5JQNA

Nitn amidase from neterenkonia sp. an1 after thrombin his-tag removal.
Total Genus 74
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
264
structure length
254
Chain Sequence
HMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFVPGEQPPPVLSWGGRQLSLLVYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLPDADYLQDRRAELHRNWL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Aliphatic amidase
publication title QM/MM Modelling of Substrate Binding in the Amidase Active Site
rcsb
source organism Nesterenkonia sp. an1
total genus 74
structure length 254
sequence length 264
ec nomenclature ec 3.5.1.4: Amidase.
pdb deposition date 2016-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 5jqnA00
3SDBA 4H5UA 5H8JA 4IZTA 3SZGA 1FO6A 3IW3A 1J31A 4IZWA 5KHAA 1UF5A 2DYVA 1F89A 4IZUA 4F4HA 3DLAA 5JQNA 4GYLA 2VHHA 3KI8A 2E2KA 3SEQA 4IZSA 3IVZA 2DYUA 4GYNA 2VHIA 4HG3A 2GGLA 4LF0A 4CYFA 2E2LA 2E11A 3SEZA 4CYGA 2PLQA 2GGKA 1ERZA 2W1VA 4CYYA 1UF8A 3P8KA 4KZFA 1EMSA 4HG5A 3N05A 3WUYA 5H8KA 3SYTA 3KLCA 1UF4A 3ILVA 2UXYA 4IZVA 4HGDA 1UF7A 5H8IA 3HKXA 5H8LA
chains in the Genus database with same CATH superfamily
3SDBA 4H5UA 5H8JA 4IZTA 3SZGA 1FO6A 3IW3A 1J31A 4IZWA 5KHAA 1UF5A 2DYVA 1F89A 4IZUA 4F4HA 3DLAA 5JQNA 4GYLA 2VHHA 3KI8A 2E2KA 3SEQA 4IZSA 3IVZA 2DYUA 4GYNA 2VHIA 4HG3A 2GGLA 4LF0A 4CYFA 2E2LA 2E11A 3SEZA 4CYGA 2PLQA 2GGKA 1ERZA 2W1VA 4CYYA 1UF8A 3P8KA 4KZFA 1EMSA 4HG5A 3N05A 3WUYA 5H8KA 3SYTA 3KLCA 1UF4A 3ILVA 2UXYA 4IZVA 4HGDA 1UF7A 5H8IA 3HKXA 5H8LA
chains in the Genus database with same CATH topology
3SDBA 4H5UA 5H8JA 4IZTA 3SZGA 1FO6A 3IW3A 1J31A 4IZWA 5KHAA 1UF5A 2DYVA 1F89A 4IZUA 4F4HA 3DLAA 5JQNA 4GYLA 2VHHA 3KI8A 2E2KA 3SEQA 4IZSA 3IVZA 2DYUA 4GYNA 2VHIA 4HG3A 2GGLA 4LF0A 4CYFA 2E2LA 2E11A 3SEZA 4CYGA 2PLQA 2GGKA 1ERZA 2W1VA 4CYYA 1UF8A 3P8KA 4KZFA 1EMSA 4HG5A 3N05A 3WUYA 5H8KA 3SYTA 3KLCA 1UF4A 3ILVA 2UXYA 4IZVA 4HGDA 1UF7A 5H8IA 3HKXA 5H8LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SDB A;  4H5U A;  5H8J A;  4IZT A;  3SZG A;  1FO6 A;  3IW3 A;  1J31 A;  4IZW A;  5KHA A;  1UF5 A;  2DYV A;  1F89 A;  4IZU A;  4F4H A;  3DLA A;  5JQN A;  4GYL A;  2VHH A;  3KI8 A;  2E2K A;  3SEQ A;  4IZS A;  3IVZ A;  2DYU A;  4GYN A;  2VHI A;  4HG3 A;  2GGL A;  4LF0 A;  4CYF A;  2E2L A;  2E11 A;  3SEZ A;  4CYG A;  2PLQ A;  2GGK A;  1ERZ A;  2W1V A;  4CYY A;  1UF8 A;  3P8K A;  4KZF A;  1EMS A;  4HG5 A;  3N05 A;  3WUY A;  5H8K A;  3SYT A;  3KLC A;  1UF4 A;  3ILV A;  2UXY A;  4IZV A;  4HGD A;  1UF7 A;  5H8I A;  3HKX A;  5H8L A; 
#chains in the Genus database with same CATH topology
 3SDB A;  4H5U A;  5H8J A;  4IZT A;  3SZG A;  1FO6 A;  3IW3 A;  1J31 A;  4IZW A;  5KHA A;  1UF5 A;  2DYV A;  1F89 A;  4IZU A;  4F4H A;  3DLA A;  5JQN A;  4GYL A;  2VHH A;  3KI8 A;  2E2K A;  3SEQ A;  4IZS A;  3IVZ A;  2DYU A;  4GYN A;  2VHI A;  4HG3 A;  2GGL A;  4LF0 A;  4CYF A;  2E2L A;  2E11 A;  3SEZ A;  4CYG A;  2PLQ A;  2GGK A;  1ERZ A;  2W1V A;  4CYY A;  1UF8 A;  3P8K A;  4KZF A;  1EMS A;  4HG5 A;  3N05 A;  3WUY A;  5H8K A;  3SYT A;  3KLC A;  1UF4 A;  3ILV A;  2UXY A;  4IZV A;  4HGD A;  1UF7 A;  5H8I A;  3HKX A;  5H8L A; 
#chains in the Genus database with same CATH homology
 3SDB A;  4H5U A;  5H8J A;  4IZT A;  3SZG A;  1FO6 A;  3IW3 A;  1J31 A;  4IZW A;  5KHA A;  1UF5 A;  2DYV A;  1F89 A;  4IZU A;  4F4H A;  3DLA A;  5JQN A;  4GYL A;  2VHH A;  3KI8 A;  2E2K A;  3SEQ A;  4IZS A;  3IVZ A;  2DYU A;  4GYN A;  2VHI A;  4HG3 A;  2GGL A;  4LF0 A;  4CYF A;  2E2L A;  2E11 A;  3SEZ A;  4CYG A;  2PLQ A;  2GGK A;  1ERZ A;  2W1V A;  4CYY A;  1UF8 A;  3P8K A;  4KZF A;  1EMS A;  4HG5 A;  3N05 A;  3WUY A;  5H8K A;  3SYT A;  3KLC A;  1UF4 A;  3ILV A;  2UXY A;  4IZV A;  4HGD A;  1UF7 A;  5H8I A;  3HKX A;  5H8L A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...