5K08A

Reca mini intein-zeise's salt complex
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
142
structure length
142
Chain Sequence
CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAILWATPDHKVLTEYGWRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTFDLEVEELHTLVAEGVVVHACSP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords RecA mini intein
publication title Structural insights into protein splicing inhibition by platinum therapeutics as potential anti-microbials
rcsb
source organism Mycobacterium tuberculosis
total genus 33
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2016-05-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 5k08A00
1AM2A 4O1RA 1GPPA 3IFJA 1LWSA 4OZ6A 1AT0A 1ZDEA 3IGDA 2JMZA 4KL6A 2IN8A 4O1SA 1DQ3A 4E2UA 4GIGA 2IN0A 3NZMA 1MI8A 5K08A 2CW7A 2IN9A 2LQMA 5I0AA 1VDEA 2CW8A 2L8LA 4E2TA 1LWTA 1ZD7A 2KEQA 1JVAA 1UM2A 2LWYA 2JNQA 2IMZA 4KL5A 1DFAA 1EF0A 2LCJA
chains in the Genus database with same CATH superfamily
1AM2A 4O1RA 1GPPA 3IFJA 1LWSA 4OZ6A 1AT0A 1ZDEA 3IGDA 2JMZA 4KL6A 2IN8A 4QFQA 4O1SA 1DQ3A 4E2UA 4GIGA 2IN0A 3NZMA 1MI8A 5K08A 2CW7A 2IN9A 2LQMA 5I0AA 1VDEA 2CW8A 2L8LA 4LX3A 4E2TA 1LWTA 1ZD7A 2KEQA 1JVAA 1UM2A 2LWYA 2JNQA 2IMZA 4KL5A 1DFAA 1EF0A 2LCJA
chains in the Genus database with same CATH topology
1AM2A 4O1RA 1GPPA 3IFJA 1LWSA 4OZ6A 1AT0A 1ZDEA 3IGDA 2JMZA 4KL6A 2IN8A 4O1SA 1DQ3A 4E2UA 4GIGA 2IN0A 3NZMA 1MI8A 5K08A 2CW7A 2IN9A 2LQMA 5I0AA 1VDEA 2CW8A 2L8LA 4E2TA 1LWTA 1ZD7A 2KEQA 1JVAA 1UM2A 2LWYA 2JNQA 2IMZA 4KL5A 1DFAA 1EF0A 2LCJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AM2 A;  4O1R A;  1GPP A;  3IFJ A;  1LWS A;  4OZ6 A;  1AT0 A;  1ZDE A;  3IGD A;  2JMZ A;  4KL6 A;  2IN8 A;  4O1S A;  1DQ3 A;  4E2U A;  4GIG A;  2IN0 A;  3NZM A;  1MI8 A;  5K08 A;  2CW7 A;  2IN9 A;  2LQM A;  5I0A A;  1VDE A;  2CW8 A;  2L8L A;  4E2T A;  1LWT A;  1ZD7 A;  2KEQ A;  1JVA A;  1UM2 A;  2LWY A;  2JNQ A;  2IMZ A;  4KL5 A;  1DFA A;  1EF0 A;  2LCJ A; 
#chains in the Genus database with same CATH topology
 1AM2 A;  4O1R A;  1GPP A;  3IFJ A;  1LWS A;  4OZ6 A;  1AT0 A;  1ZDE A;  3IGD A;  2JMZ A;  4KL6 A;  2IN8 A;  4QFQ A;  4O1S A;  1DQ3 A;  4E2U A;  4GIG A;  2IN0 A;  3NZM A;  1MI8 A;  5K08 A;  2CW7 A;  2IN9 A;  2LQM A;  5I0A A;  1VDE A;  2CW8 A;  2L8L A;  4LX3 A;  4E2T A;  1LWT A;  1ZD7 A;  2KEQ A;  1JVA A;  1UM2 A;  2LWY A;  2JNQ A;  2IMZ A;  4KL5 A;  1DFA A;  1EF0 A;  2LCJ A; 
#chains in the Genus database with same CATH homology
 1AM2 A;  4O1R A;  1GPP A;  3IFJ A;  1LWS A;  4OZ6 A;  1AT0 A;  1ZDE A;  3IGD A;  2JMZ A;  4KL6 A;  2IN8 A;  4O1S A;  1DQ3 A;  4E2U A;  4GIG A;  2IN0 A;  3NZM A;  1MI8 A;  5K08 A;  2CW7 A;  2IN9 A;  2LQM A;  5I0A A;  1VDE A;  2CW8 A;  2L8L A;  4E2T A;  1LWT A;  1ZD7 A;  2KEQ A;  1JVA A;  1UM2 A;  2LWY A;  2JNQ A;  2IMZ A;  4KL5 A;  1DFA A;  1EF0 A;  2LCJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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