5IP7L

Structure of rna polymerase ii-tfg1 peptide complex
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Transcription initiation complex structures elucidate DNA opening.
pubmed doi rcsb
molecule tags Transcription
total genus 4
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2016-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 5ip7L00
2NVTL 4A3EL 3GTOL 2WAQP 3HKZP 3PO2L 4BXXL 1I50L 5IYBL 3GTKL 2NVXL 2R93L 2WB1P 5M5YL 1Y1WL 3GTML 5IP9L 1SFOL 2PMZP 4X6AL 3GTPL 4A3GL 1TWFL 5M3ML 3GTJL 4A3KL 2JA5L 4Y7NL 3RZOL 2YU9L 4Y52L 4C3HL 3S14L 4BY1L 2JA7L 5M3FL 4BBSL 1TWCL 3H0GL 2B63L 1TWAL 4C3JL 2E2JL 5IYDL 5C4JL 2Y0SP 2R7ZL 2E2HL 2E2IL 3FKIL 3S17L 2JA6L 3I4NL 3GTGL 3S15L 3HOWL 5C44L 1WCML 5IYCL 3CQZL 4C3IL 1I6HL 1K83L 1I3QL 4QIWP 4BY7L 4A3FL 3S2HL 4A3JL 1R9TL 5C4XL 4A3LL 1TWGL 1TWHL 3GTLL 3M3YL 3S2DL 5M5XL 3S1ML 4A3CL 2VUML 3HOZL 4A93L 5FJ8L 4A3IL 2R92L 3M4OL 4A3BL 2NVQL 3K7AL 2NVYL 3I4ML 3HOUL 3S1QL 2JA8L 3H3VM 5M5WL 4AYBP 3S16L 4A3DL 4A3ML 3HOYL 5C3EL 3RZDL 5FLML 3PO3L 3GTQL 1Y1VL 4C2M1 3S1RL 3HOXL 3HOVL 5IP7L 3S1NL 4BBRL
chains in the Genus database with same CATH superfamily
1R0HA 1ZRPA 1RYTA 2JI3A 2Z3QB 3GTOL 1YUZA 1R0GA 1PFYA 5GADc 2RDVA 3WWLA 1NXEA 1Z92B 5K2ME 3RZTA 2LCQA 2ZIXA 3J7Y1 3LWQB 4UY81 4WFN1 1B13A 3LPEB 3GTML 5EINC 1OWCA 4X6AL 3GTPL 1DVBA 2EY4E 5M3ML 3GTJL 1T9OA 3LWOB 2PVEA 2HR5A 1CAAA 2H12A 1JYBA 1QYBA 3HJWB 4BBSL 1TWCL 3FDJA 2B5ID 1B2OA 2R7ZL 1LKOA 2E2IL 4YWMA 1YK4A 3I4NL 4LHLA 5C44L 4ZN3B 3PKJA 1I3QL 4QIWP 4JAEA 4K9FA 1YUXA 4E6YA 2BE5D 5MF6A 2CKAA 1TWGL 3VPBE 2C6BA 4XGHA 5MFPA 3P2AA 1IU5A 2KN9A 3M4OL 1LKPA 4TPUA 5IY0A 3K7AL 2GMGA 3A44A 5H1Sc 3HOUL 2JA8L 5M5WL 4A3DL 5DM61 2PPTA 3PO3L 1OWBA 3LWPB 4C2M1 3JR7A 5AI3A 4AHXA 5IP7L 3LNLA 3S1NL 4AI2A 4A3EL 2KKDA 2WAQP 3MQKB 5JVG1 3PO2L 5DM71 2ERSA 3LWVB 1VZGA 4AR4A 3PIP1 5M5YL 2J9UB 3KYXA 3B08B 2QL0A 4AR3A 1DX8A 2JA5L 4Y7NL 2M4YA 2APOB 2ERJA 5MGNA 3RZOL 3S14L 1F4LA 2PVXA 3H0GL 1PZXA 3PL5A 3KYVA 2Y0SP 3H9BA 3FKIL 7RXNA 3MSUA 3GTGL 4JAGA 