5IWEA

E45q mutant of phenazine biosynthesis protein phzf in complex with (5r,6r)-6-azaniumyl-5-ethoxycyclohexa-1,3-diene-1-carboxylate
Total Genus 74
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
279
structure length
279
Chain Sequence
HMHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSQSTFVLKPRNGGDALIRIFTPVNELPFAGHPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRDAELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Mechanisms and Specificity of Phenazine Biosynthesis Protein PhzF.
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Isomerase
molecule keywords Trans-2,3-dihydro-3-hydroxyanthranilate isomerase
total genus 74
structure length 279
sequence length 279
ec nomenclature ec 5.3.3.17: Trans-2,3-dihydro-3-hydroxyanthranilate isomerase.
pdb deposition date 2016-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02567 PhzC-PhzF Phenazine biosynthesis-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 5iweA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 5iweA01
4Q2HA 2AZPA 1XUBA 4J9XA 2PW0A 4JCIA 5H2GA 1BWZA 3EDNA 3EKMA 3EJXA 4IJZA 1TM0A 4JD7A 5M47A 2Q9HA 1U0KA 4Q60A 1QY9A 4LB0A 2H9FA 1U1XA 1GQZA 1QYAA 2Q9JA 4K7XA 1SDJA 4J9WA 1U1WA 4K8LA 1W62A 1U1VA 2GKJA 1W61A 5H2YA 4IK0A 4K7GB 4JUUA 1S7JA 5HA4A 5IWEA 1T6KA 3FVEA 2OTNA 2PVZA 4JBDA 1XUAA 2GKEA 3G7KA 1YM5A 4DUNA
chains in the Genus database with same CATH superfamily
3WQZA 4J9XA 3DEVA 2ZXOA 1I74A 4JD7A 4Q60A 1QY9A 4LB0A 2QB8A 4J9WA 4GL6A 4OA3A 4JUUA 1S7JA 2QB7A 1IR6A 5HA4A 2KPTA 1XUAA 3G7KA 1YM5A 2YMAA 1K20A 4LS9A 1BWZA 3ICJA 1WPMA 4RPAA 1U1XA 3IGHX 2EB0A 1SDJA 2IW4A 3W5WA 4K7GB 2LT2A 2ENXA 5IWEA 4JBDA 4PY9A 4LG3A 2MPBA 2HAWA 2AZPA 3PTJA 1XUBA 2ZVFA 4JCIA 5H2GA 3EDNA 3EKMA 3EJXA 5M47A 1U0KA 2H9FA 2ZXPA 4K7XA 2KW7A 1U1WA 4IK0A 1T6KA 4Q2HA 4DUNA 3G98A 2ZXRA 3PVHA 5ANPA 2PW0A 1TM0A 2Q9HA 2Q9JA 1GQZA 1QYAA 1WPPA 4K8LA 1W62A 1U1VA 1W61A 2GKJA 5H2YA 3PW9A 3FVEA 2OTNA 2PVZA 2QB6A 2GKEA 1K23A 4IJZA
chains in the Genus database with same CATH topology
3WQZA 4J9XA 3DEVA 2ZXOA 1I74A 4JD7A 4Q60A 1QY9A 4LB0A 2QB8A 4J9WA 4GL6A 4OA3A 4JUUA 1S7JA 2QB7A 1IR6A 5HA4A 2KPTA 1XUAA 3G7KA 1YM5A 2YMAA 1K20A 4LS9A 1BWZA 3ICJA 1WPMA 4RPAA 1U1XA 3IGHX 2EB0A 1SDJA 2IW4A 3W5WA 4K7GB 2LT2A 2ENXA 5IWEA 4JBDA 4PY9A 4LG3A 2MPBA 2HAWA 2AZPA 3PTJA 1XUBA 2ZVFA 4JCIA 5H2GA 3EDNA 3EKMA 3EJXA 5M47A 1U0KA 2H9FA 2ZXPA 4K7XA 2KW7A 1U1WA 4IK0A 1T6KA 4Q2HA 4DUNA 3G98A 2ZXRA 3PVHA 5ANPA 2PW0A 1TM0A 