5IYBF

Human core-pic in the open state
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
86
structure length
86
Chain Sequence
GERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription, transferase/dna
molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Near-atomic resolution visualization of human transcription promoter opening.
pubmed doi rcsb
source organism Homo sapiens
total genus 20
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 5iybF00
3GTJF 4LK0E 4OIPE 1TWHF 4X6AF 2E2HF 4LK1E 5E17E 1Y1VF 4LJZE 2PPBE 3S2HF 1TWCF 3S1QF 5TMCE 5IP9F 5M3FF 4YG2E 3GTPF 1TWFF 4Y7NF 2A6HE 3EQLE 2E2JF 3S1NF 5BYHE 2JA7F 2NVTF 3S2DF 3CQZF 3GTGF 3RZOF 5IYBF 3M4OF 4AYBK 5M5YF 5FJ8F 3WODE 5D4DE 2JA5F 2BE5E 4G7OE 3S17F 2YU9F 3S1RF 3M3YF 4A3FF 3HKZK 4YFKE 4A3CF 5D4CE 4A3IF 2VUMF 4C2MF 4A3MF 4C3HF 4G7ZE 2JA6F 5C4JF 3GTLF 2B63F 4A3KF 4MEXE 3HOYF 4GZYE 3H3VG 4A3BF 2R92F 3GTQF 1TWAF 1I6HF 2O5JE 3GTKF 4C3JF 1I6VE 1IW7E 2WAQK 3GTOF 3I4NF 2R7ZF 4ZH4E 5IYCF 5C44F 3DXJE 3HOZF 4BXXF 1YNNK 4Q5SE 4OINE 4XLNE 1HQME 4MEYE 4G7HE 4A93F 4KN7E 5FLMF 3H0GF 1YNJK 4LLGE 2A6EE 3HOWF 4KN4E 1I3QF 3I4MF 4XLPE 2PMZK 4XSXE 4BBRF 3PO3F 5C3EF 3S1MF 3PO2F 4Y52F 4YFNE 1SMYE 5IPLE 2NVYF 2NVXF 5E18E 4A3JF 1I50F 3S14F 5M5WF 4OIOE 2R93F 4A3GF 5M5XF 3HOUF 1K83F 2A68E 4A3EF 2NVQF 2Y0SI 2E2IF 5IP7F 5TMFE 4A3LF 3FKIF 3S16F 5M3MF 2WB1I 3HOVF 3RZDF 4OIQE 4YFXE 3K7AF 1Y1WF 2A69E 1QKLA 4JK1E 4BY1F 4BY7F 5C4XF 3GTMF 5D4EE 4BBSF 4A3DF 4Q4ZE 1ZYRE 1R9TF 1TWGF 3HOXF 3S15F 4KMUE 1SFOF 1WCMF 5IYDF 2CW0E 4OIRE 2O5IE 4C3IF 2JA8F 4MQ9E 4XSZE
chains in the Genus database with same CATH superfamily
4A3CE 4A3IE 3GTJF 4LK0E 4OIPE 1TWHF 2VUME 2E2HF 4X6AF 4LK1E 4C2ME 4C3HE 1Y1VE 4A3ME 5E17E 1Y1VF 4LJZE 2PPBE 1TWCE 2JA6E 3S2HF 5C4JE 1TWCF 3GTLE 2B63E 3S2HE 5TMCE 5M3FE 3S1QF 4A3KE 5IP9F 5M3FF 3HOYE 4YG2E 4A3BE 3GTPF 1TWFF 4Y7NF 2A6HE 3EQLE 1TWAE 2PMZH 2E2JF 3S1NF 5BYHE 2JA7F 2NVTF 3GTKE 4C3JE 3S2DF 3S2DE 3CQZF 3GTGF 3GTOE 3I4NE 3RZOF 2R7ZE 4QIWH 5C44E 5IYBF 3M4OE 3HOZE 3M4OF 4AYBK 4BXXE 5M5YF 5FJ8F 2R93E 4A93E 3WODE 5D4DE 3H0GE 2JA5F 2BE5E 4G7OE 1EIKA 3S1RE 3M3YE 4A3FE 2YU9F 3S1RF 3M3YF 4A3FF 3S17F 3HKZK 4YFKE 4A3CF 5D4CE 