3HOWL 4C3IL 3PKIA 1FHMA 4ZN1B 3S2HL 4YWLA 4B8CD 1TWHL 2RFKB 3M3YL 3S2DL 1SMMA 1P7PA 5M5XL 2A69D 1S30A 3RZ6A 4A3CL 3QVDA 2VUML 5AI2A 3HOZL 5FJ8L 4A3BL 1PFUA 3LWRB 1ODHA 4AI0A 3RYGA 2XJSA 3H3VM 1BQ8A 5EIOC 1B71A 4LHNA 1YV1A 3HOYL 4XXBB 5FLML 1IW7D 4AHZA 1RDGA 4AI1A 4BBRL 2A6ED 5MLC3 2NVTL 3H97A 1PFWA 2M6PA 3HKZP 1E8JA 2V0FA 5IYBL 3GTKL 2JI2A 4AR5A 4POGA 2PSMC 1IRNA 2XJVA 2CR8A 2WB1P 4AR6A 4ME3A 4AHWA 1Y1WL 1SFOL 2PMZP 1BFYA 4A3GL 3HAXC 1TWFL 1QQTA 5MFZA 2YU9L 3WWNB 1IROA 4Y52L 3PWFA 4C3HL 4BY1L 2JA7L 1NXGA 2K2DA 2V0EA 2M6OA 2B63L 5C4JL 5RXNA 6RXNA 3S17L 3H9CA 2JA6L 1WCML 1WJVA 3CQZL 1SMWA 1K83L 4A3FL 5JVH1 1YK5A 4U671 5C4XL 4A3LL 4AI3A 2XJPA 2XJUA 2M4VA 4V196 2R92L 2V3BB 1SMUA 2JI1A 2NVYL 2PYAA 3I4ML 1FHHA 1R0JA 3PIO1 1T9QA 3HJYB 4POFA 3KYYA 5C3EL 2XJRA 1RDVA 1RYQA 1Y1VL 3HOXL 3HOVL 3KYWA 1BE7A 2XJTA 3K35A 1S24A 4BXXL 1I50L 2NVXL 1B2JA 1BRFA 3PZAA 1R0FA 2R93L 4RXNA 1LKMA 2L0ZA 8RXNA 1BQ9A 5IP9L 2VL6A 1VZIA 2O5JD 1R0IA 4A3KL 2A68D 1C09A 1RB9A 5GAHc 4TVMA 4G6BA 3ZG6A 4JAFA 5M3FL 2C6AA 2A6HD 2NYDA 1TWAL 4C3JL 2E2JL 5IYDL 2DSXA 2E2HL 2HVYC 1VCXA 1NNQA 1RWDA 3J7Z1 3S15L 5IYCL 1I6HL 2AYJA 4BY7L 2MS3A 1VZHA 4AHYA 2XJQA 4A3JL 1R9TL 3P8BA 5GAGc 3GTLL 1CADA 3S1ML 3MPSA 1QCVA 1H7VA 4A93L 4A3IL 5AN9H 5GAEc 2NVQL 3H99A 1LTLA 1PFVA 3IU3I 3S1QL 2AUSB 3NFPI 2AQCA 2Z3RB 3S16L 4AYBP 2CKCA 3KYUA 3SS2A 4A3ML 1IU6A 3RZDL 1S2ZA 3GTQL 3S1RL 4GS7D 3QQCE 3B0AB 1T9PA 4JADA
chains in the Genus database with same CATH topology
2NVTL 4A3EL 3GTOL 2WAQP 3HKZP 3PO2L 4BXXL 1I50L 5IYBL 3GTKL 2NVXL 2R93L 2WB1P 5M5YL 1Y1WL 3GTML 5IP9L 1SFOL 2PMZP 4X6AL 3GTPL 4A3GL 1TWFL 5M3ML 3GTJL 4A3KL 2JA5L 4Y7NL 3RZOL 2YU9L 4Y52L 4C3HL 3S14L 4BY1L 2JA7L 5M3FL 4BBSL 1TWCL 3H0GL 2B63L 1TWAL 4C3JL 2E2JL 5IYDL 5C4JL 2Y0SP 2R7ZL 2E2HL 2E2IL 3FKIL 3S17L 2JA6L 3I4NL 3GTGL 3S15L 3HOWL 5C44L 1WCML 5IYCL 3CQZL 4C3IL 1I6HL 1K83L 1I3QL 4QIWP 4BY7L 4A3FL 3S2HL 4A3JL 1R9TL 5C4XL 4A3LL 1TWGL 1TWHL 3GTLL 3M3YL 3S2DL 5M5XL 3S1ML 4A3CL 2VUML 3HOZL 4A93L 5FJ8L 4A3IL 2R92L 