The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
177
|
sequence length |
507
|
structure length |
496
|
Chain Sequence |
SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKRQFADVLASPLAGGTDLPAPQPVFPRY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Brucella melitensis Methionyl-tRNA-Synthetase (MetRS), a Potential Drug Target for Brucellosis.
pubmed doi rcsb |
molecule tags |
Ligase
|
source organism |
Brucella suis biovar 1 (strain 1330)
|
molecule keywords |
Methionine--tRNA ligase
|
total genus |
177
|
structure length |
496
|
sequence length |
507
|
chains with identical sequence |
B, C
|
ec nomenclature |
ec
6.1.1.10: Methionine--tRNA ligase. |
pdb deposition date | 2016-05-17 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF08264 | Anticodon_1 | Anticodon-binding domain of tRNA |
A | PF09334 | tRNA-synt_1g | tRNA synthetases class I (M) |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Isoleucyl-tRNA Synthetase; Domain 1 | Isoleucyl-tRNA Synthetase; Domain 1 | ||
Mainly Beta | Beta Complex | Methionyl-trna Synthetase; domain 2 | Methionyl-trna Synthetase; domain 2 | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs |