5JFZA

E. coli ecfict in complex with ecfica mutant e28g
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
186
structure length
181
Chain Sequence
DPYLYPGLDIMRNRLNIHQQQRLEQAAYEMTALRAATIELGPLVRGLPHLRTIHRQLYQDIFDWAGQLREVDIPFCHFAYIEKEGNALMQDLEEEGYLVGLEKAKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQLSWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Escherichia coli Fic Toxin-Like Protein in Complex with Its Cognate Antitoxin.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase
molecule keywords Probable adenosine monophosphate-protein transferase fic
total genus 65
structure length 181
sequence length 186
chains with identical sequence C, E
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2016-04-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 5jfzA00
5CGLA 4ITRA 3ZCBA 3ZLMA 5JJ6A 4U0ZA 4XI8A 5CMTA 5JJ7A 3SN9A 2VY3A 5JFFA 4U0UA 3S6AA 4M16A 2F6SA 4U0SA 2JK8A 3CUCA 4N67A 2VZAA 4X2DA 4U07A 4NPSA 2G03A 4LU4A 5CKLA 4X2CA 3ZC7A 3N3UA 4X2EA 4U04A 4PY3A 3LETA 4WGJA 5EU0A 3SE5A 3SHGA 5JFZA
chains in the Genus database with same CATH superfamily
5CGLA 4ITRA 3ZCBA 3ZLMA 5JJ6A 4U0ZA 4XI8A 5CMTA 5JJ7A 3SN9A 2VY3A 2NUNA 5JFFA 4U0UA 3S6AA 1NH1A 4M16A 2F6SA 4U0SA 2JK8A 3CUCA 4N67A 2VZAA 2NUDA 4X2DA 4U07A 4NPSA 2G03A 4LU4A 5CKLA 4X2CA 3ZC7A 3N3UA 4X2EA 4U04A 4PY3A 3LETA 4WGJA 5EU0A 3SE5A 3SHGA 5JFZA
chains in the Genus database with same CATH topology
5CGLA 4ITRA 3ZCBA 3ZLMA 5JJ6A 4U0ZA 4XI8A 5CMTA 5JJ7A 3SN9A 2VY3A 5JFFA 4U0UA 3S6AA 4M16A 2F6SA 4U0SA 2JK8A 3CUCA 4N67A 2VZAA 4X2DA 4U07A 4NPSA 2G03A 4LU4A 5CKLA 4X2CA 3ZC7A 3N3UA 4X2EA 4U04A 4PY3A 3LETA 4WGJA 5EU0A 3SE5A 3SHGA 5JFZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CGL A;  4ITR A;  3ZCB A;  3ZLM A;  5JJ6 A;  4U0Z A;  4XI8 A;  5CMT A;  5JJ7 A;  3SN9 A;  2VY3 A;  5JFF A;  4U0U A;  3S6A A;  4M16 A;  2F6S A;  4U0S A;  2JK8 A;  3CUC A;  4N67 A;  2VZA A;  4X2D A;  4U07 A;  4NPS A;  2G03 A;  4LU4 A;  5CKL A;  4X2C A;  3ZC7 A;  3N3U A;  4X2E A;  4U04 A;  4PY3 A;  3LET A;  4WGJ A;  5EU0 A;  3SE5 A;  3SHG A;  5JFZ A; 
#chains in the Genus database with same CATH topology
 5CGL A;  4ITR A;  3ZCB A;  3ZLM A;  5JJ6 A;  4U0Z A;  4XI8 A;  5CMT A;  5JJ7 A;  3SN9 A;  2VY3 A;  2NUN A;  5JFF A;  4U0U A;  3S6A A;  1NH1 A;  4M16 A;  2F6S A;  4U0S A;  2JK8 A;  3CUC A;  4N67 A;  2VZA A;  2NUD A;  4X2D A;  4U07 A;  4NPS A;  2G03 A;  4LU4 A;  5CKL A;  4X2C A;  3ZC7 A;  3N3U A;  4X2E A;  4U04 A;  4PY3 A;  3LET A;  4WGJ A;  5EU0 A;  3SE5 A;  3SHG A;  5JFZ A; 
#chains in the Genus database with same CATH homology
 5CGL A;  4ITR A;  3ZCB A;  3ZLM A;  5JJ6 A;  4U0Z A;  4XI8 A;  5CMT A;  5JJ7 A;  3SN9 A;  2VY3 A;  5JFF A;  4U0U A;  3S6A A;  4M16 A;  2F6S A;  4U0S A;  2JK8 A;  3CUC A;  4N67 A;  2VZA A;  4X2D A;  4U07 A;  4NPS A;  2G03 A;  4LU4 A;  5CKL A;  4X2C A;  3ZC7 A;  3N3U A;  4X2E A;  4U04 A;  4PY3 A;  3LET A;  4WGJ A;  5EU0 A;  3SE5 A;  3SHG A;  5JFZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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