5IXMB

The lps transporter lptde from yersinia pestis, core complex
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
143
structure length
141
Chain Sequence
FNLRGTTQTELQKLLLESSDPYGPLARSIRQQLRLNNVTIVDDAMRKDIPTLRIIGSSESQETVSIFRNGVAAENQLVLHVQAQVLIPGHDIYPLQVNVFRTFFDNPLTALAKEAEAEVLRQEMREQAAQQLVRQLLTVHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords LPS-assembly protein LptD
publication title Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.
pubmed doi rcsb
source organism Yersinia pestis
total genus 32
structure length 141
sequence length 143
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2016-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF04390 LptE Lipopolysaccharide-assembly
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.150 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Lipoprotein like domain 5ixmB00
2N8XA 4KWYA 3BF2A 5IV8B 4N4RB 4RHBB 4Q35B 2R76A 2JXPA 4NHRA 5TSEA 4RH8A 5IXMB
chains in the Genus database with same CATH superfamily
3M99B 4BC7A 5A6BD 3T1HE 2YRHA 2N3GA 4RH8A 4LF5E 2EPNA 4F9CB 3BF2A 3HXLA 4DKKA 1EH6A 2EE8A 2ZM6E 1A1KA 3P1XA 4Q35B 4OOGC 4F9BB 2HGHA 2YTGA 2EM0A 2EPRA 2LUPB 1T38A 1UBDC 4B3ME 1FKAE 4DR7E 1F2IG 4LU9A 2EP3A 2ODRC 3TQMA 4X62E 1ZR9A 3J81C 2ENAA 1X47A 2V88A 5BR8E 4LFBE 2EPZA 3J7Yp 2EORA 5AE3A 2WZOA 4DMIA 4X66E 2UXCE 1O0WA 1YSAC 1A1FA 2L92A 3C6KA 2EM8A 2EOXA 4RHBB 3T1YE 4JI8E 2YTEA 2K7IA 2EPOA 2DLKA 1NEIA 2D9HA 4FK5C 2EPPA 2M9AA 1GTKA 1GQEA 4B3SE 1ZBTA 2RQLA 5A6JA 2EM7A 1MEYC 5TSEA 3HTXA 2EMAA 4NXNE 2EL5A 1UN6B 3EPKA 2A25A 2L33A 4HEIA 4DR5E 4KHPE 2LE2A 2EPKX 5LLQA 1N33E 2EM4A 2DMYA 2JOXA 2BBGA 1PDAA 1TF6A 4ZYDA 4M30A 2EPLX 2CPNA 2UUAE 4JYAE 3IWBA 1IBKE 5ADZA 2CT1A 1N34E 2LCEA 4DR4E 2YTQA 3BGHA 3L00A 2ENHA 1WRJA 2JVAA 4R2AA 2ELZA 2RPCA 2EMGA 2V8QB 2YTFA 1A1GA 1MGTA 3C4BA 2F4VE 2EOIA 2EN8A 1I94E 1UHZA 2WBUA 2MC6A 2WCC3 1TN9A 4JI3E 3AUZA 1N32E 1A1JA 2DSYA 2LRSA 4JI1E 2MDGA 4LF7E 4X8WA 2L8TA 2EOHA 2YTDA 4JI6E 2YSOA 4F54A 3DF6A 2DMIA 1RMDA 2EMYA 3C6MA 3THOB 2LJUA 2V86A 2UUBE 1YYKA 5AE1A 3VYYA 1B69A 2EMCA 4O43A 2YRMA 2EQ3A 1GZ6A 3OTOE 4GZNC 1N36E 2VF1A 1IQSA 4TUIA 2GLIA 