4A3IF 2VUMF 4C2MF 4A3MF 4C3HF 1I3QE 4G7ZE 2JA6F 5C4JF 4BBRE 3GTLF 2B63F 3PO3E 5C3EE 4A3KF 4MEXE 3S1ME 3HOYF 4GZYE 3H3VG 3PO2E 2R92E 4Y52E 3GTQE 4A3BF 2R92F 3GTQF 1I6HE 1TWAF 1I6HF 2O5JE 2NVYE 2NVXE 3GTKF 4C3JF 4A3JE 1I6VE 3S14E 5M5WE 1IW7E 2WAQK 5IYCE 3GTOF 3I4NF 4ZH4E 5IYCF 5C44F 2R7ZF 3DXJE 3HOZF 4BXXF 5M5XE 1YNNK 1K83E 3HOUE 4A3GE 4Q5SE 4OINE 4XLNE 1HQME 4MEYE 5FLME 4G7HE 2NVQE 4KN7E 5FLMF 4A93F 2KRXA 2E2IE 3H0GF 5IP7E 1YNJK 4LLGE 4A3LE 3FKIE 2A6EE 2Y0SH 3S16E 5M3ME 3HOWE 3HOWF 4KN4E 3RZDE 1I3QF 3I4ME 3I4MF 2WB1H 4XLPE 2PMZK 1Y1WE 3H3VF 4XSXE 4BBRF 4BY1E 3PO3F 5C3EF 3S1MF 5C4XE 3GTME 3PO2F 4BBSE 4Y52F 4YFNE 4A3DE 1SMYE 1TWGE 5IPLE 3S15E 2NVYF 2NVXF 1I50E 5E18E 4A3JF 1SFOE 1I50F 1WCME 5IYDE 5M5WF 3S14F 4OIOE 2R93F 4AYBH 2JA8E 1DZFA 4A3GF 5M5XF 3HOUF 1K83F 2A68E 3GTJE 4X6AE 1TWHE 2E2HE 4A3EE 4A3EF 2NVQF 2Y0SI 2E2IF 5IP7F 5TMFE 4A3LF 3HKZH 3S1QE 3FKIF 3S16F 3HOVE 5M3MF 2WB1I 5IP9E 3HOVF 3K7AE 3RZDF 4OIQE 1TWFE 3K7AF 4YFXE 4Y7NE 3GTPE 2E2JE 3S1NE 1Y1WF 2NVTE 2A69E 1QKLA 2JA7E 4JK1E 3CQZE 4BY1F 3GTGE 4BY7E 4BY7F 3RZOE 5C4XF 3GTMF 4QIWK 5D4EE 5IYBE 4BBSF 5M5YE 4A3DF 4Q4ZE 5FJ8E 1R9TE 1ZYRE 3HOXE 1R9TF 1TWGF 3HOXF 3S15F 4KMUE 1SFOF 1WCMF 2WAQH 5IYDF 2CW0E 4C3IE 2JA5E 4OIRE 2O5IE 4C3IF 3S17E 2YU9E 2JA8F 4MQ9E 4XSZE
chains in the Genus database with same CATH topology
3GTJF 4LK0E 4OIPE 1TWHF 4X6AF 2E2HF 4LK1E 5E17E 1Y1VF 4LJZE 2PPBE 3S2HF 1TWCF 3S1QF 5TMCE 5IP9F 5M3FF 4YG2E 3GTPF 1TWFF 4Y7NF 2A6HE 3EQLE 2E2JF 3S1NF 5BYHE 2JA7F 2NVTF 3S2DF 3CQZF 3GTGF 3RZOF 5IYBF 3M4OF 4AYBK 5M5YF 5FJ8F 3WODE 5D4DE 2JA5F 2BE5E 4G7OE 3S17F 2YU9F 3S1RF 3M3YF 4A3FF 3HKZK 4YFKE 4A3CF 5D4CE 4A3IF 2VUMF 4C2MF 4A3MF 4C3HF 4G7ZE 2JA6F 5C4JF 3GTLF 2B63F 4A3KF 4MEXE 3HOYF 4GZYE 3H3VG 4A3BF 2R92F 3GTQF 1TWAF 1I6HF 2O5JE 3GTKF 4C3JF 1I6VE 1IW7E 2WAQK 3GTOF 3I4NF 2R7ZF 4ZH4E 5IYCF 5C44F 3DXJE 3HOZF 4BXXF 1YNNK 4Q5SE 4OINE 4XLNE 1HQME 4MEYE 4G7HE 4A93F 4KN7E 5FLMF 2KRXA 3H0GF 1YNJK 4LLGE 2A6EE 3HOWF 4KN4E 1I3QF 3I4MF 4XLPE 2PMZK 4XSXE 4BBRF 3PO3F 5C3EF 3S1MF 3PO2F 4Y52F 4YFNE 1SMYE 5IPLE 2NVYF 2NVXF 5E18E 4A3JF 1I50F 3S14F 5M5WF 4OIOE 2R93F 4A3GF 5M5XF 3HOUF 1K83F 2A68E 4A3EF 2NVQF 2Y0SI 2E2IF 5IP7F 