5IXMB

The lps transporter lptde from yersinia pestis, core complex
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
143
structure length
141
Chain Sequence
FNLRGTTQTELQKLLLESSDPYGPLARSIRQQLRLNNVTIVDDAMRKDIPTLRIIGSSESQETVSIFRNGVAAENQLVLHVQAQVLIPGHDIYPLQVNVFRTFFDNPLTALAKEAEAEVLRQEMREQAAQQLVRQLLTVHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords LPS-assembly protein LptD
publication title Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.
pubmed doi rcsb
source organism Yersinia pestis
molecule tags Transport protein
total genus 32
structure length 141
sequence length 143
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2016-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF04390 LptE Lipopolysaccharide-assembly
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.150 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Lipoprotein like domain 5ixmB00
2R76A 5TSEA 4RH8A 4KWYA 4RHBB 3BF2A 4Q35B 2N8XA 4NHRA 5IV8B 2JXPA 5IXMB 4N4RB
chains in the Genus database with same CATH superfamily
5A69A 4IJDA 1NEIA 4F6MA 1G2FC 3IWBA 2E72A 4BCAA 2L3CA 4DV4E 4X9JA 1UILA 1MGTA 2ODRD 1YYOA 3KZZA 2NUGA 5A2QC 3HPSA 2FTXB 1PJQA 1A1HA 1WXRA 2RPCA 2V89A 2MKNA 3LMLA 2UXCE 5LLQA 1X6EA 1N3GA 4DV6E 2GPIA 4DV7E 4KWYA 2UXDE 2JYAA 3K6QA 2UU9E 3HXLA 3RMPA 2YTEA 4YHHE 5DNYA 2EOXA 2EL6A 1A1IA 2EPRA 4LF5E 2EM0A 4JI5E 2EL4A 2ENAA 2WBTA 2JVAA 2YTDA 5KL3A 4DMIA 1G2DC 1T4OA 1WHNA 3J7AG 4M9VC 4LF4E 4O43A 4M0VA 2L3JA 2EMXA 2EPXA 5KL7A 4WX9A 5A6BA 2B3TB 2YPNA 4X66E 4AQYE 2HGHA 1BB8A 2EMGA 1YZ9A 1SFEA 2RSIA 2YTJA 3DJWA 3ADJA 2J7JA 4DV3E 4X65E 2L92A 3VK6A 4GKKE 3EPKA 2L2KB 2DGCA 5A6JA 5F3WA 1XMOE 2B7VA 2EN7A 1YYKA 4Q35B 2N8XA 2JOBA 2A25A 1FKAE 1YUIA 2LE2A 2EZ6A 1WHQA 1GQEA 3P1XA 4DKKA 2EM9A 1EH7A 2CT1A 5KL5A 4K0KE 2VE7C 3L00A 5AE2A 3BIDA 2EP3A 1ZU1A 3F6HA 4LF8E 2EOIA 1QU6A 2CTDA 2LJHA 3EPLA 1RMDA 2UXBE 3QG5C 3HQ1A 1B69A 2EN3A 2YRKA 2EOQA 5BR8E 4DV2E 4R2QA 2B9DA 3THNA 2G7HA 2EPCA 1GTKA 4O5GA 2EM7A 4I8OA 4P78A 2ELYA 3JU0A 3VYXA 2EMYA 2DMYA 4DUYE 2HHHE 2L6MA 1ZBTA 1N36E 3VHTB 2CPNA 4B3ME 1MEYC 3MHSC 2YRMA 4KHPE 5KL6A 1T39A 1RC7A 4F2JC 2DRPA 3DF6A 2JOXA 2EM6A 