5JDWA

Crystal structure of human l-arginine:glycine amidinotransferase in complex with glycine
Total Genus 119
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
360
structure length
360
Chain Sequence
CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE)
publication title The ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study.
pubmed doi rcsb
source organism Homo sapiens
total genus 119
structure length 360
sequence length 360
ec nomenclature ec 2.1.4.1: Glycine amidinotransferase.
pdb deposition date 1998-10-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 5jdwA00
3I2EA 4N2BA 3H7CX 4YTBA 4N2DA 1JDXA 5AN9I 2CI7A 4N25A 3APMA 3B1TA 2CMUA 1ZBRA 2CI4A 2CI6A 2JDXA 4YTGA 4N2MA 4N2HA 2CI5A 4X8GA 6JDWA 2DW5A 5AK7A 3APNA 1JDWA 2CI3A 3P8EA 2JERA 4X8CA 8JDWA 3RHYA 4DKTA 1XKNA 1WDAA 2JAIA 1WD9A 4N2IA 1BWDA 4N2AA 4BOFA 4N2KA 5JDWA 4E4JA 4N2GA 2JDWA 3I4AA 3JDWA 3BPBA 2ACIA 7JDWA 2AAFA 4N28A 4N26A 2Q3UA 2A9GA 3B1UA 4N2LA 4N2EA 4JDWA 1G62A 2EWOA 4N22A 5M3QA 9JDWA 2DEXX 2DEYX 2ABRA 1LXYA 3HVMA 2CI1A 1G61A 2C6ZA 4N24A 4N2FA 4N2CA 1RXXA 3H7KA 4YT9A 3P8PA 1H70A 1VKPA 5AK8A 2JAJA 1S9RA 1WD8A 5HP5A 4N20A 4N2NA 2DEWX
chains in the Genus database with same CATH superfamily
3I2EA 4N2BA 3H7CX 4YTBA 4N2DA 1JDXA 5AN9I 2CI7A 4N25A 3APMA 3B1TA 2CMUA 1ZBRA 2CI4A 2CI6A 2JDXA 4YTGA 4N2MA 4N2HA 2CI5A 4X8GA 6JDWA 2DW5A 5AK7A 3APNA 1JDWA 2CI3A 3P8EA 2JERA 4X8CA 8JDWA 3RHYA 4DKTA 1XKNA 1WDAA 2JAIA 1WD9A 4N2IA 1BWDA 4N2AA 4N2KA 4BOFA 5JDWA 4E4JA 4N2GA 2JDWA 3I4AA 3JDWA 3BPBA 2ACIA 7JDWA 2AAFA 4N28A 4N26A 2A9GA 3B1UA 2Q3UA 4N2LA 4N2EA 4JDWA 1G62A 2EWOA 4N22A 5M3QA 9JDWA 1YNIA 2DEXX 2DEYX 2ABRA 1LXYA 1YNFA 3HVMA 2CI1A 1G61A 2C6ZA 4N24A 4N2FA 4N2CA 1RXXA 3H7KA 1YNHA 4YT9A 3P8PA 1H70A 1VKPA 5AK8A 2JAJA 1S9RA 1WD8A 5HP5A 4N20A 4N2NA 2DEWX
chains in the Genus database with same CATH topology
3I2EA 4N2BA 3H7CX 4YTBA 4N2DA 1JDXA 5AN9I 2CI7A 4N25A 3APMA 3B1TA 2CMUA 1ZBRA 2CI4A 2CI6A 2JDXA 4YTGA 4N2MA 4N2HA 2CI5A 4X8GA 6JDWA 2DW5A 5AK7A 3APNA 1JDWA 2CI3A 3P8EA 2JERA 4X8CA 8JDWA 3RHYA 4DKTA 1XKNA 1WDAA 2JAIA 1WD9A 4N2IA 1BWDA 4N2AA 4BOFA 4N2KA 5JDWA 4E4JA 4N2GA 2JDWA 3I4AA 3JDWA 3BPBA 2ACIA 7JDWA 2AAFA 4N28A 4N26A 2Q3UA 2A9GA 3B1UA 4N2LA 4N2EA 4JDWA 1G62A 2EWOA 4N22A 5M3QA 9JDWA 2DEXX 2DEYX 2ABRA 1LXYA 3HVMA 2CI1A 1G61A 2C6ZA 4N24A 4N2FA 4N2CA 1RXXA 3H7KA 4YT9A 3P8PA 1H70A 1VKPA 5AK8A 2JAJA 1S9RA 1WD8A 5HP5A 4N20A 4N2NA 2DEWX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I2E A;  4N2B A;  3H7C X;  4YTB A;  4N2D A;  1JDX A;  5AN9 I;  2CI7 A;  4N25 A;  3APM A;  3B1T A;  2CMU A;  1ZBR A;  2CI4 A;  2CI6 A;  2JDX A;  4YTG A;  4N2M A;  4N2H A;  2CI5 A;  4X8G A;  6JDW A;  2DW5 A;  5AK7 A;  3APN A;  1JDW A;  2CI3 A;  3P8E A;  2JER A;  4X8C A;  8JDW A;  3RHY A;  4DKT A;  1XKN A;  1WDA A;  2JAI A;  1WD9 A;  4N2I A;  1BWD A;  4N2A A;  4BOF A;  4N2K A;  5JDW A;  4E4J A;  4N2G A;  2JDW A;  3I4A A;  3JDW A;  3BPB A;  2ACI A;  7JDW A;  2AAF A;  4N28 A;  4N26 A;  2Q3U A;  2A9G A;  3B1U A;  4N2L A;  4N2E A;  4JDW A;  1G62 A;  2EWO A;  4N22 A;  5M3Q A;  9JDW A;  2DEX X;  2DEY X;  2ABR A;  1LXY A;  3HVM A;  2CI1 A;  1G61 A;  2C6Z A;  4N24 A;  4N2F A;  4N2C A;  1RXX A;  3H7K A;  4YT9 A;  3P8P A;  1H70 A;  1VKP A;  5AK8 A;  2JAJ A;  1S9R A;  1WD8 A;  5HP5 A;  4N20 A;  4N2N A;  2DEW X; 
#chains in the Genus database with same CATH topology
 3I2E A;  4N2B A;  3H7C X;  4YTB A;  4N2D A;  1JDX A;  5AN9 I;  2CI7 A;  4N25 A;  3APM A;  3B1T A;  2CMU A;  1ZBR A;  2CI4 A;  2CI6 A;  2JDX A;  4YTG A;  4N2M A;  4N2H A;  2CI5 A;  4X8G A;  6JDW A;  2DW5 A;  5AK7 A;  3APN A;  1JDW A;  2CI3 A;  3P8E A;  2JER A;  4X8C A;  8JDW A;  3RHY A;  4DKT A;  1XKN A;  1WDA A;  2JAI A;  1WD9 A;  4N2I A;  1BWD A;  4N2A A;  4N2K A;  4BOF A;  5JDW A;  4E4J A;  4N2G A;  2JDW A;  3I4A A;  3JDW A;  3BPB A;  2ACI A;  7JDW A;  2AAF A;  4N28 A;  4N26 A;  2A9G A;  3B1U A;  2Q3U A;  4N2L A;  4N2E A;  4JDW A;  1G62 A;  2EWO A;  4N22 A;  5M3Q A;  9JDW A;  1YNI A;  2DEX X;  2DEY X;  2ABR A;  1LXY A;  1YNF A;  3HVM A;  2CI1 A;  1G61 A;  2C6Z A;  4N24 A;  4N2F A;  4N2C A;  1RXX A;  3H7K A;  1YNH A;  4YT9 A;  3P8P A;  1H70 A;  1VKP A;  5AK8 A;  2JAJ A;  1S9R A;  1WD8 A;  5HP5 A;  4N20 A;  4N2N A;  2DEW X; 
#chains in the Genus database with same CATH homology
 3I2E A;  4N2B A;  3H7C X;  4YTB A;  4N2D A;  1JDX A;  5AN9 I;  2CI7 A;  4N25 A;  3APM A;  3B1T A;  2CMU A;  1ZBR A;  2CI4 A;  2CI6 A;  2JDX A;  4YTG A;  4N2M A;  4N2H A;  2CI5 A;  4X8G A;  6JDW A;  2DW5 A;  5AK7 A;  3APN A;  1JDW A;  2CI3 A;  3P8E A;  2JER A;  4X8C A;  8JDW A;  3RHY A;  4DKT A;  1XKN A;  1WDA A;  2JAI A;  1WD9 A;  4N2I A;  1BWD A;  4N2A A;  4BOF A;  4N2K A;  5JDW A;  4E4J A;  4N2G A;  2JDW A;  3I4A A;  3JDW A;  3BPB A;  2ACI A;  7JDW A;  2AAF A;  4N28 A;  4N26 A;  2Q3U A;  2A9G A;  3B1U A;  4N2L A;  4N2E A;  4JDW A;  1G62 A;  2EWO A;  4N22 A;  5M3Q A;  9JDW A;  2DEX X;  2DEY X;  2ABR A;  1LXY A;  3HVM A;  2CI1 A;  1G61 A;  2C6Z A;  4N24 A;  4N2F A;  4N2C A;  1RXX A;  3H7K A;  4YT9 A;  3P8P A;  1H70 A;  1VKP A;  5AK8 A;  2JAJ A;  1S9R A;  1WD8 A;  5HP5 A;  4N20 A;  4N2N A;  2DEW X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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