN B;  2XJS A;  3RZT A;  4RXN A;  2R93 L;  1CAA A;  2JA7 L;  5IP7 L;  1LKM A;  4POG A;  1I6H L;  6RXN A;  3S1R L;  1SMM A;  3S17 L;  3HOU L;  2PVE A;  2QL0 A;  5GAG c;  1QQT A;  1PZX A;  2KKD A;  1YUX A;  4AHZ A;  3P2A A;  2XJU A;  5DM7 1;  5M3M L;  2V0E A;  4JAG A;  3PL5 A;  1Y1W L;  3HOW L;  5M5Y L;  5C4J L;  4Y7N L;  3M4O L;  3HOX L;  3S1N L;  3GTL L;  1BFY A;  1YK5 A;  3H9C A;  5MF6 A;  4BXX L;  4G6B A;  1FHH A;  1RYQ A;  3LWO B;  4AYB P;  4AR3 A;  5GAH c;  5H1S c;  1PFY A;  2Z3Q B;  1BE7 A;  5EIN C;  1PFV A;  3HJW B;  3GTQ L;  4JAF A;  5MFZ A;  1NXE A;  1VCX A;  4TVM A;  3S1M L;  1K83 L;  3CQZ L;  4TPU A;  5MFP A;  3SS2 A;  5IP9 L;  1WCM L;  3PIO 1;  2NVY L;  2BE5 D;  3M3Y L;  2JA5 L;  2C6B A;  4AI0 A;  1YUZ A;  1ZRP A;  4AHY A;  5GAD c;  2V0F A;  4YWL A;  1Y1V L;  5JVH 1;  4A3B L;  1R0I A;  2JI3 A;  1NNQ A;  1BQ9 A;  2NVT L;  1B2O A;  4LHL A;  2VL6 A;  4C3I L;  4LHN A;  2LCQ A;  4A3L L;  2PSM C;  5K2M E;  2Z3R B;  1C09 A;  3LWV B;  2A69 D;  4AI2 A;  2AYJ A;  5FJ8 L;  3GTG L;  2M4Y A;  1RDG A;  2PPT A;  2NVX L;  3MQK B;  1SFO L;  2CKA A;  3S14 L;  1VZG A;  4AI1 A;  1DVB A;  2HR5 A;  3HOY L;  1RB9 A;  5MGN A;  4A3F L;  4WFN 1;  2PMZ P;  4BY7 L;  1TWA L;  5JVG 1;  3HOV L;  3LWP B;  1LKO A;  4JAE A;  3P8B A;  3KYW A;  3HOZ L;  4A3I L;  2PYA A;  5AN9 H;  4A3G L;  4V19 6;  2NVQ L;  3IU3 I;  3S15 L;  2DSX A;  3H97 A;  1IW7 D;  1YV1 A;  2E2H L;  2RFK B;  4UY8 1;  1T9P A;  2B5I D;  2CR8 A;  1PFU A;  4XGH A;  4B8C D;  1R0H A;  1FHM A;  2CKC A;  3PO2 L;  4K9F A;  3S16 L;  4A3M L;  2PVX A;  2M6O A;  3JR7 A;  1LKP A;  3GTJ L;  1RWD A;  3QVD A;  1S30 A;  3H0G L;  4AHW A;  2E2J L;  1H7V A;  3KYU A;  3NFP I;  4C3H L;  4QIW P;  5C3E L;  2J9U B;  1P7P A;  1B71 A;  5C44 L;  1WJV A;  2R92 L;  1S24 A;  3VPB E;  1YK4 A;  2M4V A;  4Y52 L;  3MPS A;  1DX8 A;  5C4X L;  3LWR B;  5M5W L;  1R9T L;  4A3D L;  2O5J D;  5M3F L;  4ZN1 B;  2C6A A;  4E6Y A;  2B63 L;  3HAX C;  1TWC L;  3K7A L;  1NXG A;  3RZ6 A;  2V3B B;  3RYG A;  3S2D L;  1SMU A;  3S1Q L;  2YU9 L;  3S2H L;  4JAD A;  4BBR L;  1R0G A;  2ERJ A;  2EY4 E;  3A44 A;  4POF A;  