3M4OL 4A3BL 2NVQL 3K7AL 2NVYL 3I4ML 3HOUL 3S1QL 2JA8L 3H3VM 5M5WL 4AYBP 3S16L 4A3DL 4A3ML 3HOYL 5C3EL 3RZDL 5FLML 3PO3L 3GTQL 1Y1VL 4C2M1 3S1RL 3HOXL 3HOVL 5IP7L 3S1NL 4BBRL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NVT L;  4A3E L;  3GTO L;  2WAQ P;  3HKZ P;  3PO2 L;  4BXX L;  1I50 L;  5IYB L;  3GTK L;  2NVX L;  2R93 L;  2WB1 P;  5M5Y L;  1Y1W L;  3GTM L;  5IP9 L;  1SFO L;  2PMZ P;  4X6A L;  3GTP L;  4A3G L;  1TWF L;  5M3M L;  3GTJ L;  4A3K L;  2JA5 L;  4Y7N L;  3RZO L;  2YU9 L;  4Y52 L;  4C3H L;  3S14 L;  4BY1 L;  2JA7 L;  5M3F L;  4BBS L;  1TWC L;  3H0G L;  2B63 L;  1TWA L;  4C3J L;  2E2J L;  5IYD L;  5C4J L;  2Y0S P;  2R7Z L;  2E2H L;  2E2I L;  3FKI L;  3S17 L;  2JA6 L;  3I4N L;  3GTG L;  3S15 L;  3HOW L;  5C44 L;  1WCM L;  5IYC L;  3CQZ L;  4C3I L;  1I6H L;  1K83 L;  1I3Q L;  4QIW P;  4BY7 L;  4A3F L;  3S2H L;  4A3J L;  1R9T L;  5C4X L;  4A3L L;  1TWG L;  1TWH L;  3GTL L;  3M3Y L;  3S2D L;  5M5X L;  3S1M L;  4A3C L;  2VUM L;  3HOZ L;  4A93 L;  5FJ8 L;  4A3I L;  2R92 L;  3M4O L;  4A3B L;  2NVQ L;  3K7A L;  2NVY L;  3I4M L;  3HOU L;  3S1Q L;  2JA8 L;  3H3V M;  5M5W L;  4AYB P;  3S16 L;  4A3D L;  4A3M L;  3HOY L;  5C3E L;  3RZD L;  5FLM L;  3PO3 L;  3GTQ L;  1Y1V L;  4C2M 1;  3S1R L;  3HOX L;  3HOV L;  5IP7 L;  3S1N L;  4BBR L; 
#chains in the Genus database with same CATH topology
 1R0H A;  1ZRP A;  1RYT A;  2JI3 A;  2Z3Q B;  3GTO L;  1YUZ A;  1R0G A;  1PFY A;  5GAD c;  2RDV A;  3WWL A;  1NXE A;  1Z92 B;  5K2M E;  3RZT A;  2LCQ A;  2ZIX A;  3J7Y 1;  3LWQ B;  4UY8 1;  4WFN 1;  1B13 A;  3LPE B;  3GTM L;  5EIN C;  1OWC A;  4X6A L;  3GTP L;  1DVB A;  2EY4 E;  5M3M L;  3GTJ L;  1T9O A;  3LWO B;  2PVE A;  2HR5 A;  1CAA A;  2H12 A;  1JYB A;  1QYB A;  3HJW B;  4BBS L;  1TWC L;  3FDJ A;  2B5I D;  1B2O A;  2R7Z L;  1LKO A;  2E2I L;  4YWM A;  1YK4 A;  3I4N L;  4LHL A;  5C44 L;  4ZN3 B;  3PKJ A;  1I3Q L;  4QIW P;  4JAE A;  4K9F A;  1YUX A;  4E6Y A;  2BE5 D;  5MF6 A;  2CKA A;  1TWG L;  3VPB E;  2C6B A;  