5IWHA

Structure of p. vulgaris higb toxin delta h92
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
97
structure length
97
Chain Sequence
GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDYKLGPEQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Endoribonuclease HigB
publication title Mechanism of endonuclease cleavage by the HigB toxin.
pubmed doi rcsb
source organism Proteus vulgaris
total genus 24
structure length 97
sequence length 97
ec nomenclature ec 3.1.-.-:
pdb deposition date 2016-03-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.20 Alpha Beta 2-Layer Sandwich YaeB-like fold RelE-like 5iwhA00
2KC9A 4ML2A 3KXEA 5CZFC 1Z8MA 2A6SA 5CW7B 3OEIC 3G5OB 4ML0B 4FXHA 4PX8A 4MCXB 4YY3Y 2KHEA 5CEGB 4LS4A 2A6QE 4FXED 3BPQB 4LSYA 5IXLA 4NRNA 5CZEB 4FXIA 2OTRA 4LTTA 2KC8A 2A6RA 4MMGA 4Q2UB 5IWHA 4MCTB 1WMIA 4MMJA
chains in the Genus database with same CATH superfamily
2FHZB 2KC9A 4ML2A 1XQBA 3KXEA 3VJ7A 5CZFC 1Z8MA 2A6SA 5CW7B 3OEIC 3G5OB 4ML0B 4FXHA 4PX8A 4MCXB 4YY3Y 2KHEA 5CEGB 2PD0A 4LS4A 2A6QE 4FXED 3BPQB 4LSYA 3HI2B 5IXLA 4NRNA 5CZEB 4FXIA 3AO9A 2OTRA 4LTTA 2A8KA 2DJHA 2KC8A 2A6RA 2DFXE 4MMGA 4FBDA 4Q2UB 5IWHA 4MCTB 1WMIA 4MMJA
chains in the Genus database with same CATH topology
2KC9A 4ML2A 3KXEA 5CZFC 1Z8MA 2A6SA 5CW7B 3OEIC 3G5OB 4ML0B 4FXHA 4PX8A 4MCXB 4YY3Y 2KHEA 5CEGB 4LS4A 2A6QE 4FXED 3BPQB 4LSYA 5IXLA 4NRNA 5CZEB 4FXIA 2OTRA 4LTTA 2KC8A 2A6RA 4MMGA 4Q2UB 5IWHA 4MCTB 1WMIA 4MMJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KC9 A;  4ML2 A;  3KXE A;  5CZF C;  1Z8M A;  2A6S A;  5CW7 B;  3OEI C;  3G5O B;  4ML0 B;  4FXH A;  4PX8 A;  4MCX B;  4YY3 Y;  2KHE A;  5CEG B;  4LS4 A;  2A6Q E;  4FXE D;  3BPQ B;  4LSY A;  5IXL A;  4NRN A;  5CZE B;  4FXI A;  2OTR A;  4LTT A;  2KC8 A;  2A6R A;  4MMG A;  4Q2U B;  5IWH A;  4MCT B;  1WMI A;  4MMJ A; 
#chains in the Genus database with same CATH topology
 2FHZ B;  2KC9 A;  4ML2 A;  1XQB A;  3KXE A;  3VJ7 A;  5CZF C;  1Z8M A;  2A6S A;  5CW7 B;  3OEI C;  3G5O B;  4ML0 B;  4FXH A;  4PX8 A;  4MCX B;  4YY3 Y;  2KHE A;  5CEG B;  2PD0 A;  4LS4 A;  2A6Q E;  4FXE D;  3BPQ B;  4LSY A;  3HI2 B;  5IXL A;  4NRN A;  5CZE B;  4FXI A;  3AO9 A;  2OTR A;  4LTT A;  2A8K A;  2DJH A;  2KC8 A;  2A6R A;  2DFX E;  4MMG A;  4FBD A;  4Q2U B;  5IWH A;  4MCT B;  1WMI A;  4MMJ A; 
#chains in the Genus database with same CATH homology
 2KC9 A;  4ML2 A;  3KXE A;  5CZF C;  1Z8M A;  2A6S A;  5CW7 B;  3OEI C;  3G5O B;  4ML0 B;  4FXH A;  4PX8 A;  4MCX B;  4YY3 Y;  2KHE A;  5CEG B;  4LS4 A;  2A6Q E;  4FXE D;  3BPQ B;  4LSY A;  5IXL A;  4NRN A;  5CZE B;  4FXI A;  2OTR A;  4LTT A;  2KC8 A;  2A6R A;  4MMG A;  4Q2U B;  5IWH A;  4MCT B;  1WMI A;  4MMJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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