1X6FA 1IMUA 1Z1BA 3VYYA 1QNTA 4LF9E 1N34E 5IV8B 2NUFA 4BBYA 2EL5A 3EPHA 2UUBE 4O4KA 2EQ1A 2LCEA 1DQ3A 2VQEE 1IQSA 2LT7A 2DLKA 2JPAA 4ZYDA 2EMCA 4BC7A 2LJUA 1LLMC 5FLXC 2VQFE 4O24A 4FK5C 3MSWA 1PDAA 2RS7A 1JK2A 1IBME 3C4TA 5AE1A 2M1SA 4F54A 4DV5E 4X62E 4JV5E 2MDRA 4DV1E 2I13A 1EH6A 1UHZA 4JI2E 4TUGA 2EOOA 2FGGA 2MC6A 4LFBE 1IQOA 1X3CA 4J8ZA 2MC5A 2LV2A 2UUCE 2YTPA 4R03A 2VRDA 3TQMA 4N4RB 3OTOE 2M9AA 1UBDC 3BBGA 3FIGA 2EE8A 2EPNA 2JXPA 2IHR1 1O0WA 5LMNE 1A1GA 4DR3E 4WXDA 5LMUE 4DV0E 1X5WA 2KHXA 2RS6A 2DSYA 3KWRA 2BB8A 3C6KA 1RQ0A 3IWCA 4NZVA 2V87A 4MLVA 3JTZA 1PJSA 4NHRA 4B3SE 2WZOA 4M30A 2M4IA 2JP9A 4DR4E 1SR9A 2B7TA 4LTYA 4ZYEA 1L4SA 4MLQA 4GEQB 2RSMA 2N3GA 2UUAE 2LO3A 2YRHA 4TUIA 3IWDA 5AC4A 2V83A 4R2PA 1YYWA 4BHBA 5TSEA 2D9HA 3BGHA 4R2SA 1NCSA 5A6KA 2CSHA 1STUA 1J5EE 4R2DA 2K4VA 2M7QA 4WPYA 2LUPB 2EMIA 4ZYHA 3KZYA 1HNZE 3ADGA 4DR7E 2ODRC 2H36X 1TN9A 4JI1E 3C4BA 4DR5E 2EN4A 3LLHA 2LTRA 2EPMX 3MHHC 2V8QB 2EMKA 3AV0A 2YSOA 3T1YE 2JR1A 5A6BD 4R8OA 1N32E 4WXCA 2EOJA 2HC5A 2EOEA 1KYQA 2EJ4A 4M2ZA 3BF2A 2EN2A 1WJPA 1EH8A 2ENHA 2KONA 2EMHA 2RQLA 2MKDA 3J81C 3T1HE 4LF7E 2EM8A 1KJKA 5IT9C 4JYAE 4GKJE 2EPAA 2E5LE 2R76A 1F2IG 4OOGC 4B3TE 1BBOA 3J7Yp 1X49A 2L2MA 1TF6A 3H09A 4RH8A 1P47A 2EPKX 2YTOA 2LTSA 2E1MA 5CFFE 2L2NA 3ADIA 1PKPA 2WBSA 1J26A 1YPNA 3ECRA 2EWLA 2BBGA 2WCC3 4HTGA 3THOB 3M99B 1T4NA 4JI8E 5ADZA 2EMAA 1I94E 1HNXE 1ZBQA 2EM3A 3AUZA 2EM2A 2EOZA 3F6GA 4IS1C 1ZR9A 4DUZE 2EMLA 2YTFA 2DIXA 4JI3E 2V85A 2K7IA 2ZM6E 1BBGA 2DLQA 4DR6E 2F8BA 4KZSA 2HJJA 1HNWE 4F9BB 4BHCA 5KL2A 3EQ1A 2V86A 1IBKE 4L8NA 1GZ6A 2YT4A 3ZOQB 4WSGA 1A1JA 2GLIA 2NABA 1AH5A 2EMWA 1WRJA 2EOYA 4HEIA 2EMFA 4WSPA 4GZNC 1UN6B 5IXMB 2YU8A 1A1LA 2YSPA 4F6NA 2I9IA 2GHFA 2YTIA 1X6HA 2L8TA 2ELZA 3C6MA 4LFAE 4BC9A 1ZAAC 2EOFA 4X8WA 4RHBB 5AASA 4Q28A 5AE3A 2LMZA 2VF1A 4LU9A 2EPOA 4LFCE 2EOMA 5AC5A 4BMJA 2EM4A 1AAYA 1XNQE 2LUQA 4ZYGA 4R2RA 3HTXA 2RTXA 2JWOA 4JI7E 2JY9A 2YTNA 2EN6A 2EORA 2YTGA 2YZTA 1DI2A 2KOUA 5A6AA 2L33A 2EQ3A 2V88A 2R1FA 1IBLE 1N33E 1XMQE 5T6JA 3J80C 4JI0E 4WFTA 4NXNE 4R2AA 4R2EA 1X48A 2ADRA 1A1KA 4NXME 4X64E 2LVHA 2EOSA 1HR0E 1YSAC 2LBSB 1PJTA 4B3RE 2NUEA 1JK1A 