5JDPA

E73v mutant of the human voltage-dependent anion channel
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
285
structure length
285
Chain Sequence
SAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTVKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQARS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Voltage-dependent anion-selective channel protein 1
publication title High-Resolution NMR Determination of the Dynamic Structure of Membrane Proteins.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Membrane protein
total genus 56
structure length 285
sequence length 285
ec nomenclature
pdb deposition date 2016-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01459 Porin_3 Eukaryotic porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5jdpA00
3HW9A 4FRXA 2FGQX 3SY7A 2FGRA 4FT6A 1GFOA 1H6S1 3SZVA 2XE1A 4AUIA 1GFPA 1GFMA 1BH3A 3PRNA 3K19A 2Y2XA 2PORA 4RJWA 3SYSA 5DL8A 3UPGA 3JTYA 4D64A 5DL7A 4FSOA 4JFBA 1E54A 2ODJA 3T20A 2XE2A 4GCSA 6PRNA 2J1NA 3VY8X 8PRNA 4D65A 2O4VA 4D5UA 1HXTA 4FMSA 5DL5A 2ZLDA 2PRNA 3POUA 3VZTX 3A2SX 5FVNA 2Y0LA 1GFNA 3HWBA 4KRAA 3VY9X 1OSMA 3T24A 4GCPA 4FRTA 4LSEA 2K4TA 3FYXA 4KR8A 4GCQA 3POQA 3WI4A 2Y0KA 4BUMX 4C69X 4FOZA 3SZDA 1PHOA 1HXXA 2XG6A 2QTKA 1OPFA 1BT9A 4KR4A 2XE3A 2J4UP 3UU2A 3SYBA 2OMFA 5DL6A 3NSGA 3O0EA 1MPFA 4RJXA 1PRNA 4FSPA 2ZFGA 1GFQA 2XE5A 3PORA 5JDPA 3T0SA 3VZWX 2Y0HA 7PRNA 5PRNA 3POXA 3EMNX 4LSIA 3VZUX 3SY9A 1HXUA 3WI5A 4LSFA 4LSHA
chains in the Genus database with same CATH superfamily
3HW9A 4FRXA 2FGQX 3AA0A 2AXTO 3SY7A 2FGRA 2R4OA 2XMXA 1IZNB 4FT6A 1GFOA 4C4VA 4AKRB 1MM4A 3C5OA 3LK41 4PJ0O 1H6S1 2R4PA 2YNKA 2XE1A 3PGUA 3AAEB 3SZVA 3V8UA 2XTQA 4GF4A 4AUIA 5AFUL 1QJPA 1GFPA 2F1TA 1GFMA 1BH3A 1ZHYA 3DWNA 3LK42 4G76A 3PRNA 2R4NA 4AYMC 2MNHA 3K19A 4AZLA 2Y2XA 2PORA 4CTDA 4RJWA 3SYSA 2KDYA 4O3YA 2WVPA 4AYEC 5DL8A 3UPGA 5KAIO 2Y7SA 3AA7A 3AA0B 3JTYA 4FESA 3VE2A 3DWOX 4D64A 5DL7A 1BXWA 4FSOA 3DA4A 4N59A 4C4VB 4JFBA 1E54A 1ZHTA 2ODJA 2WJRA 1Q9GA 4B61A 3T20A 2LFUA 1MM5A 3NJTA 2XE2A 3PGRA 2M06A 4FZMA 4GCSA 2F1CX 4PR7A 6PRNA 3AAAA 3AA1A 2J1NA 3VY8X 2GE4A 8PRNA 4D65A 1T1LA 4U9CA 5GTHO 3AA7B 3PF1A 2O4VA 4D5UA 1HXTA 1ZHWA 4FMSA 3DA3A 4N74A 5DL5A 2ZLDA 1P4TA 2PRNA 3POUA 5G39A 3VZTX 3HOEA 5B66O 4O4XA 