2Q9HA 2Q9JA 1GQZA 1QYAA 1WPPA 4K8LA 1W62A 1U1VA 1W61A 2GKJA 5H2YA 3PW9A 3FVEA 2OTNA 2PVZA 2QB6A 2GKEA 1K23A 4IJZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q2H A;  2AZP A;  1XUB A;  4J9X A;  2PW0 A;  4JCI A;  5H2G A;  1BWZ A;  3EDN A;  3EKM A;  3EJX A;  4IJZ A;  1TM0 A;  4JD7 A;  5M47 A;  2Q9H A;  1U0K A;  4Q60 A;  1QY9 A;  4LB0 A;  2H9F A;  1U1X A;  1GQZ A;  1QYA A;  2Q9J A;  4K7X A;  1SDJ A;  4J9W A;  1U1W A;  4K8L A;  1W62 A;  1U1V A;  2GKJ A;  1W61 A;  5H2Y A;  4IK0 A;  4K7G B;  4JUU A;  1S7J A;  5HA4 A;  5IWE A;  1T6K A;  3FVE A;  2OTN A;  2PVZ A;  4JBD A;  1XUA A;  2GKE A;  3G7K A;  1YM5 A;  4DUN A; 
#chains in the Genus database with same CATH topology
 3WQZ A;  4J9X A;  3DEV A;  2ZXO A;  1I74 A;  4JD7 A;  4Q60 A;  1QY9 A;  4LB0 A;  2QB8 A;  4J9W A;  4GL6 A;  4OA3 A;  4JUU A;  1S7J A;  2QB7 A;  1IR6 A;  5HA4 A;  2KPT A;  1XUA A;  3G7K A;  1YM5 A;  2YMA A;  1K20 A;  4LS9 A;  1BWZ A;  3ICJ A;  1WPM A;  4RPA A;  1U1X A;  3IGH X;  2EB0 A;  1SDJ A;  2IW4 A;  3W5W A;  4K7G B;  2LT2 A;  2ENX A;  5IWE A;  4JBD A;  4PY9 A;  4LG3 A;  2MPB A;  2HAW A;  2AZP A;  3PTJ A;  1XUB A;  2ZVF A;  4JCI A;  5H2G A;  3EDN A;  3EKM A;  3EJX A;  5M47 A;  1U0K A;  2H9F A;  2ZXP A;  4K7X A;  2KW7 A;  1U1W A;  4IK0 A;  1T6K A;  4Q2H A;  4DUN A;  3G98 A;  2ZXR A;  3PVH A;  5ANP A;  2PW0 A;  1TM0 A;  2Q9H A;  2Q9J A;  1GQZ A;  1QYA A;  1WPP A;  4K8L A;  1W62 A;  1U1V A;  1W61 A;  2GKJ A;  5H2Y A;  3PW9 A;  3FVE A;  2OTN A;  2PVZ A;  2QB6 A;  2GKE A;  1K23 A;  4IJZ A; 
#chains in the Genus database with same CATH homology
 3WQZ A;  4J9X A;  3DEV A;  2ZXO A;  1I74 A;  4JD7 A;  4Q60 A;  1QY9 A;  4LB0 A;  2QB8 A;  4J9W A;  4GL6 A;  4OA3 A;  4JUU A;  1S7J A;  2QB7 A;  1IR6 A;  5HA4 A;  2KPT A;  1XUA A;  3G7K A;  1YM5 A;  2YMA A;  1K20 A;  4LS9 A;  1BWZ A;  3ICJ A;  1WPM A;  4RPA A;  1U1X A;  3IGH X;  2EB0 A;  1SDJ A;  2IW4 A;  3W5W A;  4K7G B;  2LT2 A;  2ENX A;  5IWE A;  4JBD A;  4PY9 A;  4LG3 A;  2MPB A;  2HAW A;  2AZP A;  3PTJ A;  1XUB A;  2ZVF A;  4JCI A;  5H2G A;  3EDN A;  3EKM A;  3EJX A;  5M47 A;  1U0K A;  2H9F A;  2ZXP A;  4K7X A;  2KW7 A;  1U1W A;  4IK0 A;  1T6K A;  4Q2H A;  4DUN A;  3G98 A;  2ZXR A;  3PVH A;  5ANP A;  2PW0 A;  1TM0 A;  2Q9H A;  2Q9J A;  1GQZ A;  1QYA A;  1WPP A;  4K8L A;  1W62 A;  1U1V A;  1W61 A;  2GKJ A;  5H2Y A;  3PW9 A;  3FVE A;  2OTN A;  2PVZ A;  2QB6 A;  2GKE A;  1K23 A;  4IJZ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...