5TMFE 4A3LF 3FKIF 3S16F 5M3MF 2WB1I 3HOVF 3RZDF 4OIQE 4YFXE 3K7AF 1Y1WF 2A69E 1QKLA 4JK1E 4BY1F 4BY7F 5C4XF 3GTMF 4QIWK 5D4EE 4BBSF 4A3DF 4Q4ZE 1ZYRE 1R9TF 1TWGF 3HOXF 3S15F 4KMUE 1SFOF 1WCMF 5IYDF 2CW0E 4OIRE 2O5IE 4C3IF 2JA8F 4MQ9E 4XSZE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTJ F;  4LK0 E;  4OIP E;  1TWH F;  4X6A F;  2E2H F;  4LK1 E;  5E17 E;  1Y1V F;  4LJZ E;  2PPB E;  3S2H F;  1TWC F;  3S1Q F;  5TMC E;  5IP9 F;  5M3F F;  4YG2 E;  3GTP F;  1TWF F;  4Y7N F;  2A6H E;  3EQL E;  2E2J F;  3S1N F;  5BYH E;  2JA7 F;  2NVT F;  3S2D F;  3CQZ F;  3GTG F;  3RZO F;  5IYB F;  3M4O F;  4AYB K;  5M5Y F;  5FJ8 F;  3WOD E;  5D4D E;  2JA5 F;  2BE5 E;  4G7O E;  3S17 F;  2YU9 F;  3S1R F;  3M3Y F;  4A3F F;  3HKZ K;  4YFK E;  4A3C F;  5D4C E;  4A3I F;  2VUM F;  4C2M F;  4A3M F;  4C3H F;  4G7Z E;  2JA6 F;  5C4J F;  3GTL F;  2B63 F;  4A3K F;  4MEX E;  3HOY F;  4GZY E;  3H3V G;  4A3B F;  2R92 F;  3GTQ F;  1TWA F;  1I6H F;  2O5J E;  3GTK F;  4C3J F;  1I6V E;  1IW7 E;  2WAQ K;  3GTO F;  3I4N F;  2R7Z F;  4ZH4 E;  5IYC F;  5C44 F;  3DXJ E;  3HOZ F;  4BXX F;  1YNN K;  4Q5S E;  4OIN E;  4XLN E;  1HQM E;  4MEY E;  4G7H E;  4A93 F;  4KN7 E;  5FLM F;  3H0G F;  1YNJ K;  4LLG E;  2A6E E;  3HOW F;  4KN4 E;  1I3Q F;  3I4M F;  4XLP E;  2PMZ K;  4XSX E;  4BBR F;  3PO3 F;  5C3E F;  3S1M F;  3PO2 F;  4Y52 F;  4YFN E;  1SMY E;  5IPL E;  2NVY F;  2NVX F;  5E18 E;  4A3J F;  1I50 F;  3S14 F;  5M5W F;  4OIO E;  2R93 F;  4A3G F;  5M5X F;  3HOU F;  1K83 F;  2A68 E;  4A3E F;  2NVQ F;  2Y0S I;  2E2I F;  5IP7 F;  5TMF E;  4A3L F;  3FKI F;  3S16 F;  5M3M F;  2WB1 I;  3HOV F;  3RZD F;  4OIQ E;  4YFX E;  3K7A F;  1Y1W F;  2A69 E;  1QKL A;  4JK1 E;  4BY1 F;  4BY7 F;  5C4X F;  3GTM F;  5D4E E;  4BBS F;  4A3D F;  4Q4Z E;  1ZYR E;  1R9T F;  1TWG F;  3HOX F;  3S15 F;  4KMU E;  1SFO F;  1WCM F;  5IYD F;  2CW0 E;  4OIR E;  2O5I E;  4C3I F;  2JA8 F;  4MQ9 E;  4XSZ E; 
#chains in the Genus database with same CATH topology
 4A3C E;  4A3I E;  3GTJ F;  4LK0 E;  4OIP E;  1TWH F;  2VUM E;  2E2H F;  4X6A F;  4LK1 E;  4C2M E;  4C3H E;  1Y1V E;  4A3M E;  5E17 E;  1Y1V F;  4LJZ E;  2PPB E;  1TWC E;  2JA6 E;  3S2H F;  5C4J E;  1TWC F;  3GTL E;  2B63 E;  3S2H E;  5TMC E;  5M3F E;  3S1Q F;  4A3K E;  5IP9 F;  5M3F F;  3HOY E;  4YG2 E;  4A3B E;  3GTP F;  1TWF F;  4Y7N F;  2A6H E;  3EQL E;  1TWA E;  2PMZ H;  2E2J F;  3S1N F;  5BYH E;  2JA7 F;  2NVT F;  3GTK E;  4C3J E;  3S2D F;  3S2D E;  3CQZ F;  3GTG F;  3GTO E;  3I4N E;  3RZO F;  2R7Z E;  4QIW H;  5C44 E;  5IYB F;  3M4O E;  3HOZ E;  3M4O F;  4AYB K;  4BXX E;  5M5Y F;  5FJ8 F;  2R93 E;  4A93 E;  3WOD E;  5D4D E;  3H0G E;  2JA5 F;  2BE5 E;  4G7O E;  1EIK A;  3S1R E;  3M3Y E;  4A3F E;  2YU9 F;  3S1R F;  3M3Y F;  4A3F F;  3S17 F;  3HKZ K;  4YFK E;  4A3C F;  5D4C E;  4A3I F;  2VUM F;  4C2M F;  4A3M F;  4C3H F;  1I3Q E;  4G7Z E;  2JA6 F;  5C4J F;  4BBR E;  3GTL F;  2B63 F;  3PO3 E;  5C3E E;  4A3K F;  4MEX E;  3S1M E;  3HOY F;  4GZY E;  3H3V G;  3PO2 E;  2R92 E;  4Y52 E;  3GTQ E;  4A3B F;  2R92 F;  3GTQ F;  1I6H E;  1TWA F;  1I6H F;  2O5J E;  2NVY E;  2NVX E;  3GTK F;  4C3J F;  4A3J E;  1I6V E;  3S14 E;  5M5W E;  1IW7 E;  2WAQ K;  5IYC E;  3GTO F;  3I4N F;  4ZH4 E;  5IYC F;  5C44 F;  2R7Z F;  3DXJ E;  3HOZ F;  4BXX F;  5M5X E;  1YNN K;  1K83 E;  3HOU E;  4A3G E;  4Q5S E;  4OIN E;  4XLN E;  1HQM E;  4MEY E;  5FLM E;  4G7H E;  2NVQ E;  4KN7 E;  5FLM F;  4A93 F;  2KRX A;  2E2I E;  3H0G F;  5IP7 E;  1YNJ K;  4LLG E;  4A3L E;  3FKI E;  2A6E E;  2Y0S H;  3S16 E;  5M3M E;  3HOW E;  3HOW F;  4KN4 E;  3RZD E;  1I3Q F;  3I4M E;  3I4M F;  2WB1 H;  4XLP E;  2PMZ K;  1Y1W E;  3H3V F;  4XSX E;  4BBR F;  4BY1 E;  3PO3 F;  5C3E F;  3S1M F;  5C4X E;  3GTM E;  3PO2 F;  4BBS E;  4Y52 F;  4YFN E;  4A3D E;  1SMY E;  1TWG E;  5IPL E;  3S15 E;  2NVY F;  2NVX F;  1I50 E;  5E18 E;  4A3J F;  1SFO E;  1I50 F;  1WCM E;  5IYD E;  5M5W F;  3S14 F;  4OIO E;  2R93 F;  4AYB H;  2JA8 E;  1DZF A;  4A3G F;  5M5X F;  3HOU F;  1K83 F;  2A68 E;  3GTJ E;  4X6A E;  1TWH E;  2E2H E;  4A3E E;  4A3E F;  2NVQ F;  2Y0S I;  2E2I F;  5IP7 F;  5TMF E;  4A3L F;  3HKZ H;  3S1Q E;  3FKI F;  3S16 F;  3HOV E;  5M3M F;  2WB1 I;  5IP9 E;  3HOV F;  3K7A E;  3RZD F;  4OIQ E;  1TWF E;  3K7A F;  4YFX E;  4Y7N E;  3GTP E;  2E2J E;  3S1N E;  1Y1W F;  2NVT E;  2A69 E;  1QKL A;  2JA7 E;  4JK1 