3GTP L;  4GS7 D;  1CAD A;  1TWF L;  1QCV A;  3RZO L;  2WAQ P;  1R0J A;  3B0A B;  3ZG6 A;  3B08 B;  4A93 L;  3LNL A;  3WWL A;  5IYB L;  1JYB A;  2XJP A;  3H99 A;  5FLM L;  4ME3 A;  3K35 A;  5IY0 A;  2ZIX A;  1B2J A;  3PKJ A;  4BBS L;  2JA6 L;  2KN9 A;  4A3E L;  1LTL A;  2AUS B;  2JA8 L;  3GTM L;  3J7Z 1;  5RXN A;  1IRO A;  5DM6 1;  1OWC A;  3PWF A;  2XJT A;  2VUM L;  1I50 L;  1RYT A;  2R7Z L;  2ERS A;  5AI3 A;  3KYV A;  5MLC 3;  5GAE c;  3GTK L;  1BRF A;  2NYD A;  4BY1 L;  3H3V M;  2H12 A;  2Y0S P;  2A6H D;  4A3K L;  3FKI L;  3LPE B;  1SMW A;  2M6P A;  1QYB A;  1BQ8 A;  3GTO L;  1I3Q L;  4YWM A;  2MS3 A;  3HKZ P;  2K2D A;  1IRN A;  4AR6 A;  3PKI A;  4AHX A;  3RZD L;  4ZN3 B;  2GMG A;  3KYX A;  5IYD L;  3LWQ B;  3KYY A;  1B13 A;  2JI2 A;  1OWB A;  3PZA A;  4C3J L;  1IU6 A;  2JI1 A;  1PFW A;  5IYC L;  3HJY B;  1RDV A;  1F4L A;  3J7Y 1; 
#chains in the Genus database with same CATH homology
 2PMZ P;  4BY7 L;  2YU9 L;  3S2H L;  4BBR L;  1Y1W L;  4X6A L;  1TWA L;  3HOV L;  3HOW L;  5M5Y L;  3GTP L;  5C4J L;  4Y7N L;  3PO3 L;  1TWF L;  3I4M L;  3M4O L;  3HOZ L;  3HOX L;  3S1N L;  3RZO L;  4A3I L;  2WAQ P;  3GTL L;  4A3C L;  4BXX L;  4A3G L;  2NVQ L;  4A93 L;  3S15 L;  4C2M 1;  5IYB L;  5FLM L;  4AYB P;  2E2H L;  3I4N L;  1TWH L;  4BBS L;  2JA6 L;  4A3E L;  1TWG L;  2JA8 L;  3GTM L;  3PO2 L;  3GTQ L;  3S16 L;  2E2I L;  2VUM L;  1I50 L;  4A3M L;  3S1M L;  1K83 L;  3CQZ L;  3GTJ L;  5IP9 L;  2WB1 P;  2R7Z L;  3H0G L;  1WCM L;  5M5X L;  2E2J L;  2NVY L;  3M3Y L;  2JA5 L;  3GTK L;  4C3H L;  4QIW P;  5C3E L;  4BY1 L;  3H3V M;  5C44 L;  2Y0S P;  1Y1V L;  4A3B L;  4A3J L;  4A3K L;  2R92 L;  3FKI L;  2R93 L;  4Y52 L;  3GTO L;  2JA7 L;  2NVT L;  1I3Q L;  5IP7 L;  1I6H L;  3HKZ P;  4C3I L;  5C4X L;  3S1R L;  3S17 L;  4A3L L;  5M5W L;  1R9T L;  3RZD L;  4A3D L;  3HOU L;  5M3F L;  5IYD L;  5FJ8 L;  3GTG L;  2NVX L;  2B63 L;  1TWC L;  1SFO L;  3S14 L;  4C3J L;  3K7A L;  3HOY L;  5IYC L;  4A3F L;  3S2D L;  5M3M L;  3S1Q L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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