4XGH A;  5MFP A;  3P2A A;  1IU5 A;  2KN9 A;  3M4O L;  1LKP A;  4TPU A;  5IY0 A;  3K7A L;  2GMG A;  3A44 A;  5H1S c;  3HOU L;  2JA8 L;  5M5W L;  4A3D L;  5DM6 1;  2PPT A;  3PO3 L;  1OWB A;  3LWP B;  4C2M 1;  3JR7 A;  5AI3 A;  4AHX A;  5IP7 L;  3LNL A;  3S1N L;  4AI2 A;  4A3E L;  2KKD A;  2WAQ P;  3MQK B;  5JVG 1;  3PO2 L;  5DM7 1;  2ERS A;  3LWV B;  1VZG A;  4AR4 A;  3PIP 1;  5M5Y L;  2J9U B;  3KYX A;  3B08 B;  2QL0 A;  4AR3 A;  1DX8 A;  2JA5 L;  4Y7N L;  2M4Y A;  2APO B;  2ERJ A;  5MGN A;  3RZO L;  3S14 L;  1F4L A;  2PVX A;  3H0G L;  1PZX A;  3PL5 A;  3KYV A;  2Y0S P;  3H9B A;  3FKI L;  7RXN A;  3MSU A;  3GTG L;  4JAG A;  3HOW L;  4C3I L;  3PKI A;  1FHM A;  4ZN1 B;  3S2H L;  4YWL A;  4B8C D;  1TWH L;  2RFK B;  3M3Y L;  3S2D L;  1SMM A;  1P7P A;  5M5X L;  2A69 D;  1S30 A;  3RZ6 A;  4A3C L;  3QVD A;  2VUM L;  5AI2 A;  3HOZ L;  5FJ8 L;  4A3B L;  1PFU A;  3LWR B;  1ODH A;  4AI0 A;  3RYG A;  2XJS A;  3H3V M;  1BQ8 A;  5EIO C;  1B71 A;  4LHN A;  1YV1 A;  3HOY L;  4XXB B;  5FLM L;  1IW7 D;  4AHZ A;  1RDG A;  4AI1 A;  4BBR L;  2A6E D;  5MLC 3;  2NVT L;  3H97 A;  1PFW A;  2M6P A;  3HKZ P;  1E8J A;  2V0F A;  5IYB L;  3GTK L;  2JI2 A;  4AR5 A;  4POG A;  2PSM C;  1IRN A;  2XJV A;  2CR8 A;  2WB1 P;  4AR6 A;  4ME3 A;  4AHW A;  1Y1W L;  1SFO L;  2PMZ P;  1BFY A;  4A3G L;  3HAX C;  1TWF L;  1QQT A;  5MFZ A;  2YU9 L;  3WWN B;  1IRO A;  4Y52 L;  3PWF A;  4C3H L;  4BY1 L;  2JA7 L;  1NXG A;  2K2D A;  2V0E A;  2M6O A;  2B63 L;  5C4J L;  5RXN A;  6RXN A;  3S17 L;  3H9C A;  2JA6 L;  1WCM L;  1WJV A;  3CQZ L;  1SMW A;  1K83 L;  4A3F L;  5JVH 1;  1YK5 A;  4U67 1;  5C4X L;  4A3L L;  4AI3 A;  2XJP A;  2XJU A;  2M4V A;  4V19 6;  2R92 L;  2V3B B;  1SMU A;  2JI1 A;  2NVY L;  2PYA A;  3I4M L;  1FHH A;  1R0J A;  3PIO 1;  1T9Q A;  3HJY B;  4POF A;  3KYY A;  5C3E L;  2XJR A;  1RDV A;  1RYQ A;  1Y1V L;  3HOX L;  3HOV L;  3KYW A;  1BE7 A;  2XJT A;  3K35 A;  1S24 A;  4BXX L;  1I50 L;  2NVX L;  1B2J A;  1BRF A;  3PZA A;  1R0F A;  2R93 L;  4RXN