E;  3CQZ E;  4BY1 F;  3GTG E;  4BY7 E;  4BY7 F;  3RZO E;  5C4X F;  3GTM F;  4QIW K;  5D4E E;  5IYB E;  4BBS F;  5M5Y E;  4A3D F;  4Q4Z E;  5FJ8 E;  1R9T E;  1ZYR E;  3HOX E;  1R9T F;  1TWG F;  3HOX F;  3S15 F;  4KMU E;  1SFO F;  1WCM F;  2WAQ H;  5IYD F;  2CW0 E;  4C3I E;  2JA5 E;  4OIR E;  2O5I E;  4C3I F;  3S17 E;  2YU9 E;  2JA8 F;  4MQ9 E;  4XSZ E; 
#chains in the Genus database with same CATH homology
 3GTJ F;  4LK0 E;  4OIP E;  1TWH F;  4X6A F;  2E2H F;  4LK1 E;  5E17 E;  1Y1V F;  4LJZ E;  2PPB E;  3S2H F;  1TWC F;  3S1Q F;  5TMC E;  5IP9 F;  5M3F F;  4YG2 E;  3GTP F;  1TWF F;  4Y7N F;  2A6H E;  3EQL E;  2E2J F;  3S1N F;  5BYH E;  2JA7 F;  2NVT F;  3S2D F;  3CQZ F;  3GTG F;  3RZO F;  5IYB F;  3M4O F;  4AYB K;  5M5Y F;  5FJ8 F;  3WOD E;  5D4D E;  2JA5 F;  2BE5 E;  4G7O E;  3S17 F;  2YU9 F;  3S1R F;  3M3Y F;  4A3F F;  3HKZ K;  4YFK E;  4A3C F;  5D4C E;  4A3I F;  2VUM F;  4C2M F;  4A3M F;  4C3H F;  4G7Z E;  2JA6 F;  5C4J F;  3GTL F;  2B63 F;  4A3K F;  4MEX E;  3HOY F;  4GZY E;  3H3V G;  4A3B F;  2R92 F;  3GTQ F;  1TWA F;  1I6H F;  2O5J E;  3GTK F;  4C3J F;  1I6V E;  1IW7 E;  2WAQ K;  3GTO F;  3I4N F;  2R7Z F;  4ZH4 E;  5IYC F;  5C44 F;  3DXJ E;  3HOZ F;  4BXX F;  1YNN K;  4Q5S E;  4OIN E;  4XLN E;  1HQM E;  4MEY E;  4G7H E;  4A93 F;  4KN7 E;  5FLM F;  2KRX A;  3H0G F;  1YNJ K;  4LLG E;  2A6E E;  3HOW F;  4KN4 E;  1I3Q F;  3I4M F;  4XLP E;  2PMZ K;  4XSX E;  4BBR F;  3PO3 F;  5C3E F;  3S1M F;  3PO2 F;  4Y52 F;  4YFN E;  1SMY E;  5IPL E;  2NVY F;  2NVX F;  5E18 E;  4A3J F;  1I50 F;  3S14 F;  5M5W F;  4OIO E;  2R93 F;  4A3G F;  5M5X F;  3HOU F;  1K83 F;  2A68 E;  4A3E F;  2NVQ F;  2Y0S I;  2E2I F;  5IP7 F;  5TMF E;  4A3L F;  3FKI F;  3S16 F;  5M3M F;  2WB1 I;  3HOV F;  3RZD F;  4OIQ E;  4YFX E;  3K7A F;  1Y1W F;  2A69 E;  1QKL A;  4JK1 E;  4BY1 F;  4BY7 F;  5C4X F;  3GTM F;  4QIW K;  5D4E E;  4BBS F;  4A3D F;  4Q4Z E;  1ZYR E;  1R9T F;  1TWG F;  3HOX F;  3S15 F;  4KMU E;  1SFO F;  1WCM F;  5IYD F;  2CW0 E;  4OIR E;  2O5I E;  4C3I F;  2JA8 F;  4MQ9 E;  4XSZ E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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