2EM5A 2YU5A 2YWQA 1T4LB 2WBUA 1TF3A 2YTQA 3HPZA 4JI6E 1YFHA 1DGCA 5KL4A 2EQ0A 2EPLX 4BS9A 2DMIA 1X47A 2Q8UA 2F4VE 2EN1A 3JAMC 3OMLA 2MDGA 4WYQB 2EOHA 2EPPA 2FV4B 1FJGE 1A1FA 2EPZA 4F9CB 5IWAE 4YY3E 3UK3C 4JI4E 2LRSA 2EMBA 5LL6R 4DR2E 4LF6E 1YUJA 2NA2A 2ENCA 2PRTA 3ADLA 2EN8A 2EMZA 4DR1E 2DB2A 4L5NC 3EPJA 1T38A 1XNRE 2EPUA 4R2CA 2N3HA 4F9AB 4P7DA 4OX9E 1EKZA
chains in the Genus database with same CATH topology
2R76A 5TSEA 4RH8A 4KWYA 4RHBB 3BF2A 4Q35B 2N8XA 4NHRA 5IV8B 2JXPA 5IXMB 4N4RB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R76 A;  5TSE A;  4RH8 A;  4KWY A;  4RHB B;  3BF2 A;  4Q35 B;  2N8X A;  4NHR A;  5IV8 B;  2JXP A;  5IXM B;  4N4R B; 
#chains in the Genus database with same CATH topology
 5A69 A;  4IJD A;  1NEI A;  4F6M A;  1G2F C;  3IWB A;  2E72 A;  4BCA A;  2L3C A;  4DV4 E;  4X9J A;  1UIL A;  1MGT A;  2ODR D;  1YYO A;  3KZZ A;  2NUG A;  5A2Q C;  3HPS A;  2FTX B;  1PJQ A;  1A1H A;  1WXR A;  2RPC A;  2V89 A;  2MKN A;  3LML A;  2UXC E;  5LLQ A;  1X6E A;  1N3G A;  4DV6 E;  2GPI A;  4DV7 E;  4KWY A;  2UXD E;  2JYA A;  3K6Q A;  2UU9 E;  3HXL A;  3RMP A;  2YTE A;  4YHH E;  5DNY A;  2EOX A;  2EL6 A;  1A1I A;  2EPR A;  4LF5 E;  2EM0 A;  4JI5 E;  2EL4 A;  2ENA A;  2WBT A;  2JVA A;  2YTD A;  5KL3 A;  4DMI A;  1G2D C;  1T4O A;  1WHN A;  3J7A G;  4M9V C;  4LF4 E;  4O43 A;  4M0V A;  2L3J A;  2EMX A;  2EPX A;  5KL7 A;  4WX9 A;  5A6B A;  2B3T B;  2YPN A;  4X66 E;  4AQY E;  2HGH A;  1BB8 A;  2EMG A;  1YZ9 A;  1SFE A;  2RSI A;  2YTJ A;  3DJW A;  3ADJ A;  2J7J A;  4DV3 E;  4X65 E;  2L92 A;  3VK6 A;  4GKK E;  3EPK A;  2L2K B;  2DGC A;  5A6J A;  5F3W A;  1XMO E;  2B7V A;  2EN7 A;  1YYK A;  4Q35 B;  2N8X A;  2JOB A;  2A25 A;  1FKA E;  1YUI A;  2LE2 A;  2EZ6 A;  1WHQ A;  1GQE A;  3P1X A;  4DKK A;  2EM9 A;  1EH7 A;  2CT1 A;  5KL5 A;  4K0K E;  2VE7 C;  3L00 A;  5AE2 A;  3BID A;  2EP3 A;  1ZU1 A;  3F6H A;  4LF8 E;  2EOI A;  1QU6 A;  2CTD A;  2LJH A;  3EPL A;  1RMD A;  2UXB E;  3QG5 C;  3HQ1 A;  1B69 A;  2EN3 A;  2YRK A;  2EOQ A;  5BR8 E;  4DV2 E;  4R2Q A;  2B9D A;  3THN A;  2G7H A;  2EPC A;  1GTK A;  4O5G A;  2EM7 A;  4I8O A;  4P78 A;  2ELY