5JDPA

E73v mutant of the human voltage-dependent anion channel
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
285
structure length
285
Chain Sequence
b'SAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTVKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQARS'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Voltage-dependent anion-selective channel protein 1
publication title High-Resolution NMR Determination of the Dynamic Structure of Membrane Proteins.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Membrane protein
total genus 56
structure length 285
sequence length 285
ec nomenclature
pdb deposition date 2016-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01459 Porin_3 Eukaryotic porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5jdpA00
4GCSA 4C69X 2K4TA 5JDPA 3O0EA 3POQA 4AUIA 3UPGA 3VY9X 2FGRA 3POXA 2XE3A 4FSPA 3PORA 7PRNA 3FYXA 1HXUA 3A2SX 3SZVA 1PHOA 4GCPA 3HWBA 1E54A 2Y0KA 2ZFGA 4FRTA 4KR4A 2PRNA 3VZWX 3JTYA 3VZTX 4FMSA 3WI5A 2OMFA 2QTKA 3T20A 4JFBA 3SY9A 2XE1A 5PRNA 2O4VA 4LSEA 3SY7A 1GFNA 2ZLDA 3SYSA 5DL8A 1HXXA 2J4UP 4LSIA 1HXTA 5DL5A 3VZUX 3K19A 3POUA 4KR8A 3WI4A 3NSGA 2ODJA 1PRNA 4LSHA 4RJWA 3HW9A 4D5UA 4D65A 3SYBA 2Y2XA 4FSOA 1GFPA 3VY8X 2J1NA 2PORA 4FRXA 6PRNA 4D64A 1GFOA 4GCQA 8PRNA 5FVNA 1H6S1 3UU2A 1BH3A 2FGQX 1MPFA 1OPFA 3SZDA 5DL7A 3EMNX 2Y0HA 1BT9A 3T0SA 2Y0LA 4LSFA 5DL6A 2XG6A 3PRNA 4FT6A 2XE2A 3T24A 1OSMA 1GFQA 4KRAA 4FOZA 2XE5A 4RJXA 1GFMA 4BUMX
chains in the Genus database with same CATH superfamily
3AA0A 4GCSA 4C69X 3LK41 4E1TA 4AKMA 2XTQA 3DWNA 2K4TA 4FESA 5JDPA 3O0EA 3PGUA 5GV0A 4FZNA 4UB8O 5E79O 4AKRA 3POQA 4AUIA 3UPGA 2W80C 3VY9X 3AAAB 3VE1A 1MM5A 1YS5A 2FGRA 3POXA 2XE3A 4XNLA 4Z3TA 4K3CA 4FSPA 3PORA 7PRNA 4O3XB 4O3ZA 5G26A 2R4OA 2R8AA 3LK3B 1QJ8A 3FYXA 1HXUA 3A2SX 3PGRA 2R4NA 3SZVA 1PHOA 3AAAA 4O3WA 4RL9A 2YPVA 2KZ7B 4AYMC 4GCPA 4FZLA 2LFUA 1T1LA 3HWBA 2F1VA 3DA3A 4XNKA 4QQ1A 3TZGA 1E54A 2Y0KA 3AAEB 3LK3A 2ZFGA 4FRTA 4KR4A 4AZLA 2PRNA 2MHLA 4GF4A 3VZWX 1THQA 4K3BA 2KZ7A 3JTYA 3LK2B 3AA6B 3VZTX 2N2LA 3V8UA 1ZHXA 4FMSA 5AFUL 3WI5A 5ADXL 3AAEA 2OMFA 2QTKA 2ERVA 3NJTA 3QRAA 2F1CX 4JFBA 5TISO 3SY9A 3BS0A 4B61A 3T20A 3PGSA 2XE1A 4AYNA 2WVPA 2O4VA 4PR7A 5PRNA 3LK2A 3AA6A 4LSEA 1GFNA 3G7GA 5D5DA 2X9KA 