2R1FA 2RTXA 2NUEA 2EPCA 2VQFE 2DIXA 2UU9E 4R2DA 5LMNE 1T4LB 1X5WA 4DV5E 1EH8A 3KWRA 4KWYA 2WBTA 2EOMA 2EN2A 2KOUA 1IQOA 1XNQE 2DB2A 2YWQA 4WSGA 3HPZA 3EPHA 4NHRA 1P47A 2VRDA 2FV4B 1TF3A 5A6KA 5A2QC 4WPYA 3ADJA 4M2ZA 3AV0A 2EMZA 2ELYA 1X48A 3ADGA 3VHTB 1X6FA 3IWDA 5A6BA 4R2EA 2EOYA 2LVHA 1BB8A 1G2FC 3LMLA 5LMUE 2V83A 4P7DA 2UXBE 4MLQA 2EPXA 2EN4A 2JXPA 3JAMC 1HNZE 1UILA 5IXMB 2FGGA 4DR2E 1YUJA 2ENCA 1ZU1A 1PJQA 3QG5C 2EOEA 1XMOE 2MKDA 4LF6E 2N3HA 2YSPA 3J80C 4HTGA 4R2QA 3KZZA 2M4IA 2B9DA 5AE2A 4ZYGA 1QU6A 2B7VA 1XNRE 2E5LE 2EWLA 4BHBA 2DGCA 2EOOA 2WBSA 2UXDE 5FLXC 2EQ0A 2MC5A 5AC4A 2YTPA 5AC5A 2CSHA 4DV4E 2EOFA 3ADLA 2MDRA 4DR3E 2KHXA 2YU5A 2YZTA 2EM2A 4Q28A 2LTSA 3KZYA 1J26A 2EM6A 2M1SA 4LF9E 5A6AA 1N3GA 2RSIA 4F9AB 1X49A 5IWAE 4BHCA 2JYAA 2EPMX 4K0KE 1YUIA 4ZYEA 4LFCE 2YTNA 2M7QA 2KONA 2LMZA 5A69A 2DLQA 1YYWA 2I9IA 1JK2A 1HR0E 2RSMA 5KL2A 4F6MA 4DV3E 2JR1A 4JI4E 4LFAE 2JP9A 3IWCA 4L5NC 4M0VA 4NZVA 4WFTA 1A1IA 1HNXE 2E72A 2LBSB 2EMBA 2J7JA 2LO3A 4X64E 2NUFA 2EOJA 2EMIA 2L3JA 2V89A 3EPLA 4IJDA 1WJPA 2EMHA 4LTYA 4R03A 1A1LA 4JI5E 2JY9A 1BBGA 2EPUA 2GHFA 2UUCE 1KYQA 2E1MA 2YPNA 2EM5A 4X9JA 2I13A 4DR1E 4WXCA 4J8ZA 2EMXA 1WHQA 3J7AG 2R76A 1WXRA 2GPIA 3THNA 4O4KA 5KL7A 1X6HA 2LV2A 2EJ4A 1SR9A 2G7HA 2EOSA 4DUYE 4AQYE 2YTOA 5F3WA 1QNTA 2B3TB 5DNYA 2YU8A 4BBYA 1ZBQA 1L4SA 4BMJA 1YFHA 2YRKA 1EKZA 2EMFA 4B3TE 1AAYA 1YYOA 2V87A 2EL4A 1T39A 2EQ1A 4YHHE 4JI0E 1FJGE 1LLMC 2EMWA 3ADIA 3BBGA 4BS9A 5AASA 1T4NA 1HNWE 4O5GA 3K6QA 3EPJA 1PKPA 4GEQB 3ECRA 3H09A 4IS1C 2CTDA 2EMKA 2JWOA 2BB8A 3HQ1A 1RC7A 4N4RB 2LT7A 2EN7A 2MKNA 1KJKA 2YTIA 4M9VC 1BBOA 5IT9C 2B7TA 2N8XA 1IMUA 2V85A 1JK1A 1PJSA 4MLVA 2ODRD 3ZOQB 2LUQA 1X6EA 2EMLA 2L2MA 4WX9A 4R8OA 5IV8B 3FIGA 1ZAAC 4O24A 4NXME 2HHHE 4BC9A 1YPNA 1XMQE 1DGCA 2EM9A 4YY3E 2EPAA 4LF4E 4DV6E 1Z1BA 3JU0A 3DJWA 1PJTA 4LF8E 1DQ3A 1G2DC 4R2PA 1WHNA 4WSPA 2LTRA 3MHHC 4GKKE 2EN6A 2L6MA 1YZ9A 3JTZA 3RMPA 5KL6A 1IBLE 4WXDA 1STUA 3F6GA 4F6NA 2RS6A 2HJJA 4B3RE 4F2JC 2EN3A 2FTXB 2K4VA 2EOZA 4R2CA 1DI2A 4DV1E 4OX9E 4X65E 4DV2E 2YTJA 5KL4A 2LJHA 3VYXA 2L2NA 3MSWA 2EOQA 4BCAA 4ZYHA 2VQEE 4DR6E 2H36X 2Q8UA 1RQ0A 2NA2A 4DUZE 4JV5E 2VE7C 2RS7A 4L8NA 3C4TA 4R2SA 3LLHA 2NABA 2IHR1 2F8BA 1J5EE 5KL3A 2PRTA 5LL6R 1A1HA 2HC5A 2DRPA 1T4OA 4DV0E 4P78A 3BIDA 2L3CA 1SFEA 1EH7A 4WYQB 3F6HA 4I8OA 3VK6A 2L2KB 1IBME 5KL5A 2YT4A 1X3CA 1NCSA 4JI7E 4JI2E 4TUGA 2JPAA 3HPSA 4GKJE 4KZSA 5T6JA 2EM3A 2EZ6A 3OMLA 2EN1A 3EQ1A 2ADRA 3MHSC 2EL6A 4R2RA 4DV7E 2NUGA 5CFFE 3UK3C 2JOBA 1AH5A
chains in the Genus database with same CATH topology
2N8XA 4KWYA 3BF2A 5IV8B 4N4RB 4RHBB 4Q35B 2R76A 2JXPA 4NHRA 5TSEA 4RH8A 5IXMB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2N8X A;  4KWY A;  3BF2 A;  5IV8 B;  4N4R B;  4RHB B;  4Q35 B;  2R76 A;  2JXP A;  4NHR A;  5TSE A;  4RH8 A;  5IXM B; 
#chains in the Genus database with same CATH topology
 3M99 B;  4BC7 A;  5A6B D;  3T1H E;  2YRH A;  2N3G A;  4RH8 A;  4LF5 E;  2EPN A;  4F9C B;  3BF2 A;  3HXL A;  4DKK A;  1EH6 A;  2EE8 A;  2ZM6 E;  1A1K A;  3P1X A;  4Q35 B;  4OOG C;  4F9B B;  2HGH A;  2YTG A;  2EM0 A;  2EPR A;  2LUP B;  1T38 A;  1UBD C;  4B3M E;  1FKA E;  4DR7 E;  1F2I G;  4LU9 A;  2EP3 A;  2ODR C;  3TQM A;  4X62 E;  1ZR9 A;  3J81 C;  2ENA A;  1X47 A;  2V88 A;  5BR8 E;  4LFB E;  2EPZ A;  3J7Y p;  2EOR A;  5AE3 A;  2WZO A;  4DMI A;  4X66 E;  2UXC E;  1O0W A;  1YSA C;  1A1F A;  2L92 A;  3C6K A;  2EM8 A;  2EOX A;  4RHB B;  3T1Y E;  4JI8 E;  2YTE A;  2K7I A;  2EPO A;  2DLK A;  1NEI A;  2D9H A;  4FK5 C;  2EPP A;  2M9A A;  1GTK A;  1GQE A;  4B3S E;  1ZBT A;  2RQL A;  5A6J A;  2EM7 A;  1MEY C;  5TSE A;  3HTX A;  2EMA A;  4NXN E;  2EL5 A;  1UN6 B;  3EPK A;  2A25 A;  2L33 A;  4HEI A;  4DR5 E;  4KHP E;  2LE2 A;  2EPK X;  5LLQ A;  1N33 E;  2EM4 A;  2DMY A;  2JOX A;  2BBG A;  1PDA A;  1TF6 A;  4ZYD A;  4M30 A;  2EPL X;  2CPN A;  2UUA E;  4JYA E;  3IWB A;  1IBK E;  5ADZ A;  2CT1 A;  1N34 E;  2LCE A;  4DR4 E;  2YTQ A;  3BGH A;  3L00 A;  2ENH A;  1WRJ A;  2JVA A;  4R2A A;  2ELZ A;  2RPC A;  2EMG A;  2V8Q B;  2YTF A;  1A1G A;  1MGT A;  3C4B A;  2F4V E;  2EOI A;  2EN8 A;  1I94 E;  1UHZ A;  2WBU A;  2MC6 A;  2WCC 3;  1TN9 A;  4JI3 E;  3AUZ A;  1N32 E;  1A1J A;  2DSY A;  2LRS A;  4JI1 E;  2MDG A;  4LF7 E;  4X8W A;  2L8T A;  2EOH A;  2YTD A;  4JI6 E;  2YSO A;  4F54 A;  3DF6 A;  2DMI A;  1RMD A;  2EMY A;  3C6M A;  3THO B;  2LJU A;  2V86 A;  2UUB E;  1YYK A;  5AE1 A;  3VYY A;  1B69 A;  2EMC A;  4O43 A;  2YRM A;  2EQ3 A;  1GZ6 A;  3OTO E;  4GZN C;  1N36 E;  2VF1 A;  1IQS A;  4TUI A;  2GLI A;  2R1F A;  2RTX A;  2NUE A;  2EPC A;  2VQF E;  2DIX A;  2UU9 E;  4R2D A;  5LMN E;  1T4L B;  1X5W A;  4DV5 E;  1EH8 A;  3KWR A;  4KWY A;  2WBT A;  2EOM A;  2EN2 A;  2KOU A;  1IQO A;  1XNQ E;  2DB2 A;  2YWQ A;  4WSG A;  3HPZ A;  3EPH A;  4NHR A;  1P47 A;  2VRD A;  2FV4 B;  1TF3 A;  5A6K A;  5A2Q C;  4WPY A;  3ADJ A;  4M2Z A;  3AV0 A;  2EMZ A;  2ELY A;  1X48 A;  3ADG A;  3VHT B;  1X6F A;  3IWD A;  5A6B A;  4R2E A;  2EOY A;  2LVH A;  1BB8 A;  1G2F C;  3LML A;  5LMU E;  2V83 A;  4P7D A;  2UXB E;  4MLQ A;  2EPX A;  2EN4 A;  2JXP A;  3JAM C;  1HNZ E;  1UIL A;  5IXM B;  2FGG A;  4DR2 E;  1YUJ A;  2ENC A;  1ZU1 A;  1PJQ A;  3QG5 C;  2EOE A;  1XMO E;  2MKD A;  4LF6 E;  2N3H A;  2YSP A;  3J80 C;  4HTG A;  4R2Q A;  3KZZ A;  2M4I A;  2B9D A;  5AE2 A;  4ZYG A;  1QU6 A;  2B7V A;  1XNR E;  2E5L E;  2EWL A;  4BHB A;  2DGC A;  2EOO A;  2WBS A;  2UXD E;  5FLX C;  2EQ0 A;  2MC5 A;  5AC4 A;  2YTP A;  5AC5 A;  2CSH A;  4DV4 E;  2EOF A;  3ADL A;  2MDR A;  4DR3 E;  2KHX A;  2YU5 A;  2YZT A;  2EM2 A;  4Q28 A;  2LTS A;  3KZY A;  1J26 A;  2EM6 A;  2M1S A;  4LF9 E;  5A6A A;  1N3G A;  2RSI A;  4F9A B;  1X49 A;  5IWA E;  4BHC A;  2JYA A;  2EPM X;  4K0K E;  1YUI A;  4ZYE A;  4LFC E;  2YTN A;  2M7Q A;  2KON A;  2LMZ A;  5A69 A;  2DLQ A;  1YYW A;  2I9I A;  1JK2 A;  1HR0 E;  2RSM A;  5KL2 A;  4F6M A;  4DV3 E;  2JR1 A;  4JI4 E;  4LFA E;  2JP9 A;  3IWC A;  4L5N C;  4M0V A;  4NZV A;  4WFT A;  1A1I A;  1HNX E;  2E72 A;  2LBS B;  2EMB A;  2J7J A;  2LO3 A;  4X64 E;  2NUF A;  2EOJ A;  2EMI A;  2L3J A;  2V89 A;  3EPL A;  4IJD A;  1WJP A;  2EMH A;  4LTY A;  4R03 A;  1A1L A;  4JI5 E;  2JY9 A;  1BBG A;  2EPU A;  2GHF A;  2UUC E;  1KYQ A;  2E1M A;  2YPN A;  2EM5 A;  4X9J A;  2I13 A;  4DR1 E;  4WXC A;  4J8Z A;  2EMX A;  1WHQ A;  3J7A G;  2R76 A;  1WXR A;  2GPI A;  3THN A;  4O4K A;  5KL7 A;  1X6H A;  2LV2 A;  2EJ4 A;  1SR9 A;  2G7H A;  2EOS A;  4DUY E;  4AQY E;  2YTO A;  5F3W A;  1QNT A;  2B3T B;  5DNY A;  2YU8 A;  4BBY A;  1ZBQ A;  1L4S A;  4BMJ A;  1YFH A;  2YRK A;  1EKZ A;  2EMF A;  4B3T E;  1AAY A;  1YYO A;  2V87 A;  2EL4 A;  1T39 A;  2EQ1 A;  4YHH E;  4JI0 E;  1FJG E;  1LLM C;  2EMW A;  3ADI A;  3BBG A;  4BS9 A;  5AAS A;  1T4N A;  1HNW E;  4O5G A;  3K6Q A;  3EPJ A;  1PKP A;  4GEQ B;  3ECR A;  3H09 A;  4IS1 C;  2CTD A;  2EMK A;  2JWO A;  2BB8 A;  3HQ1 A;  1RC7 A;  4N4R B;  2LT7 A;  2EN7 A;  2MKN A;  1KJK A;  2YTI A;  4M9V C;  1BBO A;  5IT9 C;  2B7T A;  2N8X A;  1IMU A;  2V85 A;  1JK1 A;  1PJS A;  4MLV A;  2ODR D;  3ZOQ B;  2LUQ A;  1X6E A;  2EML A;  2L2M A;  4WX9 A;  4R8O A;  5IV8 B;  3FIG A;  1ZAA C;  4O24 A;  4NXM E;  2HHH E;  4BC9 A;  1YPN A;  1XMQ E;  1DGC A;  2EM9 A;  4YY3 E;  2EPA A;  4LF4 E;  4DV6 E;  1Z1B A;  3JU0 A;  3DJW A;  1PJT A;  4LF8 E;  1DQ3 A;  1G2D C;  4R2P A;  1WHN A;  4WSP A;  2LTR A;  3MHH C;  4GKK E;  2EN6 A;  2L6M A;  1YZ9 A;  3JTZ A;  3RMP A;  5KL6 A;  1IBL E;  4WXD A;  1STU A;  3F6G A;  4F6N A;  2RS6 A;  2HJJ A;  4B3R E;  4F2J C;  2EN3 A;  2FTX B;  2K4V A;  2EOZ A;  4R2C A;  1DI2 A;  4DV1 E;  4OX9 E;  4X65 E;  4DV2 E;  2YTJ A;  5KL4 A;  2LJH A;  3VYX A;  2L2N A;  3MSW A;  2EOQ A;  4BCA A;  4ZYH A;  2VQE E;  4DR6 E;  2H36 X;  2Q8U A;  1RQ0 A;  2NA2 A;  4DUZ E;  4JV5 E;  2VE7 C;  2RS7 A;  4L8N A;  3C4T A;  4R2S A;  3LLH A;  2NAB A;  2IHR 1;  2F8B A;  1J5E E;  5KL3 A;  2PRT A;  5LL6 R;  1A1H A;  2HC5 A;  2DRP A;  1T4O A;  4DV0 E;  4P78 A;  3BID A;  2L3C A;  1SFE A;  1EH7 A;  4WYQ B;  3F6H A;  4I8O A;  3VK6 A;  2L2K B;  1IBM E;  5KL5 A;  2YT4 A;  1X3C A;  1NCS A;  4JI7 E;  4JI2 E;  4TUG A;  2JPA A;  3HPS A;  4GKJ E;  4KZS A;  5T6J A;  2EM3 A;  2EZ6 A;  3OML A;  2EN1 A;  3EQ1 A;  2ADR A;  3MHS C;  2EL6 A;  4R2R A;  4DV7 E;  2NUG A;  5CFF E;  3UK3 C;  2JOB A;  1AH5 A; 
#chains in the Genus database with same CATH homology
 2N8X A;  4KWY A;  3BF2 A;  5IV8 B;  4N4R B;  4RHB B;  4Q35 B;  2R76 A;  2JXP A;  4NHR A;  5TSE A;  4RH8 A;  5IXM B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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