The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
123
|
sequence length |
507
|
structure length |
507
|
Chain Sequence |
KTFRNPIITGMNPDPSICRVGDDFYLVTSTFEYFPGLPVYHSKDLVHWKLIGHALSRPENNPLMGCNASTGGQYAPTLRYHDGTFYVIGTNYGGKGSQGVFYVTAKNPAGPWSDPVWVGNWYVDPSIEFIDGKMYFLSPDNQGSFLLGVMDPETGTFVEALRKVASGLGGSSPEGPHFYKIGDYYYIMSAEGGTGYEHREVIQRSKSPWGPYEPSPVNPVLSNMNCPDHPFQAIGHADLVQLKDGSWWAVCLGIRPVNGKYQHLGRETFLAPVTWDADGWPKVGKDGVVQETYLFPNLPSHVWMEQPVRDDFDQETLGLDWTFIRNPAHSFWSLTEKPGSLRLKGTAINFTTNDSPSFIGRRQAAFNLTASAKVNFIPKVENEEAGLVVRADDKNHYDLLITERNGQRVAMIRKTLKDKVVDTTCKELPATGEVILSITATETTYTFEIKAAHVSAILGTASTRDVSNEVVGGFTGVFIGMYASGNGQANTNPADFDWFDFRCLDLE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
pubmed doi rcsb |
molecule keywords |
Non-reducing end alpha-L-arabinofuranosidase BoGH43B
|
molecule tags |
Hydrolase
|
source organism |
Bacteroides ovatus
|
total genus |
123
|
structure length |
507
|
sequence length |
507
|
chains with identical sequence |
B
|
ec nomenclature |
ec
3.2.1.55: Non-reducing end alpha-L-arabinofuranosidase. |
pdb deposition date | 2016-05-03 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF04616 | Glyco_hydro_43 | Glycosyl hydrolases family 43 |
A | PF17851 | GH43_C2 | Beta xylosidase C-terminal Concanavalin A-like domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | ||
Mainly Beta | 5 Propeller | Tachylectin-2; Chain A | Glycosyl hydrolase domain; family 43 |