A;  3JU0 A;  3VYX A;  2EMY A;  2DMY A;  4DUY E;  2HHH E;  2L6M A;  1ZBT A;  1N36 E;  3VHT B;  2CPN A;  4B3M E;  1MEY C;  3MHS C;  2YRM A;  4KHP E;  5KL6 A;  1T39 A;  1RC7 A;  4F2J C;  2DRP A;  3DF6 A;  2JOX A;  2EM6 A;  1X6F A;  1IMU A;  1Z1B A;  3VYY A;  1QNT A;  4LF9 E;  1N34 E;  5IV8 B;  2NUF A;  4BBY A;  2EL5 A;  3EPH A;  2UUB E;  4O4K A;  2EQ1 A;  2LCE A;  1DQ3 A;  2VQE E;  1IQS A;  2LT7 A;  2DLK A;  2JPA A;  4ZYD A;  2EMC A;  4BC7 A;  2LJU A;  1LLM C;  5FLX C;  2VQF E;  4O24 A;  4FK5 C;  3MSW A;  1PDA A;  2RS7 A;  1JK2 A;  1IBM E;  3C4T A;  5AE1 A;  2M1S A;  4F54 A;  4DV5 E;  4X62 E;  4JV5 E;  2MDR A;  4DV1 E;  2I13 A;  1EH6 A;  1UHZ A;  4JI2 E;  4TUG A;  2EOO A;  2FGG A;  2MC6 A;  4LFB E;  1IQO A;  1X3C A;  4J8Z A;  2MC5 A;  2LV2 A;  2UUC E;  2YTP A;  4R03 A;  2VRD A;  3TQM A;  4N4R B;  3OTO E;  2M9A A;  1UBD C;  3BBG A;  3FIG A;  2EE8 A;  2EPN A;  2JXP A;  2IHR 1;  1O0W A;  5LMN E;  1A1G A;  4DR3 E;  4WXD A;  5LMU E;  4DV0 E;  1X5W A;  2KHX A;  2RS6 A;  2DSY A;  3KWR A;  2BB8 A;  3C6K A;  1RQ0 A;  3IWC A;  4NZV A;  2V87 A;  4MLV A;  3JTZ A;  1PJS A;  4NHR A;  4B3S E;  2WZO A;  4M30 A;  2M4I A;  2JP9 A;  4DR4 E;  1SR9 A;  2B7T A;  4LTY A;  4ZYE A;  1L4S A;  4MLQ A;  4GEQ B;  2RSM A;  2N3G A;  2UUA E;  2LO3 A;  2YRH A;  4TUI A;  3IWD A;  5AC4 A;  2V83 A;  4R2P A;  1YYW A;  4BHB A;  5TSE A;  2D9H A;  3BGH A;  4R2S A;  1NCS A;  5A6K A;  2CSH A;  1STU A;  1J5E E;  4R2D A;  2K4V A;  2M7Q A;  4WPY A;  2LUP B;  2EMI A;  4ZYH A;  3KZY A;  1HNZ E;  3ADG A;  4DR7 E;  2ODR C;  2H36 X;  1TN9 A;  4JI1 E;  3C4B A;  4DR5 E;  2EN4 A;  3LLH A;  2LTR A;  2EPM X;  3MHH C;  2V8Q B;  2EMK A;  3AV0 A;  2YSO A;  3T1Y E;  2JR1 A;  5A6B D;  4R8O A;  1N32 E;  4WXC A;  2EOJ A;  2HC5 A;  2EOE A;  1KYQ A;  2EJ4 A;  4M2Z A;  3BF2 A;  2EN2 A;  1WJP A;  1EH8 A;  2ENH A;  2KON A;  2EMH A;  2RQL A;  2MKD A;  3J81 C;  3T1H E;  4LF7 E;  2EM8 A;  1KJK A;  5IT9 C;  4JYA E;  4GKJ E;  2EPA A;  2E5L E;  2R76 A;  1F2I G;  4OOG C;  4B3T E;  1BBO A;  3J7Y p;  1X49 A;  2L2M A;  1TF6 A;  3H09 A;  4RH8 A;  1P47 A;  2EPK X;  2YTO A;  2LTS A;  2E1M A;  5CFF E;  2L2N A;  3ADI