4AYID 3A2SX 4O3WA 5E79O 4UB8O 2KZ7A 2R89A 5FVNA 1ORMA 2R4LA 2W80C 2Y0LA 1GFNA 3HWBA 3AAAB 2IWVA 3AA1B 4FUVA 4IL6O 4KRAA 4RLCA 5KAFO 4O49A 3AA6A 3VY9X 5ADXL 1OSMA 1S5LO 3DZMA 4C00A 2KXPA 4JCHA 1ZHZA 3T24A 4AYNA 4GCPA 4FRTA 4LSEA 4O3ZA 5G26A 2K4TA 2WJQA 3FYXA 4KR8A 5EE2A 3UAQA 4AFKA 4E1TA 1QJ8A 2R8AA 2KC0A 4GCQA 3POQA 4Z3TA 5B5EO 3WI4A 2KZ7B 2R88A 2Y0KA 2ERVA 4BUMX 4C69X 1THQA 4K3BA 4FOZA 5D5DA 3SZDA 4LSFA 1PHOA 1ZHXA 3A0HO 3AA6B 1HXXA 2XG6A 4FQEA 1T16A 5GTIO 2QTKA 1OPFA 2M07A 3LK2A 5T5FA 3TZGA 1BT9A 2KXPB 2YPVA 4KR4A 2JMMA 5G3AA 1YS5A 1QJ9A 2F1VA 3A0BO 4N75A 2XTRA 5G38A 2XE3A 3BRZA 5H2FO 2J4UP 3UU2A 5GV0A 4K3CA 3RBHA 2IWWA 3BS0A 4O4UA 3KZIO 4AYDC 1Q9FA 3SYBA 2OMFA 3HOLA 3JCUO 3LK3A 4RL9A 5ADXK 2W81C 4GHBA 4AKMA 5AFUK 3LK2B 4FZNA 5DL6A 2MHLA 2N2LA 4E1SA 3GP6A 3NSGA 3O0EA 1MPFA 4RJXA 4FZLA 3KVDD 4RLBA 3G7GA 2JQYA 3PGSA 1PRNA 4XNLA 2X27X 2X9KA 2ZFGA 4FSPA 4G75A 4N58A 1IZNA 1GFQA 2XE5A 3PORA 5IYUA 4AKRA 5JDPA 3PQUA 4PUXA 3T0SA 3VZWX 2Y0HA 1G90A 3AAEA 3LK3B 3POXA 3EMNX 4LSIA 5PRNA 3VZUX 3WU2O 4O3XB 7PRNA 2N2MA 4XNKA 3SY9A 3BRYA 3QRCA 3QRAA 4F4BA 1HXUA 3PQSA 4QQ1A 2LHFA 3WI5A 4UB6O 2K0LA 3VE1A 5TISO 4LSHA
chains in the Genus database with same CATH topology
3HW9A 4FRXA 2FGQX 3AA0A 3SY7A 2FGRA 2XMXA 1IZNB 4FT6A 1GFOA 4AKRB 1MM4A 3C5OA 3LK41 1H6S1 2YNKA 3SZVA 2XE1A 3V8UA 3AAEB 4AUIA 2XTQA 4GF4A 1QJPA 1GFPA 2F1TA 1GFMA 1BH3A 1ZHYA 3LK42 4G76A 3PRNA 4AYMC 2MNHA 3K19A 4AZLA 2Y2XA 2PORA 4RJWA 3SYSA 2KDYA 4O3YA 4AYEC 5DL8A 3UPGA 2Y7SA 3AA7A 3AA0B 3JTYA 4FESA 3VE2A 4D64A 5DL7A 1BXWA 4FSOA 3DA4A 4N59A 4JFBA 1E54A 1ZHTA 2ODJA 4B61A 1Q9GA 3T20A 2LFUA 1MM5A 2XE2A 2M06A 4FZMA 4GCSA 6PRNA 3AAAA 3AA1A 2J1NA 3VY8X 2GE4A 8PRNA 4D65A 4U9CA 3AA7B 2O4VA 4D5UA 1HXTA 1ZHWA 4FMSA 3DA3A 5DL5A 2ZLDA 1P4TA 2PRNA 3POUA 3VZTX 3HOEA 4O4XA 4AYID 3A2SX 4O3WA 2KZ7A 5FVNA 1ORMA 2W80C 2Y0LA 1GFNA 3HWBA 3AAAB 4FUVA 3AA1B 4RLCA 4KRAA 4O49A 3AA6A 3VY9X 5ADXL 1OSMA 2KXPA 4JCHA 1ZHZA 3T24A 4AYNA 4GCPA 4FRTA 4LSEA 4O3ZA 5G26A 2K4TA 5AFUL 3FYXA 4KR8A 5EE2A 3UAQA 4AFKA 4E1TA 1QJ8A 2KC0A 4GCQA 3POQA 4Z3TA 3WI4A 2KZ7B 2Y0KA 2ERVA 4BUMX 4C69X 1THQA 4FOZA 5D5DA 3SZDA 4LSFA 1PHOA 1ZHXA 3AA6B 1HXXA 2XG6A 4E1SA 5T5FA 2QTKA 1OPFA 2M07A 3LK2A 3TZGA 1BT9A 2KXPB 2YPVA 4KR4A 2JMMA 1YS5A 1QJ9A 2F1VA 2XTRA 2XE3A 2J4UP 3UU2A 