A;  1LKM A;  2L0Z A;  8RXN A;  1BQ9 A;  5IP9 L;  2VL6 A;  1VZI A;  2O5J D;  1R0I A;  4A3K L;  2A68 D;  1C09 A;  1RB9 A;  5GAH c;  4TVM A;  4G6B A;  3ZG6 A;  4JAF A;  5M3F L;  2C6A A;  2A6H D;  2NYD A;  1TWA L;  4C3J L;  2E2J L;  5IYD L;  2DSX A;  2E2H L;  2HVY C;  1VCX A;  1NNQ A;  1RWD A;  3J7Z 1;  3S15 L;  5IYC L;  1I6H L;  2AYJ A;  4BY7 L;  2MS3 A;  1VZH A;  4AHY A;  2XJQ A;  4A3J L;  1R9T L;  3P8B A;  5GAG c;  3GTL L;  1CAD A;  3S1M L;  3MPS A;  1QCV A;  1H7V A;  4A93 L;  4A3I L;  5AN9 H;  5GAE c;  2NVQ L;  3H99 A;  1LTL A;  1PFV A;  3IU3 I;  3S1Q L;  2AUS B;  3NFP I;  2AQC A;  2Z3R B;  3S16 L;  4AYB P;  2CKC A;  3KYU A;  3SS2 A;  4A3M L;  1IU6 A;  3RZD L;  1S2Z A;  3GTQ L;  3S1R L;  4GS7 D;  3QQC E;  3B0A B;  1T9P A;  4JAD A; 
#chains in the Genus database with same CATH homology
 2NVT L;  4A3E L;  3GTO L;  2WAQ P;  3HKZ P;  3PO2 L;  4BXX L;  1I50 L;  5IYB L;  3GTK L;  2NVX L;  2R93 L;  2WB1 P;  5M5Y L;  1Y1W L;  3GTM L;  5IP9 L;  1SFO L;  2PMZ P;  4X6A L;  3GTP L;  4A3G L;  1TWF L;  5M3M L;  3GTJ L;  4A3K L;  2JA5 L;  4Y7N L;  3RZO L;  2YU9 L;  4Y52 L;  4C3H L;  3S14 L;  4BY1 L;  2JA7 L;  5M3F L;  4BBS L;  1TWC L;  3H0G L;  2B63 L;  1TWA L;  4C3J L;  2E2J L;  5IYD L;  5C4J L;  2Y0S P;  2R7Z L;  2E2H L;  2E2I L;  3FKI L;  3S17 L;  2JA6 L;  3I4N L;  3GTG L;  3S15 L;  3HOW L;  5C44 L;  1WCM L;  5IYC L;  3CQZ L;  4C3I L;  1I6H L;  1K83 L;  1I3Q L;  4QIW P;  4BY7 L;  4A3F L;  3S2H L;  4A3J L;  1R9T L;  5C4X L;  4A3L L;  1TWG L;  1TWH L;  3GTL L;  3M3Y L;  3S2D L;  5M5X L;  3S1M L;  4A3C L;  2VUM L;  3HOZ L;  4A93 L;  5FJ8 L;  4A3I L;  2R92 L;  3M4O L;  4A3B L;  2NVQ L;  3K7A L;  2NVY L;  3I4M L;  3HOU L;  3S1Q L;  2JA8 L;  3H3V M;  5M5W L;  4AYB P;  3S16 L;  4A3D L;  4A3M L;  3HOY L;  5C3E L;  3RZD L;  5FLM L;  3PO3 L;  3GTQ L;  1Y1V L;  4C2M 1;  3S1R L;  3HOX L;  3HOV L;  5IP7 L;  3S1N L;  4BBR L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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