3SY7A 1T16A 2ZLDA 3AA7B 3SYSA 5DL8A 1HXXA 3WU2O 2YNKA 3JCUO 2J4UP 2K0LA 3PQSA 4LSIA 4FQEA 1HXTA 4D65A 4O4UA 4O49A 5DL5A 3VZUX 2R4LA 3PF1A 1ZHTA 2GE4A 3DA4A 4FUVA 3K19A 3UAQA 3POUA 4KR8A 1ORMA 3WI4A 3NSGA 2ODJA 1S5LO 3AA7A 4C00A 4AYDC 3DZMA 5G3AA 1PRNA 3HOLA 4RLCA 4IL6O 4LSHA 4N58A 4RJWA 4UB6O 3HW9A 1QJ9A 2W81C 3HOEA 3A0BO 2Y2XA 4N75A 1Q9FA 4FSOA 3SYBA 4N74A 4G75A 1GFPA 2WJRA 3VY8X 2KXPB 2J1NA 1P4TA 3A0HO 2PORA 1ZHWA 2IWVA 5KAIO 4AFKA 3AA0B 3LK42 2XMXA 3KZIO 3QRCA 4O4XA 4E1SA 4FRXA 3BRYA 1QJPA 6PRNA 4D64A 1GFOA 4GCQA 5H2FO 8PRNA 5FVNA 5EE2A 2IWWA 2KXPA 3GP6A 1H6S1 1ZHZA 2WJQA 3UU2A 3PQUA 5B5EO 1BH3A 2FGQX 1MPFA 4AYEC 4CTDA 4D5UA 5B66O 2R4PA 1MM4A 1OPFA 3DWOX 1ZHYA 2F1TA 5GTIO 1Q9GA 3SZDA 3AA1B 4AYID 4F4BA 2R89A 5DL7A 2AXTO 3EMNX 2Y0HA 5KAFO 3VE2A 1IZNB 1BT9A 2JMMA 3T0SA 4JCHA 5T5FA 5G39A 2JQYA 5IYUA 4N59A 4G76A 2Y0LA 4LSFA 4U9CA 2M06A 5DL6A 1BXWA 2M07A 2XG6A 3KVDD 3PRNA 4FT6A 3AA1A 4C4VB 2KDYA 4PUXA 3RBHA 5AFUK 5GTHO 2X27X 2XE2A 5ADXK 2LHFA 1G90A 2XTRA 3T24A 1IZNA 1OSMA 2KC0A 1GFQA 4GHBA 4O3YA 4KRAA 4FOZA 4RLBA 5G38A 2MNHA 2XE5A 2Y7SA 4AKRB 2R88A 2N2MA 4RJXA 3BRZA 1GFMA 4C4VA 4FZMA 4PJ0O 4BUMX 3C5OA
chains in the Genus database with same CATH topology
3AA0A 4GCSA 4C69X 3LK41 4E1TA 4AKMA 2XTQA 2K4TA 4FESA 5JDPA 3O0EA 5GV0A 4FZNA 4AKRA 3POQA 4AUIA 3UPGA 2W80C 3VY9X 3AAAB 3VE1A 1MM5A 1YS5A 2FGRA 3POXA 2XE3A 4XNLA 4Z3TA 4FSPA 3PORA 7PRNA 4O3XB 4O3ZA 5G26A 3LK3B 1QJ8A 3FYXA 1HXUA 3A2SX 3SZVA 1PHOA 3AAAA 4O3WA 4RL9A 2YPVA 2KZ7B 4AYMC 4GCPA 4FZLA 2LFUA 3HWBA 2F1VA 3DA3A 4XNKA 4QQ1A 3TZGA 1E54A 2Y0KA 3AAEB 3LK3A 2ZFGA 4FRTA 4KR4A 4AZLA 2PRNA 2MHLA 4GF4A 3VZWX 1THQA 2KZ7A 3JTYA 3LK2B 3AA6B 3VZTX 2N2LA 3V8UA 1ZHXA 4FMSA 5AFUL 3WI5A 5ADXL 3AAEA 2OMFA 2QTKA 2ERVA 4JFBA 3QRAA 3T20A 3SY9A 4B61A 2XE1A 4AYNA 5PRNA 2O4VA 3LK2A 3AA6A 4LSEA 1GFNA 3G7GA 5D5DA 3SY7A 2ZLDA 3AA7B 3SYSA 5DL8A 1HXXA 2J4UP 2YNKA 2K0LA 3PQSA 4LSIA 1HXTA 4O4UA 4O49A 5DL5A 3VZUX 1ZHTA 2GE4A 3DA4A 4FUVA 3K19A 3UAQA 3POUA 4KR8A 1ORMA 3WI4A 3NSGA 2ODJA 3AA7A 4AYDC 1PRNA 3HOLA 4RLCA 4LSHA 4N58A 4RJWA 3HW9A 1QJ9A 2W81C 3HOEA 3SYBA 2Y2XA 4D5UA 1Q9FA 4FSOA 4D65A 4G75A 1GFPA 3VY8X 2KXPB 2J1NA 1P4TA 2PORA 1ZHWA 4AFKA 3AA0B 3LK42 2XMXA 3QRCA 4O4XA 4E1SA 4FRXA 1QJPA 6PRNA 4D64A 1GFOA 4GCQA 8PRNA 5FVNA 5EE2A 2KXPA 3GP6A 1H6S1 1ZHZA 3UU2A 3PQUA 1BH3A 2FGQX 1MPFA 4AYEC 1MM4A 1OPFA 3SZDA 1ZHYA 2F1TA 4AYID 1Q9GA 4F4BA 3AA1B 5DL7A 3EMNX 2Y0HA 3VE2A 1IZNB 1BT9A 2JMMA 3T0SA 4JCHA 5T5FA 5IYUA 4N59A 4G76A 2Y0LA 4LSFA 4U9CA 2M06A 5DL6A 1BXWA 2M07A 2XG6A 3KVDD 3PRNA 4FT6A 3AA1A 2KDYA 4PUXA 3RBHA 5AFUK 2X27X 2XE2A 5ADXK 2LHFA 1G90A 2XTRA 3T24A 1IZNA 1OSMA 2KC0A 1GFQA 4GHBA 4O3YA 4KRAA 4FOZA 4RLBA 2MNHA 2XE5A 2Y7SA 4AKRB 2N2MA 4RJXA 1GFMA 4FZMA 4BUMX 3C5OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GCS A;  4C69 X;  2K4T A;  5JDP A;  3O0E A;  3POQ A;  4AUI A;  3UPG A;  3VY9 X;  2FGR A;  3POX A;  2XE3 A;  4FSP A;  3POR A;  7PRN A;  3FYX A;  1HXU A;  3A2S X;  3SZV A;  1PHO A;  4GCP A;  3HWB A;  1E54 A;  2Y0K A;  2ZFG A;  4FRT A;  4KR4 A;  2PRN A;  3VZW X;  3JTY A;  3VZT X;  4FMS A;  3WI5 A;  2OMF A;  2QTK A;  3T20 A;  4JFB A;  3SY9 A;  2XE1 A;  5PRN A;  2O4V A;  4LSE A;  3SY7 A;  1GFN A;  2ZLD A;  3SYS A;  5DL8 A;  1HXX A;  2J4U P;  4LSI A;  1HXT A;  5DL5 A;  3VZU X;  3K19 A;  3POU A;  4KR8 A;  3WI4 A;  3NSG A;  2ODJ A;  1PRN A;  4LSH A;  4RJW A;  3HW9 A;  4D5U A;  4D65 A;  3SYB A;  2Y2X A;  4FSO A;  1GFP A;  3VY8 X;  2J1N A;  2POR A;  4FRX A;  6PRN A;  4D64 A;  1GFO A;  4GCQ A;  8PRN A;  5FVN A;  1H6S 1;  3UU2 A;  1BH3 A;  2FGQ X;  1MPF A;  1OPF A;  3SZD A;  5DL7 A;  3EMN X;  2Y0H A;  1BT9 A;  3T0S A;  2Y0L A;  4LSF A;  5DL6 A;  2XG6 A;  3PRN A;  4FT6 A;  2XE2 A;  3T24 A;  1OSM A;  1GFQ A;  4KRA A;  4FOZ A;  2XE5 A;  4RJX A;  1GFM A;  4BUM X; 
#chains in the Genus database with same CATH topology
 3AA0 A;  4GCS A;  4C69 X;  3LK4 1;  4E1T A;  4AKM A;  2XTQ A;  3DWN A;  2K4T A;  4FES A;  5JDP A;  3O0E A;  3PGU A;  5GV0 A;  4FZN A;  4UB8 O;  5E79 O;  4AKR A;  3POQ A;  4AUI A;  3UPG A;  2W80 C;  3VY9 X;  3AAA B;  3VE1 A;  1MM5 A;  1YS5 A;  2FGR A;  3POX A;  2XE3 A;  4XNL A;  4Z3T A;  4K3C A;  4FSP A;  3POR A;  7PRN A;  4O3X B;  4O3Z A;  5G26 A;  2R4O A;  2R8A A;  3LK3 B;  1QJ8 A;  3FYX A;  1HXU A;  3A2S X;  3PGR A;  2R4N A;  3SZV A;  1PHO A;  3AAA A;  4O3W A;  4RL9 A;  2YPV A;  2KZ7 B;  4AYM C;  4GCP A;  4FZL A;  2LFU A;  1T1L A;  3HWB A;  2F1V A;  3DA3 A;  4XNK A;  4QQ1 A;  3TZG A;  1E54 A;  2Y0K A;  3AAE B;  3LK3 A;  2ZFG A;  4FRT A;  4KR4 A;  4AZL A;  2PRN A;  2MHL A;  4GF4 A;  3VZW X;  1THQ A;  4K3B A;  2KZ7 A;  3JTY A;  3LK2 B;  3AA6 B;  3VZT X;  2N2L A;  3V8U A;  1ZHX A;  4FMS A;  5AFU L;  3WI5 A;  5ADX L;  3AAE A;  2OMF A;  2QTK A;  2ERV A;  3NJT A;  3QRA A;  2F1C X;  4JFB A;  5TIS O;  3SY9 A;  3BS0 A;  4B61 A;  3T20 A;  3PGS A;  2XE1 A;  4AYN A;  2WVP A;  2O4V A;  4PR7 A;  5PRN A;  3LK2 A;  3AA6 A;  4LSE A;  1GFN A;  3G7G A;  5D5D A;  2X9K A;  3SY7 A;  1T16 A;  2ZLD A;  3AA7 B;  3SYS A;  5DL8 A;  1HXX A;  3WU2 O;  2YNK A;  3JCU O;  2J4U P;  2K0L A;  3PQS A;  4LSI A;  4FQE A;  1HXT A;  4D65 A;  4O4U A;  4O49 A;  5DL5 A;  3VZU X;  2R4L A;  3PF1 A;  1ZHT A;  2GE4 A;  3DA4 A;  4FUV A;  3K19 A;  3UAQ A;  3POU A;  4KR8 A;  1ORM A;  3WI4 A;  3NSG A;  2ODJ A;  1S5L O;  3AA7 A;  4C00 A;  4AYD C;  3DZM A;  5G3A A;  1PRN A;  3HOL A;  4RLC A;  4IL6 O;  4LSH A;  4N58 A;  4RJW A;  4UB6 O;  3HW9 A;  1QJ9 A;  2W81 C;  3HOE A;  3A0B O;  2Y2X A;  4N75 A;  1Q9F A;  4FSO A;  3SYB A;  4N74 A;  4G75 A;  1GFP A;  2WJR A;  3VY8 X;  2KXP B;  2J1N A;  1P4T A;  3A0H O;  2POR A;  1ZHW A;  2IWV A;  5KAI O;  4AFK A;  3AA0 B;  3LK4 2;  2XMX A;  3KZI O;  3QRC A;  4O4X A;  4E1S A;  4FRX A;  3BRY A;  1QJP A;  6PRN A;  4D64 A;  1GFO A;  4GCQ A;  5H2F O;  8PRN A;  5FVN A;  5EE2 A;  2IWW A;  2KXP A;  3GP6 A;  1H6S 1;  1ZHZ A;  2WJQ A;  3UU2 A;  3PQU A;  5B5E O;  1BH3 A;  2FGQ X;  1MPF A;  4AYE C;  4CTD A;  4D5U A;  5B66 O;  2R4P A;  1MM4 A;  1OPF A;  3DWO X;  1ZHY A;  2F1T A;  5GTI O;  1Q9G A;  3SZD A;  3AA1 B;  4AYI D;  4F4B A;  2R89 A;  5DL7 A;  2AXT O;  3EMN X;  2Y0H A;  5KAF O;  3VE2 A;  1IZN B;  1BT9 A;  2JMM A;  3T0S A;  4JCH A;  5T5F A;  5G39 A;  2JQY A;  5IYU A;  4N59 A;  4G76 A;  2Y0L A;  4LSF A;  4U9C A;  2M06 A;  5DL6 A;  1BXW A;  2M07 A;  2XG6 A;  3KVD D;  3PRN A;  4FT6 A;  3AA1 A;  4C4V B;  2KDY A;  4PUX A;  3RBH A;  5AFU K;  5GTH O;  2X27 X;  2XE2 A;  5ADX K;  2LHF A;  1G90 A;  2XTR A;  3T24 A;  1IZN A;  1OSM A;  2KC0 A;  1GFQ A;  4GHB A;  4O3Y A;  4KRA A;  4FOZ A;  4RLB A;  5G38 A;  2MNH A;  2XE5 A;  2Y7S A;  4AKR B;  2R88 A;  2N2M A;  4RJX A;  3BRZ A;  1GFM A;  4C4V A;  4FZM A;  4PJ0 O;  4BUM X;  3C5O A; 
#chains in the Genus database with same CATH homology