5GV0A 3RBHA 4O4UA 4AYDC 1Q9FA 3SYBA 2OMFA 3HOLA 3LK3A 4RL9A 5ADXK 2W81C 4GHBA 4AKMA 5AFUK 3LK2B 4FZNA 5DL6A 2MHLA 2N2LA 3GP6A 3NSGA 3O0EA 1MPFA 4RJXA 4FZLA 3KVDD 4RLBA 3G7GA 1PRNA 4XNLA 2X27X 4FSPA 2ZFGA 4G75A 4N58A 1IZNA 1GFQA 2XE5A 3PORA 5IYUA 4AKRA 5JDPA 3PQUA 4PUXA 3T0SA 3VZWX 2Y0HA 1G90A 3AAEA 3LK3B 3POXA 3EMNX 4LSIA 5PRNA 3VZUX 7PRNA 4O3XB 2N2MA 4XNKA 3SY9A 3QRCA 3QRAA 4F4BA 1HXUA 3PQSA 4QQ1A 2LHFA 3WI5A 2K0LA 3VE1A 4LSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HW9 A;  4FRX A;  2FGQ X;  3SY7 A;  2FGR A;  4FT6 A;  1GFO A;  1H6S 1;  3SZV A;  2XE1 A;  4AUI A;  1GFP A;  1GFM A;  1BH3 A;  3PRN A;  3K19 A;  2Y2X A;  2POR A;  4RJW A;  3SYS A;  5DL8 A;  3UPG A;  3JTY A;  4D64 A;  5DL7 A;  4FSO A;  4JFB A;  1E54 A;  2ODJ A;  3T20 A;  2XE2 A;  4GCS A;  6PRN A;  2J1N A;  3VY8 X;  8PRN A;  4D65 A;  2O4V A;  4D5U A;  1HXT A;  4FMS A;  5DL5 A;  2ZLD A;  2PRN A;  3POU A;  3VZT X;  3A2S X;  5FVN A;  2Y0L A;  1GFN A;  3HWB A;  4KRA A;  3VY9 X;  1OSM A;  3T24 A;  4GCP A;  4FRT A;  4LSE A;  2K4T A;  3FYX A;  4KR8 A;  4GCQ A;  3POQ A;  3WI4 A;  2Y0K A;  4BUM X;  4C69 X;  4FOZ A;  3SZD A;  1PHO A;  1HXX A;  2XG6 A;  2QTK A;  1OPF A;  1BT9 A;  4KR4 A;  2XE3 A;  2J4U P;  3UU2 A;  3SYB A;  2OMF A;  5DL6 A;  3NSG A;  3O0E A;  1MPF A;  4RJX A;  1PRN A;  4FSP A;  2ZFG A;  1GFQ A;  2XE5 A;  3POR A;  5JDP A;  3T0S A;  3VZW X;  2Y0H A;  7PRN A;  5PRN A;  3POX A;  3EMN X;  4LSI A;  3VZU X;  3SY9 A;  1HXU A;  3WI5 A;  4LSF A;  4LSH A; 
#chains in the Genus database with same CATH topology
 3HW9 A;  4FRX A;  2FGQ X;  3AA0 A;  2AXT O;  3SY7 A;  2FGR A;  2R4O A;  2XMX A;  1IZN B;  4FT6 A;  1GFO A;  4C4V A;  4AKR B;  1MM4 A;  3C5O A;  3LK4 1;  4PJ0 O;  1H6S 1;  2R4P A;  2YNK A;  2XE1 A;  3PGU A;  3AAE B;  3SZV A;  3V8U A;  2XTQ A;  4GF4 A;  4AUI A;  5AFU L;  1QJP A;  1GFP A;  2F1T A;  1GFM A;  1BH3 A;  1ZHY A;  3DWN A;  3LK4 2;  4G76 A;  3PRN A;  2R4N A;  4AYM C;  2MNH A;  3K19 A;  4AZL A;  2Y2X A;  2POR A;  4CTD A;  4RJW A;  3SYS A;  2KDY A;  4O3Y A;  2WVP A;  4AYE C;  5DL8 A;  3UPG A;  5KAI O;  2Y7S A;  3AA7 A;  3AA0 B;  3JTY A;  4FES A;  3VE2 A;  3DWO X;  4D64 A;  5DL7 A;  1BXW A;  4FSO A;  3DA4 A;  4N59 A;  4C4V B;  4JFB A;  1E54 A;  1ZHT A;  2ODJ A;  2WJR A;  1Q9G A;  4B61 A;  3T20 A;  2LFU A;  1MM5 A;  3NJT A;  2XE2 A;  3PGR A;  2M06 A;  4FZM A;  4GCS A;  2F1C X;  4PR7 A;  6PRN A;  3AAA A;  3AA1 A;  2J1N A;  3VY8 X;  2GE4 A;  8PRN A;  4D65 A;  1T1L A;  4U9C A;  5GTH O;  3AA7 B;  3PF1 A;  2O4V A;  4D5U A;  1HXT A;  1ZHW A;  4FMS A;  3DA3 A;  4N74 A;  5DL5 A;  2ZLD A;  1P4T A;  2PRN A;  3POU A;  5G39 A;  3VZT X;  3HOE A;  5B66 O;  4O4X A;  4AYI D;  3A2S X;  4O3W A;  5E79 O;  4UB8 O;  2KZ7 A;  2R89 A;  5FVN A;  1ORM A;  2R4L A;  2W80 C;  2Y0L A;  1GFN A;  3HWB A;  3AAA B;  2IWV A;  3AA1 B;  4FUV A;  4IL6 O;  4KRA A;  4RLC A;  5KAF O;  4O49 A;  3AA6 A;  3VY9 X;  5ADX L;  1OSM A;  1S5L O;  3DZM A;  4C00 A;  2KXP A;  4JCH A;  1ZHZ A;  3T24 A;  4AYN A;  4GCP A;  4FRT A;  4LSE A;  4O3Z A;  5G26 A;  2K4T A;  2WJQ A;  3FYX A;  4KR8 A;  5EE2 A;  3UAQ A;  4AFK A;  4E1T A;  1QJ8 A;  2R8A A;  2KC0 A;  4GCQ A;  3POQ A;  4Z3T A;  5B5E O;  3WI4 A;  2KZ7 B;  2R88 A;  2Y0K A;  2ERV A;  4BUM X;  4C69 X;  1THQ A;  4K3B A;  4FOZ A;  5D5D A;  3SZD A;  4LSF A;  1PHO A;  1ZHX A;  3A0H O;  3AA6 B;  1HXX A;  2XG6 A;  4FQE A;  1T16 A;  5GTI O;  2QTK A;  1OPF A;  2M07 A;  3LK2 A;  5T5F A;  3TZG A;  1BT9 A;  2KXP B;  2YPV A;  4KR4 A;  2JMM A;  5G3A A;  1YS5 A;  1QJ9 A;  2F1V A;  3A0B O;  4N75 A;  2XTR A;  5G38 A;  2XE3 A;  3BRZ A;  5H2F O;  2J4U P;  3UU2 A;  5GV0 A;  4K3C A;  3RBH A;  2IWW A;  3BS0 A;  4O4U A;  3KZI O;  4AYD C;  1Q9F A;  3SYB A;  2OMF A;  3HOL A;  3JCU O;  3LK3 A;  4RL9 A;  5ADX K;  2W81 C;  4GHB A;  4AKM A;  5AFU K;  3LK2 B;  4FZN A;  5DL6 A;  2MHL A;  2N2L A;  4E1S A;  3GP6 A;  3NSG A;  3O0E A;  1MPF A;  4RJX A;  4FZL A;  3KVD D;  4RLB A;  3G7G A;  2JQY A;  3PGS A;  1PRN A;  4XNL A;  2X27 X;  2X9K A;  2ZFG A;  4FSP A;  4G75 A;  4N58 A;  1IZN A;  1GFQ A;  2XE5 A;  3POR A;  5IYU A;  4AKR A;  5JDP A;  3PQU A;  4PUX A;  3T0S A;  3VZW X;  2Y0H A;  1G90 A;  3AAE A;  3LK3 B;  3POX A;  3EMN X;  4LSI A;  5PRN A;  3VZU X;  3WU2 O;  4O3X B;  7PRN A;  2N2M A;  4XNK A;  3SY9 A;  3BRY A;  3QRC A;  3QRA A;  4F4B A;  1HXU A;  3PQS A;  4QQ1 A;  2LHF A;  3WI5 A;  4UB6 O;  2K0L A;  3VE1 A;  5TIS O;  4LSH A; 
#chains in the Genus database with same CATH homology