A;  1PKP A;  2WBS A;  1J26 A;  1YPN A;  3ECR A;  2EWL A;  2BBG A;  2WCC 3;  4HTG A;  3THO B;  3M99 B;  1T4N A;  4JI8 E;  5ADZ A;  2EMA A;  1I94 E;  1HNX E;  1ZBQ A;  2EM3 A;  3AUZ A;  2EM2 A;  2EOZ A;  3F6G A;  4IS1 C;  1ZR9 A;  4DUZ E;  2EML A;  2YTF A;  2DIX A;  4JI3 E;  2V85 A;  2K7I A;  2ZM6 E;  1BBG A;  2DLQ A;  4DR6 E;  2F8B A;  4KZS A;  2HJJ A;  1HNW E;  4F9B B;  4BHC A;  5KL2 A;  3EQ1 A;  2V86 A;  1IBK E;  4L8N A;  1GZ6 A;  2YT4 A;  3ZOQ B;  4WSG A;  1A1J A;  2GLI A;  2NAB A;  1AH5 A;  2EMW A;  1WRJ A;  2EOY A;  4HEI A;  2EMF A;  4WSP A;  4GZN C;  1UN6 B;  5IXM B;  2YU8 A;  1A1L A;  2YSP A;  4F6N A;  2I9I A;  2GHF A;  2YTI A;  1X6H A;  2L8T A;  2ELZ A;  3C6M A;  4LFA E;  4BC9 A;  1ZAA C;  2EOF A;  4X8W A;  4RHB B;  5AAS A;  4Q28 A;  5AE3 A;  2LMZ A;  2VF1 A;  4LU9 A;  2EPO A;  4LFC E;  2EOM A;  5AC5 A;  4BMJ A;  2EM4 A;  1AAY A;  1XNQ E;  2LUQ A;  4ZYG A;  4R2R A;  3HTX A;  2RTX A;  2JWO A;  4JI7 E;  2JY9 A;  2YTN A;  2EN6 A;  2EOR A;  2YTG A;  2YZT A;  1DI2 A;  2KOU A;  5A6A A;  2L33 A;  2EQ3 A;  2V88 A;  2R1F A;  1IBL E;  1N33 E;  1XMQ E;  5T6J A;  3J80 C;  4JI0 E;  4WFT A;  4NXN E;  4R2A A;  4R2E A;  1X48 A;  2ADR A;  1A1K A;  4NXM E;  4X64 E;  2LVH A;  2EOS A;  1HR0 E;  1YSA C;  2LBS B;  1PJT A;  4B3R E;  2NUE A;  1JK1 A;  2EM5 A;  2YU5 A;  2YWQ A;  1T4L B;  2WBU A;  1TF3 A;  2YTQ A;  3HPZ A;  4JI6 E;  1YFH A;  1DGC A;  5KL4 A;  2EQ0 A;  2EPL X;  4BS9 A;  2DMI A;  1X47 A;  2Q8U A;  2F4V E;  2EN1 A;  3JAM C;  3OML A;  2MDG A;  4WYQ B;  2EOH A;  2EPP A;  2FV4 B;  1FJG E;  1A1F A;  2EPZ A;  4F9C B;  5IWA E;  4YY3 E;  3UK3 C;  4JI4 E;  2LRS A;  2EMB A;  5LL6 R;  4DR2 E;  4LF6 E;  1YUJ A;  2NA2 A;  2ENC A;  2PRT A;  3ADL A;  2EN8 A;  2EMZ A;  4DR1 E;  2DB2 A;  4L5N C;  3EPJ A;  1T38 A;  1XNR E;  2EPU A;  4R2C A;  2N3H A;  4F9A B;  4P7D A;  4OX9 E;  1EKZ A; 
#chains in the Genus database with same CATH homology
 2R76 A;  5TSE A;  4RH8 A;  4KWY A;  4RHB B;  3BF2 A;  4Q35 B;  2N8X A;  4NHR A;  5IV8 B;  2JXP A;  5IXM B;  4N4R B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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