 3AA0 A;  4GCS A;  4C69 X;  3LK4 1;  4E1T A;  4AKM A;  2XTQ A;  2K4T A;  4FES A;  5JDP A;  3O0E A;  5GV0 A;  4FZN A;  4AKR A;  3POQ A;  4AUI A;  3UPG A;  2W80 C;  3VY9 X;  3AAA B;  3VE1 A;  1MM5 A;  1YS5 A;  2FGR A;  3POX A;  2XE3 A;  4XNL A;  4Z3T A;  4FSP A;  3POR A;  7PRN A;  4O3X B;  4O3Z A;  5G26 A;  3LK3 B;  1QJ8 A;  3FYX A;  1HXU A;  3A2S X;  3SZV A;  1PHO A;  3AAA A;  4O3W A;  4RL9 A;  2YPV A;  2KZ7 B;  4AYM C;  4GCP A;  4FZL A;  2LFU A;  3HWB A;  2F1V A;  3DA3 A;  4XNK A;  4QQ1 A;  3TZG A;  1E54 A;  2Y0K A;  3AAE B;  3LK3 A;  2ZFG A;  4FRT A;  4KR4 A;  4AZL A;  2PRN A;  2MHL A;  4GF4 A;  3VZW X;  1THQ A;  2KZ7 A;  3JTY A;  3LK2 B;  3AA6 B;  3VZT X;  2N2L A;  3V8U A;  1ZHX A;  4FMS A;  5AFU L;  3WI5 A;  5ADX L;  3AAE A;  2OMF A;  2QTK A;  2ERV A;  4JFB A;  3QRA A;  3T20 A;  3SY9 A;  4B61 A;  2XE1 A;  4AYN A;  5PRN A;  2O4V A;  3LK2 A;  3AA6 A;  4LSE A;  1GFN A;  3G7G A;  5D5D A;  3SY7 A;  2ZLD A;  3AA7 B;  3SYS A;  5DL8 A;  1HXX A;  2J4U P;  2YNK A;  2K0L A;  3PQS A;  4LSI A;  1HXT A;  4O4U A;  4O49 A;  5DL5 A;  3VZU X;  1ZHT A;  2GE4 A;  3DA4 A;  4FUV A;  3K19 A;  3UAQ A;  3POU A;  4KR8 A;  1ORM A;  3WI4 A;  3NSG A;  2ODJ A;  3AA7 A;  4AYD C;  1PRN A;  3HOL A;  4RLC A;  4LSH A;  4N58 A;  4RJW A;  3HW9 A;  1QJ9 A;  2W81 C;  3HOE A;  3SYB A;  2Y2X A;  4D5U A;  1Q9F A;  4FSO A;  4D65 A;  4G75 A;  1GFP A;  3VY8 X;  2KXP B;  2J1N A;  1P4T A;  2POR A;  1ZHW A;  4AFK A;  3AA0 B;  3LK4 2;  2XMX A;  3QRC A;  4O4X A;  4E1S A;  4FRX A;  1QJP A;  6PRN A;  4D64 A;  1GFO A;  4GCQ A;  8PRN A;  5FVN A;  5EE2 A;  2KXP A;  3GP6 A;  1H6S 1;  1ZHZ A;  3UU2 A;  3PQU A;  1BH3 A;  2FGQ X;  1MPF A;  4AYE C;  1MM4 A;  1OPF A;  3SZD A;  1ZHY A;  2F1T A;  4AYI D;  1Q9G A;  4F4B A;  3AA1 B;  5DL7 A;  3EMN X;  2Y0H A;  3VE2 A;  1IZN B;  1BT9 A;  2JMM A;  3T0S A;  4JCH A;  5T5F A;  5IYU A;  4N59 A;  4G76 A;  2Y0L A;  4LSF A;  4U9C A;  2M06 A;  5DL6 A;  1BXW A;  2M07 A;  2XG6 A;  3KVD D;  3PRN A;  4FT6 A;  3AA1 A;  2KDY A;  4PUX A;  3RBH A;  5AFU K;  2X27 X;  2XE2 A;  5ADX K;  2LHF A;  1G90 A;  2XTR A;  3T24 A;  1IZN A;  1OSM A;  2KC0 A;  1GFQ A;  4GHB A;  4O3Y A;  4KRA A;  4FOZ A;  4RLB A;  2MNH A;  2XE5 A;  2Y7S A;  4AKR B;  2N2M A;  4RJX A;  1GFM A;  4FZM A;  4BUM X;  3C5O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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