 3HW9 A;  4FRX A;  2FGQ X;  3AA0 A;  3SY7 A;  2FGR A;  2XMX A;  1IZN B;  4FT6 A;  1GFO A;  4AKR B;  1MM4 A;  3C5O A;  3LK4 1;  1H6S 1;  2YNK A;  3SZV A;  2XE1 A;  3V8U A;  3AAE B;  4AUI A;  2XTQ A;  4GF4 A;  1QJP A;  1GFP A;  2F1T A;  1GFM A;  1BH3 A;  1ZHY A;  3LK4 2;  4G76 A;  3PRN A;  4AYM C;  2MNH A;  3K19 A;  4AZL A;  2Y2X A;  2POR A;  4RJW A;  3SYS A;  2KDY A;  4O3Y A;  4AYE C;  5DL8 A;  3UPG A;  2Y7S A;  3AA7 A;  3AA0 B;  3JTY A;  4FES A;  3VE2 A;  4D64 A;  5DL7 A;  1BXW A;  4FSO A;  3DA4 A;  4N59 A;  4JFB A;  1E54 A;  1ZHT A;  2ODJ A;  4B61 A;  1Q9G A;  3T20 A;  2LFU A;  1MM5 A;  2XE2 A;  2M06 A;  4FZM A;  4GCS A;  6PRN A;  3AAA A;  3AA1 A;  2J1N A;  3VY8 X;  2GE4 A;  8PRN A;  4D65 A;  4U9C A;  3AA7 B;  2O4V A;  4D5U A;  1HXT A;  1ZHW A;  4FMS A;  3DA3 A;  5DL5 A;  2ZLD A;  1P4T A;  2PRN A;  3POU A;  3VZT X;  3HOE A;  4O4X A;  4AYI D;  3A2S X;  4O3W A;  2KZ7 A;  5FVN A;  1ORM A;  2W80 C;  2Y0L A;  1GFN A;  3HWB A;  3AAA B;  4FUV A;  3AA1 B;  4RLC A;  4KRA A;  4O49 A;  3AA6 A;  3VY9 X;  5ADX L;  1OSM A;  2KXP A;  4JCH A;  1ZHZ A;  3T24 A;  4AYN A;  4GCP A;  4FRT A;  4LSE A;  4O3Z A;  5G26 A;  2K4T A;  5AFU L;  3FYX A;  4KR8 A;  5EE2 A;  3UAQ A;  4AFK A;  4E1T A;  1QJ8 A;  2KC0 A;  4GCQ A;  3POQ A;  4Z3T A;  3WI4 A;  2KZ7 B;  2Y0K A;  2ERV A;  4BUM X;  4C69 X;  1THQ A;  4FOZ A;  5D5D A;  3SZD A;  4LSF A;  1PHO A;  1ZHX A;  3AA6 B;  1HXX A;  2XG6 A;  4E1S A;  5T5F A;  2QTK A;  1OPF A;  2M07 A;  3LK2 A;  3TZG A;  1BT9 A;  2KXP B;  2YPV A;  4KR4 A;  2JMM A;  1YS5 A;  1QJ9 A;  2F1V A;  2XTR A;  2XE3 A;  2J4U P;  3UU2 A;  5GV0 A;  3RBH A;  4O4U A;  4AYD C;  1Q9F A;  3SYB A;  2OMF A;  3HOL A;  3LK3 A;  4RL9 A;  5ADX K;  2W81 C;  4GHB A;  4AKM A;  5AFU K;  3LK2 B;  4FZN A;  5DL6 A;  2MHL A;  2N2L A;  3GP6 A;  3NSG A;  3O0E A;  1MPF A;  4RJX A;  4FZL A;  3KVD D;  4RLB A;  3G7G A;  1PRN A;  4XNL A;  2X27 X;  4FSP A;  2ZFG A;  4G75 A;  4N58 A;  1IZN A;  1GFQ A;  2XE5 A;  3POR A;  5IYU A;  4AKR A;  5JDP A;  3PQU A;  4PUX A;  3T0S A;  3VZW X;  2Y0H A;  1G90 A;  3AAE A;  3LK3 B;  3POX A;  3EMN X;  4LSI A;  5PRN A;  3VZU X;  7PRN A;  4O3X B;  2N2M A;  4XNK A;  3SY9 A;  3QRC A;  3QRA A;  4F4B A;  1HXU A;  3PQS A;  4QQ1 A;  2LHF A;  3WI5 A;  2K0L A;  3VE1 A;  4LSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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